From 7c22c14678f1612eec93311980265826b2bfb41a Mon Sep 17 00:00:00 2001
From: Galen Lynch <galen@galenlynch.com>
Date: Tue, 11 Nov 2025 16:41:56 -0800
Subject: [PATCH 1/2] packaging: restrict python minimum version

Package currently has no solution to dependencies, as judged by `uv`.

Closes #91
---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 46bc13f..9217b51 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -6,7 +6,7 @@ build-backend = "setuptools.build_meta"
 name = "aind-dynamic-foraging-basic-analysis"
 description = "Generated from aind-library-template"
 license = {text = "MIT"}
-requires-python = ">=3.7"
+requires-python = ">=3.9"
 authors = [
     {name = "Allen Institute for Neural Dynamics"}
 ]

From 4a3f04d755a751853fc9cc90da96d0a6b649803b Mon Sep 17 00:00:00 2001
From: Galen Lynch <galen@galenlynch.com>
Date: Tue, 11 Nov 2025 16:50:44 -0800
Subject: [PATCH 2/2] CI: change python CI version to 3.9

Minimum version for dependencies is 3.9? Not sure how this was working.

Also delete init.yml which was only used to initialize the package.
---
 .github/workflows/init.yml            | 52 ---------------------------
 .github/workflows/tag_and_publish.yml |  8 ++---
 .github/workflows/test_and_lint.yml   |  4 +--
 3 files changed, 6 insertions(+), 58 deletions(-)
 delete mode 100644 .github/workflows/init.yml

diff --git a/.github/workflows/init.yml b/.github/workflows/init.yml
deleted file mode 100644
index 0336013..0000000
--- a/.github/workflows/init.yml
+++ /dev/null
@@ -1,52 +0,0 @@
-# Workflow runs only once when the template is first used.
-# File can be safely deleted after repo is initialized.
-name: Initialize repository
-on:
-  push:
-    branches:
-      - main
-
-jobs:
-  initialize-package:
-    name: Initialize the package
-    if: ${{github.event.repository.name != 'aind-library-template'}}
-    runs-on: ubuntu-latest
-    env:
-      REPO_NAME: ${{ github.event.repository.name }}
-      GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
-    steps:
-    - name: Checkout
-      uses: actions/checkout@v3
-    - name: Rename package
-      run: |
-        pkg_name=$(echo "${REPO_NAME}" | tr - _)
-        current_description='description = "Prints messages to stdout. Simple boilerplate for libraries."'
-        new_description='description = "Generated from aind-library-template"'
-        readme_description='Template for a minimal, basic repository for an AIND library.'
-        new_readme_description='Generated from aind-library-template'
-        echo "Package Name ${pkg_name}"
-        mkdir src/${pkg_name}
-        touch src/${pkg_name}/__init__.py
-        echo '"""Init package"""' >> src/${pkg_name}/__init__.py
-        echo '__version__ = "0.0.0"' >> src/${pkg_name}/__init__.py
-        sed -i "s/aind_library_template/${pkg_name}/" pyproject.toml
-        sed -i "s/aind-library-template/${REPO_NAME}/" pyproject.toml
-        sed -i "s/aind_library_template/${pkg_name}/" doc_template/source/conf.py
-        sed -i "s/${current_description}/${new_description}/" pyproject.toml
-        sed -i "/pandas/d" pyproject.toml
-        sed -i "s/aind-library-template/${REPO_NAME}/" README.md
-        sed -i "s/${readme_description}/${new_readme_description}/" README.md
-    - name: Commit changes
-      uses: EndBug/add-and-commit@v9
-      with:
-        default_author: github_actions
-        message: "ci: version bump [skip actions]"
-        add: '["pyproject.toml", "README.md", "src/*", "doc_template/source/conf.py"]'
-        remove: '["-r src/aind_library_template", "tests/test_message_handler.py"]'
-    - name: Add first tag
-      run: |
-        git tag v0.0.0
-        git push origin v0.0.0
-    - name: Disable workflow
-      run: |
-        gh workflow disable -R $GITHUB_REPOSITORY "${{ github.workflow }}"
diff --git a/.github/workflows/tag_and_publish.yml b/.github/workflows/tag_and_publish.yml
index 3d055f0..96878be 100644
--- a/.github/workflows/tag_and_publish.yml
+++ b/.github/workflows/tag_and_publish.yml
@@ -16,10 +16,10 @@ jobs:
         ref: ${{ env.DEFAULT_BRANCH }}
         fetch-depth: 0
         token: ${{ secrets.SERVICE_TOKEN }}
-    - name: Set up Python 3.8
+    - name: Set up Python 3.9
       uses: actions/setup-python@v3
       with:
-        python-version: 3.8
+        python-version: 3.9
     - name: Install dependencies
       run: | 
         python -m pip install -e .[dev] --no-cache-dir
@@ -73,10 +73,10 @@ jobs:
       - uses: actions/checkout@v3
       - name: Pull latest changes
         run: git pull origin main
-      - name: Set up Python 3.8
+      - name: Set up Python 3.9
         uses: actions/setup-python@v2
         with:
-          python-version: 3.8
+          python-version: 3.9
       - name: Install dependencies
         run: |
           pip install --upgrade setuptools wheel twine build
diff --git a/.github/workflows/test_and_lint.yml b/.github/workflows/test_and_lint.yml
index c8d832d..171f413 100644
--- a/.github/workflows/test_and_lint.yml
+++ b/.github/workflows/test_and_lint.yml
@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [ '3.8', '3.9', '3.10' ]
+        python-version: [ '3.9', '3.10' ]
     steps:
     - uses: actions/checkout@v3
     - name: Set up Python ${{ matrix.python-version }}
@@ -18,7 +18,7 @@ jobs:
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
-      run: | 
+      run: |
         python -m pip install -e .[dev]
     - name: Run linter checks
       run: flake8 . && interrogate --verbose .