From a8adb9816f47de0e32861da4b811849fc895070e Mon Sep 17 00:00:00 2001
From: Victor Levitsky <68056117+parthian-sterlet@users.noreply.github.com>
Date: Thu, 8 Sep 2022 16:41:50 +0700
Subject: [PATCH] Update mcot.cpp

---
 src/anchor_vs_many_partners/mcot.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/anchor_vs_many_partners/mcot.cpp b/src/anchor_vs_many_partners/mcot.cpp
index 24dde33..6a7f95f 100644
--- a/src/anchor_vs_many_partners/mcot.cpp
+++ b/src/anchor_vs_many_partners/mcot.cpp
@@ -857,7 +857,7 @@ int main(int argc, char *argv[])
 	int height_permut = 100, size_min_permut = 200000, size_max_permut = 300000; //50000 150000 25  parametry permutacii
 	double pvalue = 0.0005, pvalue_mult = 1.5, dpvalue = 0.0000005; // 0.0005 1.5 parametry dlya porogov matric
 	int mot_anchor = 0;// 0 = pwm from file >0 pwm from pre-computed database	
-	int s_overlap_min = 6, s_ncycle_small = 1000, s_ncycle_large = 10000, reinit_permut = 25;//for permutation(motif_comparison) min_length_of_alignment, no. of permutation (test & detailed)
+	int s_overlap_min = 6, s_ncycle_small = 1000, s_ncycle_large = 10000, reinit_permut = 40;//for permutation(motif_comparison) min_length_of_alignment, no. of permutation (test & detailed)
 	double s_granul = 0.001;//for permutation(motif_comparison) okruglenie 4astotnyh matric	
 	strcpy(file_pfm_anchor, argv[2]);
 	strcpy(partner_db, argv[3]); //hs_core, hs_full, mm_core, mm_full, dapseq