README.md

DepMap Download Snakemake Pipeline

This pipeline is a template for depmap pipelines.

It currently downloads data from the DepMap portal for the Sanger Drug Combinations 2022 Release

Cleaning up the data

pixi clean

Running the pipeline

pixi install
pixi run snake

Will download all the data to rawdata/Sanger Drug Combinations 2022

If things arent working:

pixi clean && pixi clean cache -y
pixi install