build.yml

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name: breedbase build

on:
  push:
    branches:
      - develop
      - master
      - release/**
  workflow_dispatch:

jobs:
  version:
    if: github.actor != 'rob-ouser-bi'
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v2
        with:
          persist-credentials: false
          fetch-depth: 0
      - name: Get release version
        uses: actions-ecosystem/action-get-latest-tag@v1
        id: get-latest-tag
      - name: Update version
        run: sed -i -E "s/^version .*/version ${{ steps.get-latest-tag.outputs.tag }}-$GITHUB_RUN_NUMBER/" sgn.conf
      - name: Update version info
        run: sed -i -E "s/^version_updated .*/version_updated ${{ github.event.repository.updated_at}}/" sgn.conf
      - name: Commit sgn.conf
        run: |
          git config --local user.email "bidevteam@cornell.edu"
          git config --local user.name "rob-ouser-bi"
          git add .
          git commit -m "[autocommit] bumping build number"
      - name: Push changes
        uses: ad-m/github-push-action@v0.6.0
        with:
          github_token: ${{ secrets.ROB_OUSER_TOKEN }}
          branch: ${{ github.ref }}
          force: true
          
  build:
    needs: version
    runs-on: ubuntu-latest

    steps:
      - name: Free up space
        run: |
          sudo rm -rf /usr/share/dotnet
          sudo rm -rf /opt/ghc
          sudo rm -rf "/usr/local/share/boost"
          sudo rm -rf "$AGENT_TOOLSDIRECTORY"
          
      - name: Login to Docker Hub
        uses: docker/login-action@v1
        with:
          username: ${{ secrets.DOCKERHUB_USERNAME }}
          password: ${{ secrets.DOCKERHUB_PASSWORD }}

      - name: Get the sgn repo
        uses: actions/checkout@v2

#       - name: Get release version
#         uses: actions-ecosystem/action-get-latest-tag@v1
#         id: get-latest-tag

      - name: Extract branch name
        shell: bash
        run: echo ::set-output name=branch::$(echo ${GITHUB_REF#refs/heads/})
        id: extract_branch

      - name: Get breedbase_dockerfile
        if: steps.extract_branch.outputs.branch == 'develop'
        uses: actions/checkout@master
        with:
          repository: Breeding-Insight/breedbase_dockerfile
          path: breedbase_dockerfile
          ref: 'develop'
          submodules: 'recursive'
          
      - name: Get breedbase_dockerfile
        if: startsWith(steps.extract_branch.outputs.branch, 'release/')
        uses: actions/checkout@master
        with:
          repository: Breeding-Insight/breedbase_dockerfile
          path: breedbase_dockerfile
          ref: ${{ steps.extract_branch.outputs.branch }}
          submodules: 'recursive'

      - name: Get breedbase_dockerfile
        if: steps.extract_branch.outputs.branch == 'master'
        uses: actions/checkout@master
        with:
          repository: Breeding-Insight/breedbase_dockerfile
          path: breedbase_dockerfile
          ref: 'master'
          submodules: 'recursive'

      - name: Get the submodules
        working-directory: ./breedbase_dockerfile
        run: git submodule update --init --recursive

      - name: Set sgn origin
        working-directory: ./breedbase_dockerfile/cxgn/sgn
        run: |
          git remote rm origin
          git remote add origin git@github.com:Breeding-Insight/sgn.git
          git remote update

      - name: Checkout sgn branch
        working-directory: ./breedbase_dockerfile/cxgn/sgn
        run: |
          git checkout -B ${{ steps.extract_branch.outputs.branch }} origin/${{ steps.extract_branch.outputs.branch }}

      - name: Debug sgn branch
        working-directory: ./breedbase_dockerfile/cxgn/sgn
        run: git status

      - name: Set tag
        id: vars
        run: echo ::set-output name=imageName::$(echo breedinginsight/breedbase:$(sed -nE "s/^version (.*)/\1/p" sgn.conf))
        
      - name: Build Docker and push image
        working-directory: ./breedbase_dockerfile
        run: |
          docker build . --file Dockerfile --tag ${{steps.vars.outputs.imageName}}
          docker push ${{steps.vars.outputs.imageName}}
          
      - name: Tag develop
        if: steps.extract_branch.outputs.branch == 'develop'
        run: |
          docker tag ${{steps.vars.outputs.imageName}} breedinginsight/breedbase:develop
          docker push breedinginsight/breedbase:develop
          
      - name: Tag master
        if: steps.extract_branch.outputs.branch == 'master'
        run: |
          docker tag ${{steps.vars.outputs.imageName}} breedinginsight/breedbase:latest
          docker push breedinginsight/breedbase:latest

      - name: Tag release
        if: contains(github.ref, '/release/')
        run: |
          docker tag ${{steps.vars.outputs.imageName}} breedinginsight/breedbase:rc
          docker push breedinginsight/breedbase:rc