diff --git a/Makefile b/Makefile
index 6d2086fc0..91f8d36d0 100644
--- a/Makefile
+++ b/Makefile
@@ -314,7 +314,7 @@ suball.collapse-bubble:
 	chmod +x submodules/collapse-bubble/scripts/merge_duplicates.py
 	ln -f submodules/collapse-bubble/scripts/merge_duplicates.py ${BINDIR}
 suball.FASTGA:
-	cd submodules/FASTGA && ${MAKE}
+	cd submodules/FASTGA && sed -i '/-lpthread/!s/-lm -lz/-lpthread -lm -lz/g' Makefile && ${MAKE}
 	ln -f submodules/FASTGA/FastGA ${BINDIR}
 	ln -f submodules/FASTGA/ALNtoPAF ${BINDIR}
 	ln -f submodules/FASTGA/FAtoGDB ${BINDIR}
diff --git a/submodules/FASTAN b/submodules/FASTAN
index d27f8187c..89ea226e8 160000
--- a/submodules/FASTAN
+++ b/submodules/FASTAN
@@ -1 +1 @@
-Subproject commit d27f8187c40fbb3e0d98502fcd85ba31f1b88630
+Subproject commit 89ea226e8356fdea15a74ac14a8385c46837a9be
diff --git a/submodules/FASTGA b/submodules/FASTGA
index 26744e1ee..567135715 160000
--- a/submodules/FASTGA
+++ b/submodules/FASTGA
@@ -1 +1 @@
-Subproject commit 26744e1eee77c81ca2f92b9598a35b1c92ce70a6
+Subproject commit 5671357153851ea67b612d0400ba646947bd647e
diff --git a/submodules/alntools b/submodules/alntools
index 233bf8bde..aa4333d03 160000
--- a/submodules/alntools
+++ b/submodules/alntools
@@ -1 +1 @@
-Subproject commit 233bf8bde302d1f7ec91e43170f3af6e35d36161
+Subproject commit aa4333d03c47280e3012d4db6f7d897a79e00051