Merge pull request #51 from CEGRcode/code-cleanup

Code cleanup

Author: owlang

README.md

@@ -12,7 +12,7 @@ Scripts are generically categorized within semi-descriptive tabs and are designe
 
 The compiled JAR file will be output into the `build/libs` directory. 
 
-## Current scripts available (181101):
+## Current scripts available (210106):
 
 **BAM Statistics:**
 
@@ -109,4 +109,4 @@ The compiled JAR file will be output into the `build/libs` directory.
 
   -Merge Heatmaps
 
-  -4Color Sequence Plot
+  -4Color Sequence Plot

src/cli/BAM_Format_Converter/BAMtoBEDCLI.java

@@ -1,6 +1,5 @@
 package cli.BAM_Format_Converter;
 
-import picocli.CommandLine;
 import picocli.CommandLine.ArgGroup;
 import picocli.CommandLine.Command;
 import picocli.CommandLine.Option;

src/cli/BAM_Format_Converter/BAMtoGFFCLI.java

@@ -1,6 +1,5 @@
 package cli.BAM_Format_Converter;
 
-import picocli.CommandLine;
 import picocli.CommandLine.ArgGroup;
 import picocli.CommandLine.Command;
 import picocli.CommandLine.Option;

src/cli/BAM_Format_Converter/BAMtobedGraphCLI.java

@@ -1,6 +1,5 @@
 package cli.BAM_Format_Converter;
 
-import picocli.CommandLine;
 import picocli.CommandLine.ArgGroup;
 import picocli.CommandLine.Command;
 import picocli.CommandLine.Option;

src/cli/BAM_Format_Converter/BAMtoscIDXCLI.java

@@ -1,6 +1,5 @@
 package cli.BAM_Format_Converter;
 
-import picocli.CommandLine;
 import picocli.CommandLine.ArgGroup;
 import picocli.CommandLine.Command;
 import picocli.CommandLine.Option;

src/cli/BAM_Manipulation/BAIIndexerCLI.java

@@ -1,6 +1,5 @@
 package cli.BAM_Manipulation;
 
-import picocli.CommandLine;
 import picocli.CommandLine.Command;
 
 import java.util.concurrent.Callable;

src/cli/BAM_Manipulation/BAMRemoveDupCLI.java

@@ -1,6 +1,5 @@
 package cli.BAM_Manipulation;
 
-import picocli.CommandLine;
 import picocli.CommandLine.Command;
 
 import java.util.concurrent.Callable;

src/cli/BAM_Manipulation/FilterforPIPseqCLI.java

@@ -1,6 +1,5 @@
 package cli.BAM_Manipulation;
 
-import picocli.CommandLine;
 import picocli.CommandLine.Command;
 import picocli.CommandLine.Option;
 import picocli.CommandLine.Parameters;

src/cli/BAM_Manipulation/MergeBAMCLI.java

@@ -1,6 +1,5 @@
 package cli.BAM_Manipulation;
 
-import picocli.CommandLine;
 import picocli.CommandLine.Command;
 
 import java.util.concurrent.Callable;

src/cli/BAM_Manipulation/SortBAMCLI.java

@@ -1,6 +1,5 @@
 package cli.BAM_Manipulation;
 
-import picocli.CommandLine;
 import picocli.CommandLine.Command;
 
 import java.util.concurrent.Callable;