feat(deltakit): Replace stim imports with deltakit_stim

[rolandriver]

🔗 Closed Issues

Closes #248

For ease of review, here is the detail:

• stim imports replaced by deltakit_stim everywhere (519d90f, b8491e9, b42212c) and ruff autoformatting (742a780)
• Doc fixes (3191393, 29a686d, a85e242, f5e8d68)
• Other commits mainly address failing tests (c761db0, 6a9bebc), updating baselines (33bcd48, 6f16e87, 68f4997), removing stim guard in tests (07926af) and main merges (c4e991c, add7d83)

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📝 Description

This PR addresses replacing all stim imports with deltakit_stim imports

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🚦 Status

Ready to review.

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🛠️ Future Work

Further work is needed as to properly implement kernel computation for logicals as the method used from ldpc fell in the deltakit_stim/stim incompatibility.

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➕️ Additional Information

NA.

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[github-actions]

File	Coverage		Missing
All files	84%	❌
deltakit-circuit/src/deltakit_circuit/_noise_layer.py	97%	✅	218 272
deltakit-circuit/src/deltakit_circuit/_qubit_identifiers.py	98%	✅	182-187
deltakit-circuit/src/deltakit_circuit/_stim_version_compatibility.py	81%	❌	11-12
deltakit-circuit/src/deltakit_circuit/_annotations/_observable.py	97%	✅	90
deltakit-circuit/src/deltakit_circuit/_annotations/_shift_coordinates.py	95%	✅	66

Minimum allowed coverage is 95%

Generated by 🐒 cobertura-action against b42212c