diff --git a/src/ontology/apollo_sv-edit.owl b/src/ontology/apollo_sv-edit.owl index 10bccc1..ac365b7 100644 --- a/src/ontology/apollo_sv-edit.owl +++ b/src/ontology/apollo_sv-edit.owl @@ -688,6 +688,8 @@ Declaration(Class(obo:APOLLO_SV_00000650)) Declaration(Class(obo:APOLLO_SV_00000651)) Declaration(Class(obo:APOLLO_SV_00000652)) Declaration(Class(obo:APOLLO_SV_00000653)) +Declaration(Class(obo:APOLLO_SV_00000654)) +Declaration(Class(obo:APOLLO_SV_00000655)) Declaration(Class(obo:APOLLO_SV_00000793)) Declaration(Class(obo:APOLLO_SV_00000794)) Declaration(Class(obo:APOLLO_SV_00000795)) @@ -1531,6 +1533,7 @@ Declaration(DataProperty(obo:APOLLO_SV_00000102)) Declaration(NamedIndividual(obo:APOLLO_SV_00000035)) Declaration(NamedIndividual(obo:APOLLO_SV_00000113)) Declaration(NamedIndividual(obo:UO_0000034)) +Declaration(NamedIndividual()) Declaration(AnnotationProperty(obo:APOLLO_SV_00000319)) Declaration(AnnotationProperty(obo:APOLLO_SV_00000320)) Declaration(AnnotationProperty(obo:APOLLO_SV_00000321)) @@ -1579,6 +1582,7 @@ Declaration(AnnotationProperty(dc:date)) Declaration(AnnotationProperty(dc:source)) Declaration(AnnotationProperty(dc:type)) Declaration(AnnotationProperty(terms:contributor)) +Declaration(AnnotationProperty(terms:created)) Declaration(AnnotationProperty(terms:description)) Declaration(AnnotationProperty(terms:license)) Declaration(AnnotationProperty(terms:title)) @@ -1741,11 +1745,11 @@ AnnotationAssertion(rdfs:label dc:type "dc:type") AnnotationAssertion(rdfs:label oboInOwl:hasAlternativeId "has_alternative_id") -# Annotation Property: oboInOwl:hasBroadSynonym (has broad synonym) +# Annotation Property: oboInOwl:hasBroadSynonym (has_broad_synonym) AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym") -# Annotation Property: oboInOwl:hasDbXref (database_cross_reference) +# Annotation Property: oboInOwl:hasDbXref (has cross-reference) AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference") @@ -1761,7 +1765,7 @@ AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym") AnnotationAssertion(rdfs:label oboInOwl:hasOBONamespace "has_obo_namespace") -# Annotation Property: oboInOwl:hasRelatedSynonym (has related synonym) +# Annotation Property: oboInOwl:hasRelatedSynonym (has_related_synonym) AnnotationAssertion(rdfs:label oboInOwl:hasRelatedSynonym "has_related_synonym") @@ -2205,7 +2209,7 @@ AnnotationAssertion(obo:IAO_0000412 obo:OMIABIS_0000048 "http://purl.obolibrary. AnnotationAssertion(rdfs:label obo:OMIABIS_0000048 "is owned by"@en) SubObjectPropertyOf(obo:OMIABIS_0000048 owl:topObjectProperty) -# Object Property: obo:RO_0000053 (has characteristic) +# Object Property: obo:RO_0000053 (bearer of) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000053 "bearer of"@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000053 "bearer_of"@en) @@ -8351,6 +8355,28 @@ AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000653 "human-to-human communicab SubClassOf(obo:APOLLO_SV_00000653 obo:IDO_0000623) SubClassOf(obo:APOLLO_SV_00000653 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:RO_0000057 obo:NCBITaxon_9606))))) +# Class: obo:APOLLO_SV_00000654 (historical scenario) + +AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000654 "historical infectious disease scenario date"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000654 "An infectious disease scenario that represents or reconstructs an outbreak or epidemic that actually occurred, usually constrained by observed data."@en) +AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000654 "William R. Hogan"@en) +AnnotationAssertion(dc:contributor obo:APOLLO_SV_00000654 "John Levander"@en) +AnnotationAssertion(terms:contributor obo:APOLLO_SV_00000654 ) +AnnotationAssertion(terms:created obo:APOLLO_SV_00000654 "2026-04-04T19:36:00Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000654 "historical scenario"@en) +SubClassOf(obo:APOLLO_SV_00000654 obo:APOLLO_SV_00000184) + +# Class: obo:APOLLO_SV_00000655 (hypothetical scenario) + +AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000655 "hypothetical infecctious disease scenario"@en) +AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000655 "An infectious disease scenario that represents a possible, assumed, projected, or counterfactual outbreak or epidemic, and does not need to correspond to a specific observed event."@en) +AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000655 "William R. Hogan"@en) +AnnotationAssertion(dc:contributor obo:APOLLO_SV_00000655 "John Levander"@en) +AnnotationAssertion(terms:contributor obo:APOLLO_SV_00000655 ) +AnnotationAssertion(terms:created obo:APOLLO_SV_00000655 "2026-04-04T19:52:04Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000655 "hypothetical scenario"@en) +SubClassOf(obo:APOLLO_SV_00000655 obo:APOLLO_SV_00000184) + # Class: obo:APOLLO_SV_00000793 (epidemic simulator action specification) AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000793 "epidemic simulator action specification"@en) @@ -14443,7 +14469,7 @@ AnnotationAssertion(rdfs:label "genomic d SubClassOf( obo:IAO_0000100) SubClassOf( ObjectSomeValuesFrom(obo:IAO_0000136 obo:OBI_0100026)) -# Class: oboInOwl:ObsoleteClass (obsolete_class) +# Class: oboInOwl:ObsoleteClass (Obsolete Class) AnnotationAssertion(rdfs:label oboInOwl:ObsoleteClass "Obsolete Class"@en) @@ -14467,6 +14493,12 @@ AnnotationAssertion(rdfs:comment obo:UO_0000034 "\"A time unit which is equal to AnnotationAssertion(rdfs:label obo:UO_0000034 "week") ClassAssertion(obo:UO_0000003 obo:UO_0000034) +# Individual: (William R. Hogan) + +AnnotationAssertion(terms:created "2026-04-04T19:54:38Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label "William R. Hogan"@en) +ClassAssertion(obo:NCBITaxon_9606 ) + AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:GEO_000000005 "administrativeLocations") ) \ No newline at end of file diff --git a/src/ontology/apollo_sv-idranges.owl b/src/ontology/apollo_sv-idranges.owl index 93b05d1..33fedbc 100644 --- a/src/ontology/apollo_sv-idranges.owl +++ b/src/ontology/apollo_sv-idranges.owl @@ -16,8 +16,8 @@ Ontology: Annotations: idsfor: "APOLLO_SV", - idprefix: "http://purl.obolibrary.org/obo/APOLLO_SV_", - iddigits: 7 + idprefix: "http://purl.obolibrary.org/obo/APOLLOSV_", + iddigits: 8 AnnotationProperty: idprefix: @@ -33,20 +33,20 @@ AnnotationProperty: allocatedto: Datatype: idrange:1 Annotations: - allocatedto: "ONTOLOGY-CREATOR" + allocatedto: "William Hogan" EquivalentTo: - xsd:integer[>= 0 , <= 999999] + xsd:integer[>= 0 , <= 100000] Datatype: idrange:2 Annotations: - allocatedto: "ADDITIONAL EDITOR" + allocatedto: "Matt Diller" EquivalentTo: - xsd:integer[>= 1000000 , <= 1999999] - + xsd:integer[>= 100001 , <= 200000] + Datatype: xsd:integer Datatype: rdf:PlainLiteral