MoonlightR/NEWS at master · ELELAB/MoonlightR · GitHub

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  MoonlightR

CHANGES IN VERSION 1.26.1
-------------------------

BUG FIX

    o changed arguments for downloading datasets following updates to TCGAbiolinks
    o added suggested package to fix install crash

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  FIRST VERSION - FEATURES

* dataFilt	Gene Expression (Rnaseqv2) data from TCGA LUAD
* dataGRN	GRN gene regulatory network output
* dataURA	Output example from function Upstram Regulator Analysis
* DEGsmatrix	DEG Differentially expressed genes
* DiseaseList	Information on 101 biological processes
* DPA	DPA
* EAGenes	Information about genes
* FEA	FEA
* GDCprojects	Information on GDC projects
* geneInfo	Information about genes for normalization
* GEO_TCGAtab	Information on GEO data (and overlap with TCGA)
* getDataGEO	getDataGEO
* getDataTCGA	getDataTCGA
* GRN	Generate network
* GSEA	GSEA
* knownDriverGenes	Information on known cancer driver gene from COSMIC
* listMoonlight	Output list from Moonlight
* LPA	LPA
* moonlight	moonlight pipeline
* MoonlightR	MoonlightR
* PEA	PEA
* plotCircos	plotCircos
* plotFEA	plotFEA
* plotNetworkHive	plotNetworkHive: Hive network plot
* plotURA	plotURA: Upstream regulatory analysis heatmap plot
* PRA	Pattern Recognition Analysis (PRA)
* tabGrowBlock	Information growing/blocking characteristics for 101 selected biological processes
* URA	URA Upstream Regulator Analysis