diff --git a/src/anchor_vs_one_partner/mcot_anchor.cpp b/src/anchor_vs_one_partner/mcot_anchor.cpp index 9ad4846..6d11fe4 100644 --- a/src/anchor_vs_one_partner/mcot_anchor.cpp +++ b/src/anchor_vs_one_partner/mcot_anchor.cpp @@ -757,7 +757,7 @@ int main(int argc, char *argv[]) // int height_permut = 10, size_min_permut = 200, size_max_permut = 300; //50000 150000 25 double pvalue = 0.0005, pvalue_mult = 1.5, dpvalue = 0.0000000005; // 0.0005 1.5 int mot_anchor = 0;// 0 = pwm from file >0 pwm from pre-computed database - int s_overlap_min = 6, s_ncycle_small = 1000, s_ncycle_large = 10000, reinit_permut = 25;//for similarity min_size_of_alignment, no. of permutation (test & detailed) + int s_overlap_min = 6, s_ncycle_small = 1000, s_ncycle_large = 10000, reinit_permut = 40;//for similarity min_size_of_alignment, no. of permutation (test & detailed) double s_granul = 0.001;//for similarity okruglenie 4astotnyh matric int shift_min = atoi(argv[4]); // minimal spacer length int shift_max = atoi(argv[5]); // upper bound of spacer length