diff --git a/pilotpy/tools/patients_sub_clustering.py b/pilotpy/tools/patients_sub_clustering.py index 648d3bc..e4d1539 100644 --- a/pilotpy/tools/patients_sub_clustering.py +++ b/pilotpy/tools/patients_sub_clustering.py @@ -189,7 +189,7 @@ def compute_diff_expressions(adata,cell_type: str = None, pandas2ri.activate() # prepare data for R - proportions.index = proportions['sampIeD'] + proportions.index = proportions['sampleID'] if selected_genes is None: selected_genes = cells.iloc[:,1:-1].columns @@ -197,7 +197,7 @@ def compute_diff_expressions(adata,cell_type: str = None, pred_labels = pd.DataFrame() pls = proportions.loc[cells['sampleID']] pred_labels['Predicted_Labels'] = pls[label_name] - pred_labels['sampleID'] = pls['sampIeD'] + pred_labels['sampleID'] = pls['sampleID'] # load R packages and data R=robjects.r