diff --git a/.gitignore b/.gitignore index c0f5b642..a6681ce0 100644 --- a/.gitignore +++ b/.gitignore @@ -32,4 +32,7 @@ env.bak/ venv.bak/ # Local simulations -Suite_*/ \ No newline at end of file +LOCAL_EXP_PATH.txt +docker_suites/ +local_python/container_assets/Eradication +local_python/container_assets/schema.json diff --git a/README.md b/README.md index 4d4f2cb3..a071f43d 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ # EMOD-Generic-Scripts -See documentation at https://emod-hub.github.io/EMOD-Generic-Scripts/ for additional information. +See documentation at https://emod.idmod.org/EMOD-Generic-Scripts for additional information. ## Contents: @@ -9,19 +9,17 @@ See documentation at https://emod-hub.github.io/EMOD-Generic-Scripts/ for additi | --- | --- | | env_Alma10
env_Amazon2023
env_Debian13
env_Fedora42
env_Rocky10
env_Ubuntu26 | Definition files for Apptainer containers with various operating systems. Produces the the EMOD executable and schema file; creates an environment for running EMOD on COMPS with the python packages available to the embedded python interpreter. All files remain on COMPS and are provided to the various workflows as Asset Collection IDs. | | local_python | Contains additional python scripts with helper functions common to all of the workflows. | -| model_covariance01 | [Demonstration simulations for heterogeneity in individual behavior.](https://docs.idmod.org/projects/emod-generic-scripts/en/latest/examples/model_covariance01.html) | -| model_covid01 | Baseline simulations for SARS-CoV-2 in EMOD. Collab with MvG. | +| model_covariance01 | [Demonstration simulations for heterogeneity in individual behavior.](https://emod.idmod.org/EMOD-Generic-Scripts/examples/model_covariance01/) | +| model_covid01 | Baseline simulations for SARS-CoV-2 in EMOD. | | model_demographics01 | Example demographics for UK measles simulations. | -| model_demographics_wpp01 | [Example demographics using UN WPP data as inputs.](https://docs.idmod.org/projects/emod-generic-scripts/en/latest/examples/model_demographics_wpp01.html) | +| model_demographics_wpp01 | [Example demographics using UN WPP data as inputs.](https://emod.idmod.org/EMOD-Generic-Scripts/examples/model_demographics_wpp01/) | +| model_measles | [Estimates of measles burden under various policies for age of MCV1.](https://emod.idmod.org/EMOD-Generic-Scripts/examples/model_measles/) | | model_measles_cod01 | Documentation. | -| model_measles_gha01 | [Examination of RDT use and measles outbreak response using Ghana as an example context.](https://docs.idmod.org/projects/emod-generic-scripts/en/latest/examples/model_measles_gha01.html) | -| model_measles_nga01 | Documentation. | -| model_measles_nga02 | Documentation. | -| model_measles01 | [Estimates of measles burden under various policies for age of MCV1.](https://docs.idmod.org/projects/emod-generic-scripts/en/latest/examples/model_measles01.html) | -| model_network01 | [Demonstration simulations for transmission of infectivity on a network.](https://docs.idmod.org/projects/emod-generic-scripts/en/latest/examples/model_network01.html) | +| model_measles_gha01 | [Examination of RDT use and measles outbreak response using Ghana as an example context.](https://emod.idmod.org/EMOD-Generic-Scripts/examples/model_measles_gha01/) | +| model_network01 | [Demonstration simulations for transmission of infectivity on a network.](https://emod.idmod.org/EMOD-Generic-Scripts/examples/model_network01/) | | model_polio_nga01 | [Example outbreak simulations for cVDPV2 in Nigeria.](https://docs.idmod.org/projects/emod-generic-scripts/en/latest/examples/model_polio_nga01.html) | -| model_rubella01 | [Projections of rubella infections and estimates of CRS burden following RCV introduction.](https://docs.idmod.org/projects/emod-generic-scripts/en/latest/examples/model_rubella01.html) | -| model_transtree01 | [Demonstration of the infector labeling feature and generation of explicit transmission networks.](https://docs.idmod.org/projects/emod-generic-scripts/en/latest/examples/model_transtree01.html) | +| model_rubella01 | [Projections of rubella infections and estimates of CRS burden following RCV introduction.](https://emod.idmod.org/EMOD-Generic-Scripts/examples/model_rubella01/) | +| model_transtree01 | [Demonstration of the infector labeling feature and generation of explicit transmission networks.](https://emod.idmod.org/EMOD-Generic-Scripts/examples/model_transtree01/) | | refdat_mcv1 | IHME MCV1 coverage estimates used to construct input files for EMOD simulations. | | refdat_namesets | Namesets used for region identification. | | refdat_poppyr | UN WPP age structured population estimates used to construct input files for EMOD simulations. | @@ -69,17 +67,6 @@ To build the documentation locally, do the following: --------------------- -## Disclaimer - -The code in this repository was developed by IDM and other collaborators to support our -joint research on flexible agent-based modeling. We've made it publicly available under -the MIT License to provide others with a better understanding of our research and an -opportunity to build upon it for their own work. We make no representations that the code -works as intended or that we will provide support, address issues that are found, or accept -pull requests. You are welcome to create your own fork and modify the code to suit your own -modeling needs as permitted under the MIT License. - - ## Project status EMOD-Hub projects are provided as open source software under the MIT License for diff --git a/docker/emod_env/Dockerfile b/docker/emod_env/Dockerfile deleted file mode 100644 index b2bb276a..00000000 --- a/docker/emod_env/Dockerfile +++ /dev/null @@ -1,16 +0,0 @@ -FROM ubuntu:24.04 -# -RUN apt-get update -RUN apt-get upgrade -y -# -RUN apt-get install -y python3 -RUN apt-get install -y python3-pip -RUN apt-get install -y python3-venv -RUN apt-get install -y mpich -# -RUN apt-get clean -# -RUN python3 -m venv py_env -# -RUN py_env/bin/pip3 install pip --upgrade -RUN py_env/bin/pip3 install emod-api~=3.1 diff --git a/docker/emod_exe/Dockerfile b/docker/emod_exe/Dockerfile deleted file mode 100644 index a08c43a0..00000000 --- a/docker/emod_exe/Dockerfile +++ /dev/null @@ -1,31 +0,0 @@ -FROM ubuntu:24.04 -# -RUN apt-get update -RUN apt-get upgrade -y -# -RUN apt-get install -y python3-dev -RUN apt-get install -y libmpich-dev -RUN apt-get install -y libsqlite3-dev -RUN apt-get install -y git -RUN apt-get install -y libc-dev -RUN apt-get install -y g++ -# -RUN apt-get install -y scons -# -RUN apt-get clean -# -RUN git clone https://github.com/EMOD-Hub/EMOD-Generic -# -RUN git --git-dir=/EMOD-Generic/.git fetch -RUN git --git-dir=/EMOD-Generic/.git checkout Generic-Ongoing -# -ARG USER=DockerComposeUser -# -RUN scons --Release --jobs=4 --Disease=Generic --directory=/EMOD-Generic/ -# -RUN mkdir outputs -RUN cp EMOD-Generic/build/x64/Release/Eradication/Eradication outputs/Eradication -# -RUN outputs/Eradication --get-schema --schema-path outputs/schema.json -P EMOD-Generic/Scripts -# -RUN rm -r EMOD-Generic diff --git a/docker/emodpy/Dockerfile b/docker/emodpy/Dockerfile index 1ba0899b..25503a80 100644 --- a/docker/emodpy/Dockerfile +++ b/docker/emodpy/Dockerfile @@ -1,11 +1,11 @@ -FROM ubuntu:24.04 +FROM ubuntu:26.04 # RUN apt-get update RUN apt-get -y upgrade # -RUN apt-get -y install python3 -RUN apt-get -y install python3-pip -RUN apt-get -y install python3-venv +RUN apt-get install -y python3 +RUN apt-get install -y python3-pip +RUN apt-get install -y python3-venv # RUN apt-get clean # @@ -14,4 +14,4 @@ RUN python3 -m venv $PY_VENV ENV PATH="$PY_VENV/bin:$PATH" # RUN pip3 install pip --upgrade -RUN pip3 install emodpy~=3.1 +RUN pip3 install emodpy~=3.2 diff --git a/docs/bib.md b/docs/bib.md index 75325248..b7540f7f 100644 --- a/docs/bib.md +++ b/docs/bib.md @@ -1,10 +1,7 @@ -[emod-api]: https://emod-hub.github.io/emod-api/ -[emod-generic]: https://emod-hub.github.io/EMOD-Generic/ -[emodpy]: https://emod-hub.github.io/emodpy/ -[emodpy-hiv]: https://emod-hub.github.io/emodpy-hiv/ -[emodpy-malaria]: https://emod-hub.github.io/emodpy-malaria/ +[emod-api]: https://emod.idmod.org/emod-api/ +[emod-generic]: https://emod.idmod.org/EMOD-Generic/ +[emodpy]: https://emod.idmod.org/emodpy/ +[emodpy-hiv]: https://emod.idmod.org/emodpy-hiv/ +[emodpy-malaria]: https://emod.idmod.org/emodpy-malaria/ [idmod]: https://www.idmod.org/ -[idmtools]: https://docs.idmod.org/projects/idmtools/ -[idmtools_cli]: https://docs.idmod.org/projects/idmtools/en/latest/cli/cli_index.html -[idmtools_config]: https://docs.idmod.org/projects/idmtools/en/latest/configuration.html -[idm_pypi]: https://packages.idmod.org/ +[idmtools]: https://docs.idmod.org/idmtools/ diff --git a/docs/examples/figures/ref_gha_obr_contours.png b/docs/examples/figures/ref_gha_obr_contours.png index c883b447..6a5ca8c8 100644 Binary files a/docs/examples/figures/ref_gha_obr_contours.png and b/docs/examples/figures/ref_gha_obr_contours.png differ diff --git a/docs/examples/figures/ref_gha_timeseries.png b/docs/examples/figures/ref_gha_timeseries.png index 1e6944ea..a3701dc4 100644 Binary files a/docs/examples/figures/ref_gha_timeseries.png and b/docs/examples/figures/ref_gha_timeseries.png differ diff --git a/docs/examples/model_measles01.md b/docs/examples/model_measles.md similarity index 100% rename from docs/examples/model_measles01.md rename to docs/examples/model_measles.md diff --git a/docs/examples/model_measles_gha01.md b/docs/examples/model_measles_gha01.md index 9cfecc8c..8f18fabc 100644 --- a/docs/examples/model_measles_gha01.md +++ b/docs/examples/model_measles_gha01.md @@ -14,11 +14,11 @@ Measles infectivity moved between nodes based on a gravity-type network model. A Each agent represented 25 individuals. Prevalence could fall to zero during the simulation, but exogeneous importation ensured long-term elimination did not occur. Importation probability was proportional to population. Simulations started in 2008. Outputs prior to 2011 were ignored because initial measles immunity is only roughly approximate and a few years of simulated time are required to establish internal consistency. Each simulation time step represents 5 days. -Parameters in the baseline model were adjusted to fit observed timeseries of measles incidence. A Poisson-based likelihood function was maximized over one free parameter that scales total incidence and was interpreted as a reporting rate. +Parameters in the baseline model were adjusted to fit observed timeseries of measles incidence. A Poisson-based likelihood function was maximized over two free parameters that scale total incidence; this scaling was interpreted as a reporting rate. ![Figure 3: Baseline timeseries and reporting rate](figures/ref_gha_timeseries.png) -Posterior estimates suggest around 4% of measles infections are captured in case reports. +Posterior estimates suggest around 2% of measles infections are captured in case reports, and a modest annual improvement to the reporting rate. Test scenarios implemented hypothetical regional outbreak response SIAs starting in 2022. These responses were triggered based on varying thresholds of observed cases. Spatially heterogeneous reporting rates were assumed with a mean reporting rate of 4% diff --git a/docs/examples/model_measles_nga01.md b/docs/examples/model_measles_nga01.md deleted file mode 100644 index f57c660e..00000000 --- a/docs/examples/model_measles_nga01.md +++ /dev/null @@ -1 +0,0 @@ -# Measles - NGA 01 diff --git a/docs/examples/model_measles_nga02.md b/docs/examples/model_measles_nga02.md deleted file mode 100644 index b4873e75..00000000 --- a/docs/examples/model_measles_nga02.md +++ /dev/null @@ -1 +0,0 @@ -# Measles - NGA 02 diff --git a/local_python/container_assets/Dockerfile b/local_python/container_assets/Dockerfile new file mode 100644 index 00000000..20ce84f2 --- /dev/null +++ b/local_python/container_assets/Dockerfile @@ -0,0 +1,3 @@ +FROM ghcr.io/emod-hub/emod-ubuntu-runtime:latest +# +RUN pip3 install emod-api~=3.1 diff --git a/local_python/container_assets/Eradication b/local_python/container_assets/Eradication deleted file mode 100644 index 0a310cc6..00000000 Binary files a/local_python/container_assets/Eradication and /dev/null differ diff --git a/local_python/container_assets/README.md b/local_python/container_assets/README.md new file mode 100644 index 00000000..53724399 --- /dev/null +++ b/local_python/container_assets/README.md @@ -0,0 +1,7 @@ +## Local execution + +This directory is the destination for an executable and schema extracted to from the emod-generic Python package. +These files are only used when running locally via Docker Desktop, and require the `local` optional dependencies +to also be installed. + +The Dockerfile in this directory is used to add the emod-api package to the default EMOD-Hub runtime environment. diff --git a/local_python/container_assets/schema.json b/local_python/container_assets/schema.json deleted file mode 100644 index 42e39a8f..00000000 --- a/local_python/container_assets/schema.json +++ /dev/null @@ -1,19418 +0,0 @@ -{ - "Version": { - "DTK_Branch": "Generic-Ongoing(cc21d557)", - "DTK_Build_Date": "Apr 5 2026 20:09:55", - "DTK_Version": "2.22.31", - "Supported_Simulation_Types": "GENERIC" - }, - "config": { - "AgentConfig": { - "Acquisition_Transmission_Correlation": { - "default": 0, - "depends-on": { - "Enable_Acquisition_Heterogeneity": 1, - "Enable_Demographics_Builtin": 0, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Correlation between an agent's acquisition probability multiplier and the infectivity of infections acquired by that agent.", - "max": 1, - "min": 0, - "type": "float" - }, - "Base_Infectivity_Constant": { - "default": -1, - "depends-on": { - "Base_Infectivity_Distribution": "CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to all individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Base_Infectivity_Distribution": { - "default": "NOT_INITIALIZED", - "depends-on": { - "Simulation_Type": "GENERIC_SIM,STI_SIM,HIV_SIM,VECTOR_SIM,AIRBORNE_SIM,TBHIV_SIM,ENVIRONMENTAL_SIM,PY_SIM" - }, - "description": "The distribution type to use when assigning a quantity of infectivity to an infection.", - "enum": [ - "NOT_INITIALIZED", - "CONSTANT_DISTRIBUTION", - "UNIFORM_DISTRIBUTION", - "EXPONENTIAL_DISTRIBUTION", - "GAMMA_DISTRIBUTION", - "LOG_NORMAL_DISTRIBUTION" - ], - "type": "enum" - }, - "Base_Infectivity_Exponential": { - "default": -1, - "depends-on": { - "Base_Infectivity_Distribution": "EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean for an exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Base_Infectivity_Log_Normal_Mu": { - "default": 3.402823466e+38, - "depends-on": { - "Base_Infectivity_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The mean for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Base_Infectivity_Log_Normal_Sigma": { - "default": 3.402823466e+38, - "depends-on": { - "Base_Infectivity_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The width for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Base_Infectivity_Max": { - "default": -1, - "depends-on": { - "Base_Infectivity_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The maximum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Base_Infectivity_Min": { - "default": -1, - "depends-on": { - "Base_Infectivity_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The minimum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Base_Infectivity_Scale": { - "default": 1, - "depends-on": { - "Base_Infectivity_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The scale parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Base_Infectivity_Shape": { - "default": 1, - "depends-on": { - "Base_Infectivity_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The shape parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Enable_Genome_Dependent_Infectivity": { - "default": 0, - "depends-on": { - "Enable_Strain_Tracking": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Indicates if infectivity should be adjusted based on infection genome value.", - "type": "bool" - }, - "Enable_Genome_Mutation": { - "default": 0, - "depends-on": { - "Enable_Strain_Tracking": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Indicates if infection genome value should vary with simulation time.", - "type": "bool" - }, - "Enable_Label_By_Infector": { - "default": 0, - "depends-on": { - "Enable_Strain_Tracking": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Indicates if an infection should be labeled with the unique identifer of the agent that transmits the infection.", - "type": "bool" - }, - "Enable_Label_By_Mutator": { - "default": 0, - "depends-on": { - "Enable_Genome_Mutation": 1, - "Enable_Strain_Tracking": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Indicates if an infection should be labeled with the unique identifer of the agent infected at time of mutation.", - "type": "bool" - }, - "Enable_Nonuniform_Shedding": { - "default": 0, - "depends-on": { - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Indicates if the time course of infectivity shedding for an infected individual should follow the probability density function of a beta distribution; uniform shedding otherwise.", - "type": "bool" - }, - "Enable_Strain_Tracking": { - "default": 0, - "description": "Controls if infections are differentiated by clades and genomes.", - "type": "bool" - }, - "Genome_Infectivity_Multipliers": { - "ascending": 0, - "default": [], - "depends-on": { - "Enable_Genome_Dependent_Infectivity": 1, - "Enable_Strain_Tracking": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "List of multipliers used to adjust infectivity based on infection genome value.", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "Genome_Mutation_Rates": { - "ascending": 0, - "default": [], - "depends-on": { - "Enable_Genome_Mutation": 1, - "Enable_Strain_Tracking": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "List of per-day rates for incrementing an infection's genome value. Maximum one increment per timestep.", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "Genome_Mutations_Labeled": { - "default": [], - "depends-on": { - "Enable_Genome_Mutation": 1, - "Enable_Label_By_Mutator": 1, - "Enable_Strain_Tracking": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "List of enable values indicating if the corresponding genome value is labeled after mutation. Indicators are with respect to post-mutation genome value.", - "type": "Vector Bool" - }, - "Incubation_Period_Constant": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to all individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Incubation_Period_Distribution": { - "default": "NOT_INITIALIZED", - "depends-on": { - "Simulation_Type": "GENERIC_SIM,STI_SIM,VECTOR_SIM,DENGUE_SIM,MALARIA_SIM,AIRBORNE_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,TYPHOID_SIM,PY_SIM" - }, - "description": "The distribution type to use for assigning the incubation period to each individual in the population.", - "enum": [ - "NOT_INITIALIZED", - "CONSTANT_DISTRIBUTION", - "UNIFORM_DISTRIBUTION", - "GAUSSIAN_DISTRIBUTION", - "EXPONENTIAL_DISTRIBUTION", - "POISSON_DISTRIBUTION", - "LOG_NORMAL_DISTRIBUTION", - "DUAL_CONSTANT_DISTRIBUTION", - "WEIBULL_DISTRIBUTION", - "DUAL_EXPONENTIAL_DISTRIBUTION", - "GAMMA_DISTRIBUTION" - ], - "type": "enum" - }, - "Incubation_Period_Exponential": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean for an exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Incubation_Period_Gaussian_Mean": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The mean for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Incubation_Period_Gaussian_Std_Dev": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The standard deviation for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Incubation_Period_Kappa": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The shape value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Incubation_Period_Lambda": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The scale value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Incubation_Period_Log_Normal_Mu": { - "default": 3.402823466e+38, - "depends-on": { - "Incubation_Period_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The mean for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Incubation_Period_Log_Normal_Sigma": { - "default": 3.402823466e+38, - "depends-on": { - "Incubation_Period_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The width for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Incubation_Period_Max": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The maximum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Incubation_Period_Mean_1": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the first exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Incubation_Period_Mean_2": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the second exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Incubation_Period_Min": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The minimum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Incubation_Period_Peak_2_Value": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to the remaining individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Incubation_Period_Poisson_Mean": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "POISSON_DISTRIBUTION" - }, - "description": "The mean for a Poisson distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Incubation_Period_Proportion_0": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The proportion of individuals to assign a value of zero.", - "max": 1, - "min": 0, - "type": "float" - }, - "Incubation_Period_Proportion_1": { - "default": -1, - "depends-on": { - "Incubation_Period_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The proportion of individuals in the first exponential distribution.", - "max": 1, - "min": 0, - "type": "float" - }, - "Incubation_Period_Scale": { - "default": 1, - "depends-on": { - "Incubation_Period_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The scale parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Incubation_Period_Shape": { - "default": 1, - "depends-on": { - "Incubation_Period_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The shape parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Infectious_Period_Constant": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to all individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Infectious_Period_Distribution": { - "default": "NOT_INITIALIZED", - "depends-on": { - "Simulation_Type": "GENERIC_SIM,STI_SIM,VECTOR_SIM,AIRBORNE_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,PY_SIM" - }, - "description": "The distribution type to use for assigning the infectious period to each individual in the population.", - "enum": [ - "NOT_INITIALIZED", - "CONSTANT_DISTRIBUTION", - "UNIFORM_DISTRIBUTION", - "GAUSSIAN_DISTRIBUTION", - "EXPONENTIAL_DISTRIBUTION", - "POISSON_DISTRIBUTION", - "LOG_NORMAL_DISTRIBUTION", - "DUAL_CONSTANT_DISTRIBUTION", - "WEIBULL_DISTRIBUTION", - "DUAL_EXPONENTIAL_DISTRIBUTION", - "GAMMA_DISTRIBUTION" - ], - "type": "enum" - }, - "Infectious_Period_Exponential": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean for an exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Infectious_Period_Gaussian_Mean": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The mean for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Infectious_Period_Gaussian_Std_Dev": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The standard deviation for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Infectious_Period_Kappa": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The shape value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Infectious_Period_Lambda": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The scale value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Infectious_Period_Log_Normal_Mu": { - "default": 3.402823466e+38, - "depends-on": { - "Infectious_Period_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The mean for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Infectious_Period_Log_Normal_Sigma": { - "default": 3.402823466e+38, - "depends-on": { - "Infectious_Period_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The width for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Infectious_Period_Max": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The maximum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Infectious_Period_Mean_1": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the first exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Infectious_Period_Mean_2": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the second exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Infectious_Period_Min": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The minimum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Infectious_Period_Peak_2_Value": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to the remaining individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Infectious_Period_Poisson_Mean": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "POISSON_DISTRIBUTION" - }, - "description": "The mean for a Poisson distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Infectious_Period_Proportion_0": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The proportion of individuals to assign a value of zero.", - "max": 1, - "min": 0, - "type": "float" - }, - "Infectious_Period_Proportion_1": { - "default": -1, - "depends-on": { - "Infectious_Period_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The proportion of individuals in the first exponential distribution.", - "max": 1, - "min": 0, - "type": "float" - }, - "Infectious_Period_Scale": { - "default": 1, - "depends-on": { - "Infectious_Period_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The scale parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Infectious_Period_Shape": { - "default": 1, - "depends-on": { - "Infectious_Period_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The shape parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Maternal_Acquire_Config": { - "depends-on": { - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Waning effect configuration for on-birth acquisition immunity.", - "type": "idmType:WaningEffect" - }, - "Mortality_Time_Course": { - "default": "DAILY_MORTALITY", - "depends-on": { - "Enable_Disease_Mortality": 1 - }, - "description": "The method used to calculate disease deaths: on every time step or once at the end of the disease duration.", - "enum": [ - "DAILY_MORTALITY", - "MORTALITY_AFTER_INFECTIOUS" - ], - "type": "enum" - }, - "Shedding_Distribution_Alpha": { - "default": 1, - "depends-on": { - "Enable_Nonuniform_Shedding": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Alpha parameter for the beta distribution probability density function describing the time course of infectivity shedding by an infected individual.", - "max": 3.402823466e+38, - "min": 1, - "type": "float" - }, - "Shedding_Distribution_Beta": { - "default": 1, - "depends-on": { - "Enable_Nonuniform_Shedding": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Beta parameter for the beta distribution probability density function describing the time course of infectivity shedding by an infected individual.", - "max": 3.402823466e+38, - "min": 1, - "type": "float" - }, - "Symptomatic_Infectious_Offset": { - "default": 0, - "depends-on": { - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Amount of time, in days, after the infectious period starts that symptoms appear.", - "max": 3.402823466e+38, - "min": -3.402823466e+38, - "type": "float" - } - }, - "ClimateConfig": { - "Air_Temperature_Filename": { - "default": "", - "depends-on": { - "Climate_Model": "CLIMATE_BY_DATA", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The path to the input data file defining air temperature data measured 2 meters above ground.", - "type": "string" - }, - "Air_Temperature_Offset": { - "default": 0, - "depends-on": { - "Climate_Model": "CLIMATE_BY_DATA", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The linear shift of air temperature in degrees Celsius.", - "max": 20, - "min": -20, - "type": "float" - }, - "Air_Temperature_Variance": { - "default": 2, - "depends-on": { - "Climate_Model": "CLIMATE_CONSTANT,CLIMATE_BY_DATA", - "Enable_Climate_Stochasticity": 1, - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The standard deviation (in degrees Celsius) for normally distributed noise applied to the daily air temperature values when Climate_Model is configured as CLIMATE_CONSTANT or CLIMATE_BY_DATA.", - "max": 5, - "min": 0, - "type": "float" - }, - "Base_Air_Temperature": { - "default": 22, - "depends-on": { - "Climate_Model": "CLIMATE_CONSTANT", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The air temperature, in degrees Celsius, where Climate_Model is set to CLIMATE_CONSTANT.", - "max": 45, - "min": -55, - "type": "float" - }, - "Base_Land_Temperature": { - "default": 26, - "depends-on": { - "Climate_Model": "CLIMATE_CONSTANT", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The land temperature, in degrees Celsius, where Climate_Model is set to CLIMATE_CONSTANT.", - "max": 60, - "min": -55, - "type": "float" - }, - "Base_Rainfall": { - "default": 10, - "depends-on": { - "Climate_Model": "CLIMATE_CONSTANT", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The value of rainfall per day in millimeters when Climate_Model is set to CLIMATE_CONSTANT.", - "max": 150, - "min": 0, - "type": "float" - }, - "Base_Relative_Humidity": { - "default": 0.75, - "depends-on": { - "Climate_Model": "CLIMATE_CONSTANT", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The value of humidity where Climate_Model is set to CLIMATE_CONSTANT.", - "max": 1, - "min": 0, - "type": "float" - }, - "Climate_Model": { - "default": "CLIMATE_OFF", - "depends-on": { - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "How and from what files the climate of a simulation is configured.", - "enum": [ - "CLIMATE_OFF", - "CLIMATE_CONSTANT", - "CLIMATE_KOPPEN", - "CLIMATE_BY_DATA" - ], - "type": "enum" - }, - "Climate_Update_Resolution": { - "default": "CLIMATE_UPDATE_YEAR", - "depends-on": { - "Climate_Model": "CLIMATE_CONSTANT,CLIMATE_BY_DATA,CLIMATE_KOPPEN", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The resolution for data in climate files.", - "enum": [ - "CLIMATE_UPDATE_YEAR", - "CLIMATE_UPDATE_MONTH", - "CLIMATE_UPDATE_WEEK", - "CLIMATE_UPDATE_DAY", - "CLIMATE_UPDATE_HOUR" - ], - "type": "enum" - }, - "Enable_Climate_Stochasticity": { - "default": 0, - "depends-on": { - "Climate_Model": "CLIMATE_CONSTANT,CLIMATE_BY_DATA", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "Controls whether or not the climate has stochasticity.", - "type": "bool" - }, - "Enable_Rainfall_Stochasticity": { - "default": 1, - "depends-on": { - "Climate_Model": "CLIMATE_CONSTANT,CLIMATE_BY_DATA", - "Enable_Climate_Stochasticity": 1, - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "Controls whether or not there is stochastic variation in rainfall.", - "type": "bool" - }, - "Koppen_Filename": { - "default": "", - "depends-on": { - "Climate_Model": "CLIMATE_KOPPEN", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "Path to input file used to specify Koppen climate classifications.", - "type": "string" - }, - "Land_Temperature_Filename": { - "default": "", - "depends-on": { - "Climate_Model": "CLIMATE_BY_DATA", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "Path of input file defining temperature data measured at land surface.", - "type": "string" - }, - "Land_Temperature_Offset": { - "default": 0, - "depends-on": { - "Climate_Model": "CLIMATE_BY_DATA", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The linear shift of land surface temperature in degrees Celsius.", - "max": 20, - "min": -20, - "type": "float" - }, - "Land_Temperature_Variance": { - "default": 2, - "depends-on": { - "Climate_Model": "CLIMATE_CONSTANT,CLIMATE_BY_DATA", - "Enable_Climate_Stochasticity": 1, - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The standard deviation (in degrees Celsius) for normally distributed noise applied to the daily land temperature values.", - "max": 7, - "min": 0, - "type": "float" - }, - "Rainfall_Filename": { - "default": "", - "depends-on": { - "Climate_Model": "CLIMATE_BY_DATA", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "Path of input file defining rainfall data.", - "type": "string" - }, - "Rainfall_Scale_Factor": { - "default": 1, - "depends-on": { - "Climate_Model": "CLIMATE_BY_DATA", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The scale factor used in multiplying rainfall value(s).", - "max": 10, - "min": 0.1000000015, - "type": "float" - }, - "Relative_Humidity_Filename": { - "default": "", - "depends-on": { - "Climate_Model": "CLIMATE_BY_DATA", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "Path of input file defining relative humidity data measured 2 meters above ground.", - "type": "string" - }, - "Relative_Humidity_Scale_Factor": { - "default": 1, - "depends-on": { - "Climate_Model": "CLIMATE_BY_DATA", - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The scale factor used in multiplying relative humidity values.", - "max": 10, - "min": 0.1000000015, - "type": "float" - }, - "Relative_Humidity_Variance": { - "default": 0.05000000075, - "depends-on": { - "Climate_Model": "CLIMATE_CONSTANT,CLIMATE_BY_DATA", - "Enable_Climate_Stochasticity": 1, - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,POLIO_SIM,AIRBORNE_SIM" - }, - "description": "The standard deviation (in percentage) for normally distributed noise applied to the daily relative humidity values when Climate_Model is configured as CLIMATE_CONSTANT or CLIMATE_BY_DATA.", - "max": 0.1199999973, - "min": 0, - "type": "float" - } - }, - "GENERIC_SIM": {}, - "Individual": { - "Enable_Aging": { - "default": 1, - "depends-on": { - "Enable_Vital_Dynamics": 1 - }, - "description": "Controls whether or not individuals in a population age during the simulation.", - "type": "bool" - }, - "Enable_Immunity": { - "default": 1, - "depends-on": { - "Simulation_Type": "GENERIC_SIM,VECTOR_SIM,STI_SIM,ENVIRONMENTAL_SIM,TBHIV_SIM,PY_SIM" - }, - "description": "Controls whether or not an individual has protective immunity after an infection clears.", - "type": "bool" - }, - "Enable_Skipping": { - "default": 0, - "depends-on": { - "Simulation_Type": "GENERIC_SIM,TYPHOID_SIM,TBHIV_SIM" - }, - "description": "Controls whether or not the simulation uses an optimization that can increase performance by up to 50% in some cases by probablistically exposing individuals rather than exposing every single person. Useful in low-prevalence, high-population scenarios", - "type": "bool" - }, - "Enable_Superinfection": { - "default": 0, - "depends-on": { - "Simulation_Type": "VECTOR_SIM,STI_SIM,ENVIRONMENTAL_SIM,MALARIA_SIM" - }, - "description": "Controls whether or not an individual can have multiple infections simultaneously.", - "type": "bool" - }, - "Infection_Updates_Per_Timestep": { - "default": 1, - "description": "Number of infection updates executed during each timestep. A timestep defaults to one day.", - "max": 144, - "min": 0, - "type": "integer" - }, - "Max_Individual_Infections": { - "default": 1, - "depends-on": { - "Enable_Superinfection": 1 - }, - "description": "Limit on the number of infections that an individual can have simultaneously.", - "max": 1000, - "min": 0, - "type": "integer" - } - }, - "Infection": { - "Base_Mortality": { - "default": 0.001000000047, - "depends-on": { - "Enable_Disease_Mortality": 1 - }, - "description": "The base mortality of the infection before accounting for individual immune modification factors. Depending on the setting of Mortality_Time_Course, this is either the daily probability of the disease being fatal (DAILY_MORTALITY) or the probability of death at the end of the infection duration (MORTALITY_AFTER_INFECTIOUS).", - "max": 1000, - "min": 0, - "type": "float" - }, - "Enable_Disease_Mortality": { - "default": 1, - "depends-on": { - "Simulation_Type": "GENERIC_SIM,VECTOR_SIM,STI_SIM,ENVIRONMENTAL_SIM,MALARIA_SIM,TBHIV_SIM,TYPHOID_SIM,PY_SIM,HIV_SIM" - }, - "description": "Controls whether or not individuals are removed from the simulation due to disease deaths.", - "type": "bool" - } - }, - "LoggingConfig": { - "Enable_Continuous_Log_Flushing": { - "default": 0, - "description": "Indicates if output and error streams should be flushed after every logging message.", - "type": "bool" - }, - "Enable_Log_Throttling": { - "default": 0, - "description": "Indicates if identical sequential logging messages should be skipped.", - "type": "bool" - }, - "Enable_Warnings_Are_Fatal": { - "default": 0, - "description": "Indicates if warning messages should generate exceptions and halt execution.", - "type": "bool" - }, - "logLevel_BaseChannelReport": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_BaseEventReport": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_BaseEventReportIntervalOutput": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_BaseTextReport": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_BaseTextReportEvents": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_BinnedReport": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_BroadcastCoordinatorEvent": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_BroadcastEvent": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_BroadcastEventToOtherNodes": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_BroadcastNodeEvent": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_BroadcasterImpl": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_CalendarEventCoordinator": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_CampaignEvent": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ChangeIPMatrix": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ChannelData": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_CommunityHealthWorkerEventCoordinator": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Configuration": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Controller": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_CoverageByNodeEventCoordinator": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_DelayEventCoordinator": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_DelayedIntervention": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_DemographicRestrictions": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_DemographicsReport": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_DistributionFactory": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_DllLoader": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_DurationDistributionImpl": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Environment": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_EnvironmentalDiagnostic": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Eradication": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_EventCoordinator": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_GenericDrug": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_GroupEventCoordinator": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_IMigrationInfo": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_IVCalendar": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ImmunityBloodTest": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ImportPressure": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_IncidenceCounterSurveillance": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_IncidenceEventCoordinator": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Individual": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Infection": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Instrumentation": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_InterpolatedValueMap": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_InterventionFactory": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Interventions": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_InterventionsContainer": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_JsonConfigurable": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_JsonObjectDemog": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_LoadBalanceScheme": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Log": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_MathFunctions": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Memory": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_MigrateFamily": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_MigrateIndividuals": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Migration": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_MpiDataExchanger": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_MultiInterventionDistributor": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_MultiNodeInterventionDistributor": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NChooserEventCoordinator": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NLHTIVNode": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Node": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NodeBirthRateMult": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NodeDemographics": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NodeEventContext": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NodeInfectivityMult": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NodeLevelHealthTriggeredIV": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NodeLevelHealthTriggeredIVScaleUpSwitch": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NodePropertyValueChanger": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NodeRandomNumber": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NodeRankMap": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NodeSetAll": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NodeSetFactory": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_NodeSetNodeList": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Outbreak": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_OutbreakIndividual": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ProgVersion": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Properties": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_PropertiesAbstract": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_PropertyReport": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_PropertyRestrictions": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_PropertyValueChanger": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_PythonSupport": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_RandomNumberGeneratorFactory": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Report": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ReportEventRecorder": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ReportEventRecorderCoordinator": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ReportEventRecorderNode": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ReportFactory": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ReportHumanMigrationTracking": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ReportNodeDemographics": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ReportStatsByIP": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ReportStrainTracking": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ReportSurveillanceEventRecorder": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_ReportUtilities": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_SQLReporter": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Schema": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_SerializationParameters": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_SerializedPopulation": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_SimpleDiagnostic": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_SimpleHealthSeekingBehavior": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Simulation": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_SimulationConfig": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_SimulationEventContext": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_SimulationFactory": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_SpatialReport": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_StandardEventCoordinator": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_StrainAwareTransmissionGroups": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_StrainIdentity": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_SurveillanceEventCoordinator": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Susceptibility": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_TBDTP": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_TBHIVDTP": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_TransmissionGroupsBase": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_TravelRestriction": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_TriggeredEventCoordinator": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_Vaccine": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_WaningEffect": { - "default": "INFO", - "description": "Logging level to be used for indicated module.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - }, - "logLevel_default": { - "default": "INFO", - "description": "Default logging level for all modules unless otherwise specified.", - "type": "Constrained String", - "value_source": "ERROR,WARNING,INFO,DEBUG,VALID" - } - }, - "MemoryGauge": { - "Memory_Usage_Halting_Threshold_Working_Set_MB": { - "default": 8000, - "description": "The maximum size of working set memory before the system throws an exception and halts.", - "max": 1000000, - "min": 0, - "type": "integer" - }, - "Memory_Usage_Warning_Threshold_Working_Set_MB": { - "default": 7000, - "description": "The maximum size of working set memory before memory usage statistics are written to the log regardless of log level.", - "max": 1000000, - "min": 0, - "type": "integer" - } - }, - "MigrationConfig": { - "Air_Migration_Filename": { - "default": "", - "depends-on": { - "Enable_Air_Migration": 1, - "Enable_Demographics_Builtin": 0, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "The path to the input data file defining patterns of migration by airplane.", - "type": "string" - }, - "Air_Migration_Roundtrip_Duration": { - "default": 1, - "depends-on": { - "Enable_Air_Migration": 1, - "Enable_Demographics_Builtin": 0, - "Migration_Model": "FIXED_RATE_MIGRATION", - "Migration_Pattern": "SINGLE_ROUND_TRIPS" - }, - "description": "The average time spent at the destination node during a round-trip migration by airplane.", - "max": 10000, - "min": 0, - "type": "float" - }, - "Air_Migration_Roundtrip_Probability": { - "default": 0.8000000119, - "depends-on": { - "Enable_Air_Migration": 1, - "Enable_Demographics_Builtin": 0, - "Migration_Model": "FIXED_RATE_MIGRATION", - "Migration_Pattern": "SINGLE_ROUND_TRIPS" - }, - "description": "The likelihood that an individual who flies to another node will return to the node of origin during the next migration.", - "max": 1, - "min": 0, - "type": "float" - }, - "Enable_Air_Migration": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Controls whether or not migration by air travel will occur.", - "type": "bool" - }, - "Enable_Family_Migration": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Controls whether or not all members of a household can migrate together when an MigrateFamily event occurs. All residents must be home before they can leave on the trip.", - "type": "bool" - }, - "Enable_Local_Migration": { - "default": 0, - "depends-on": { - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Controls whether or not local migration (the diffusion of people in and out of nearby nodes by foot travel) occurs.", - "type": "bool" - }, - "Enable_Regional_Migration": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Controls whether or not there is migration by road or rail network into and out of nodes in the simulation.", - "type": "bool" - }, - "Enable_Sea_Migration": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Controls whether or not there is migration on ships into and out of coastal cities with seaports.", - "type": "bool" - }, - "Enable_Vector_Migration": { - "default": 0, - "depends-on": { - "Simulation_Type": "VECTOR_SIM,DENGUE_SIM,MALARIA_SIM" - }, - "description": "Controls whether or not vectors can migrate. Vector_Sampling_Type must be set to TRACK_ALL_VECTORS or SAMPLE_IND_VECTORS.", - "type": "bool" - }, - "Enable_Vector_Migration_Local": { - "default": 0, - "depends-on": { - "Enable_Vector_Migration": 1, - "Simulation_Type": "VECTOR_SIM,DENGUE_SIM,MALARIA_SIM" - }, - "description": "Controls whether or not vectors may migrate to adjacent nodes.", - "type": "bool" - }, - "Enable_Vector_Migration_Regional": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Vector_Migration": 1, - "Simulation_Type": "VECTOR_SIM,DENGUE_SIM,MALARIA_SIM" - }, - "description": "Controls whether or not vectors can migration to non-adjacent nodes.", - "type": "bool" - }, - "Family_Migration_Filename": { - "default": "", - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Family_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "The name of the binary file to use to configure family migration.", - "type": "string" - }, - "Family_Migration_Roundtrip_Duration": { - "default": 1, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Family_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION", - "Migration_Pattern": "SINGLE_ROUND_TRIPS" - }, - "description": "The number of days to complete the trip and return to the original node.", - "max": 10000, - "min": 0, - "type": "float" - }, - "Local_Migration_Filename": { - "default": "", - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Local_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Path of input file defining patterns of migration to adjacent nodes by foot travel.", - "type": "string" - }, - "Local_Migration_Roundtrip_Duration": { - "default": 1, - "depends-on": { - "Enable_Local_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION", - "Migration_Pattern": "SINGLE_ROUND_TRIPS" - }, - "description": "The average time spent at the destination node during a round-trip migration by foot travel.", - "max": 10000, - "min": 0, - "type": "float" - }, - "Local_Migration_Roundtrip_Probability": { - "default": 0.9499999881, - "depends-on": { - "Enable_Local_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION", - "Migration_Pattern": "SINGLE_ROUND_TRIPS" - }, - "description": "Likelihood that an individual who walks into a neighboring node will return to the node of origin during the next migration.", - "max": 1, - "min": 0, - "type": "float" - }, - "Migration_Model": { - "default": "NO_MIGRATION", - "description": "Model to use for migration. Note: VARIABLE_RATE_MIGRATION and LEVY FLIGHTS are currently not supported.", - "enum": [ - "NO_MIGRATION", - "FIXED_RATE_MIGRATION" - ], - "type": "enum" - }, - "Migration_Pattern": { - "default": "RANDOM_WALK_DIFFUSION", - "depends-on": { - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "The type of migration pattern used for the trip. For example, a single roundtrip or several waypoints before retracing their steps to return home.", - "enum": [ - "RANDOM_WALK_DIFFUSION", - "SINGLE_ROUND_TRIPS", - "WAYPOINTS_HOME" - ], - "type": "enum" - }, - "Regional_Migration_Filename": { - "default": "", - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Regional_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Path of input file defining patterns of migration by vehicle via road or rail network. If the node is not on a road or rail network, regional migration focuses on the closest hub city in the network.", - "type": "string" - }, - "Regional_Migration_Roundtrip_Duration": { - "default": 1, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Regional_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION", - "Migration_Pattern": "SINGLE_ROUND_TRIPS" - }, - "description": "The average time spent at the destination node during a round-trip migration by road network.", - "max": 10000, - "min": 0, - "type": "float" - }, - "Regional_Migration_Roundtrip_Probability": { - "default": 0.1000000015, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Regional_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION", - "Migration_Pattern": "SINGLE_ROUND_TRIPS" - }, - "description": "Likelihood that an individual who travels by vehicle to another node will return to the node of origin during the next migration.", - "max": 1, - "min": 0, - "type": "float" - }, - "Roundtrip_Waypoints": { - "default": 10, - "depends-on": { - "Migration_Model": "FIXED_RATE_MIGRATION", - "Migration_Pattern": "WAYPOINTS_HOME" - }, - "description": "The maximum number of points reached during a trip before steps are retraced on the return trip home.", - "max": 1000, - "min": 0, - "type": "integer" - }, - "Sea_Migration_Filename": { - "default": "", - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Sea_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Path of input file defining patterns of migration by ship.", - "type": "string" - }, - "Sea_Migration_Roundtrip_Duration": { - "default": 1, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Sea_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION", - "Migration_Pattern": "SINGLE_ROUND_TRIPS" - }, - "description": "The average time spent at the destination node during a round-trip migration by ship.", - "max": 10000, - "min": 0, - "type": "float" - }, - "Sea_Migration_Roundtrip_Probability": { - "default": 0.25, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Sea_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION", - "Migration_Pattern": "SINGLE_ROUND_TRIPS" - }, - "description": "Likelihood that an individual who travels by ship into a neighboring node will return to the node of origin during the next migration. Used only when Enable_Sea_Migration is set to 1.", - "max": 1, - "min": 0, - "type": "float" - }, - "Vector_Migration_Filename_Local": { - "default": "", - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Vector_Migration": 1, - "Enable_Vector_Migration_Local": 1, - "Simulation_Type": "VECTOR_SIM,DENGUE_SIM,MALARIA_SIM" - }, - "description": "Path to the vector migration file defining patterns of vector migration to adjacent nodes.", - "type": "string" - }, - "Vector_Migration_Filename_Regional": { - "default": "", - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Vector_Migration": 1, - "Enable_Vector_Migration_Regional": 1, - "Simulation_Type": "VECTOR_SIM,DENGUE_SIM,MALARIA_SIM" - }, - "description": "Path to the vector migration file defining patterns of vector migration to non-adjacent nodes.", - "type": "string" - }, - "Vector_Migration_Food_Modifier": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Vector_Migration": 1, - "Simulation_Type": "VECTOR_SIM,DENGUE_SIM,MALARIA_SIM" - }, - "description": "Preference of a vector to migrate toward a node currently occupied by humans, independent of the number of humans in the node. Only relevant when Vector_Sampling_Type is set to TRACK_ALL_VECTORS.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Vector_Migration_Habitat_Modifier": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Vector_Migration": 1, - "Simulation_Type": "VECTOR_SIM,DENGUE_SIM,MALARIA_SIM" - }, - "description": "Preference of a vector to migrate toward a node with more habitat. Only relevant when Vector_Sampling_Type is set to TRACK_ALL_VECTORS.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Vector_Migration_Modifier_Equation": { - "default": "NOT_DEFINED", - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Vector_Migration": 1, - "Simulation_Type": "VECTOR_SIM,DENGUE_SIM,MALARIA_SIM" - }, - "description": "Functional form of vector migration modifiers.", - "enum": [ - "NOT_DEFINED", - "LINEAR", - "EXPONENTIAL" - ], - "type": "enum" - }, - "Vector_Migration_Stay_Put_Modifier": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Vector_Migration": 1, - "Simulation_Type": "VECTOR_SIM,DENGUE_SIM,MALARIA_SIM" - }, - "description": "Preference of a vector to remain in its current node rather than migrate to another node. Only relevant when Vector_Sampling_Type is set to TRACK_ALL_VECTORS.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "x_Air_Migration": { - "default": 1, - "depends-on": { - "Enable_Air_Migration": 1, - "Enable_Demographics_Builtin": 0, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Scale factor for the rate of migration by air.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "x_Family_Migration": { - "default": 1, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Family_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Scale factor for the rate of migration by families.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "x_Local_Migration": { - "default": 1, - "depends-on": { - "Enable_Local_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Scale factor for the rate of migration by foot travel.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "x_Regional_Migration": { - "default": 1, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Regional_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Scale factor for the rate of migration by road vehicle.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "x_Sea_Migration": { - "default": 1, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Sea_Migration": 1, - "Migration_Model": "FIXED_RATE_MIGRATION" - }, - "description": "Scale factor for the rate of migration by sea.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "x_Vector_Migration_Local": { - "default": 1, - "depends-on": { - "Enable_Vector_Migration": 1, - "Enable_Vector_Migration_Local": 1, - "Simulation_Type": "VECTOR_SIM,DENGUE_SIM,MALARIA_SIM" - }, - "description": "Scale factor for the rate of vector migration to adjacent nodes.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "x_Vector_Migration_Regional": { - "default": 1, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Vector_Migration": 1, - "Enable_Vector_Migration_Regional": 1, - "Simulation_Type": "VECTOR_SIM,DENGUE_SIM,MALARIA_SIM" - }, - "description": "Scale factor for the rate of vector migration to non-adjacent nodes.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - } - }, - "NodeConfig": { - "Age_Initialization_Distribution_Type": { - "default": "DISTRIBUTION_OFF", - "description": "The method for initializing the age distribution in the simulated population.", - "enum": [ - "DISTRIBUTION_OFF", - "DISTRIBUTION_SIMPLE", - "DISTRIBUTION_COMPLEX" - ], - "type": "enum" - }, - "Base_Individual_Sample_Rate": { - "default": 1, - "depends-on": { - "Individual_Sampling_Type": "FIXED_SAMPLING,ADAPTED_SAMPLING_BY_IMMUNE_STATE" - }, - "description": "The base rate of sampling for individuals, equal to the fraction of individuals in each node being sampled.", - "max": 1, - "min": 9.999999747e-06, - "type": "float" - }, - "Birth_Rate_Dependence": { - "default": "FIXED_BIRTH_RATE", - "depends-on": { - "Enable_Birth": 1, - "Enable_Vital_Dynamics": 1 - }, - "description": "The method used to modify the value set in BirthRate in the demographics file.", - "enum": [ - "FIXED_BIRTH_RATE", - "POPULATION_DEP_RATE", - "DEMOGRAPHIC_DEP_RATE", - "INDIVIDUAL_PREGNANCIES", - "INDIVIDUAL_PREGNANCIES_BY_AGE_AND_YEAR" - ], - "type": "enum" - }, - "Death_Rate_Dependence": { - "default": "NONDISEASE_MORTALITY_BY_AGE_AND_GENDER", - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Natural_Mortality": 1, - "Enable_Vital_Dynamics": 1 - }, - "description": "Determines how likely individuals are to die from natural, non-disease causes.", - "enum": [ - "NONDISEASE_MORTALITY_BY_AGE_AND_GENDER", - "NONDISEASE_MORTALITY_BY_YEAR_AND_AGE_FOR_EACH_GENDER" - ], - "type": "enum" - }, - "Enable_Acquisition_Heterogeneity": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Indicates that each agent is assigned an acquisition probability multiplier drawn from a log normal distribution with mean value of 1. Note that mean != mu for a log normal distribution.", - "type": "bool" - }, - "Enable_Birth": { - "default": 1, - "depends-on": { - "Enable_Vital_Dynamics": 1 - }, - "description": "Controls whether or not individuals will be added to the simulation by birth.", - "type": "bool" - }, - "Enable_Demographics_Risk": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,TBHIV_SIM,DENGUE_SIM" - }, - "description": "Controls whether or not the simulation includes the impact of disease risk in demographics.", - "type": "bool" - }, - "Enable_Environmental_Route": { - "default": 0, - "depends-on": { - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,TYPHOID_SIM" - }, - "description": "Indicates if a transmission group for environmental contagion should be used.", - "type": "bool" - }, - "Enable_Heterogeneous_Intranode_Transmission": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Simulation_Type": "GENERIC_SIM,STI_SIM,HIV_SIM,AIRBORNE_SIM,TBHIV_SIM,PY_SIM,ENVIRONMENTAL_SIM,TYPHOID_SIM,POLIO_SIM" - }, - "description": "Controls whether or not individuals experience heterogeneous disease transmission within a node.", - "type": "bool" - }, - "Enable_Infection_Rate_Overdispersion": { - "default": 0, - "depends-on": { - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM" - }, - "description": "Controls overdispersion of the infection process. Implemented as gamma-Poisson mixture; zero value for overdispersion implies Poisson statistics.", - "type": "bool" - }, - "Enable_Infectivity_Reservoir": { - "default": 0, - "description": "Controls whether or not an exogeneous reservoir of infectivity will be included in the simulation and allows for the infectivity in a node to be increased additively.", - "type": "bool" - }, - "Enable_Infectivity_Scaling": { - "default": 0, - "depends-on": { - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM" - }, - "description": "Indicates if total node infectivity should multiplied by a scaling factor.", - "type": "bool" - }, - "Enable_Initial_Prevalence": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Simulation_Type": "GENERIC_SIM,VECTOR_SIM,STI_SIM,ENVIRONMENTAL_SIM,MALARIA_SIM" - }, - "description": "Indicates that the InitialPrevalance value from demographics is the fraction of individuals to be infected at simulation initialization; zero initial prevalence otherwise.", - "type": "bool" - }, - "Enable_Initial_Susceptibility_Distribution": { - "default": 0, - "depends-on": { - "Enable_Immunity": 1, - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,TYPHOID_SIM,STI_SIM,AIRBORNE_SIM,TBHIV_SIM,VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,PY_SIM" - }, - "description": "Controls whether or not individuals in the population have immunity at the beginning of the simulation. If set to 0, individuals are not initialized with immunity but may acquire immunity. If set to 1, you must indicate the type of distribution to use for immunity in the configuration parameter Immunity_Initialization_Distribution_Type and the distribution values in the demographics file.", - "type": "bool" - }, - "Enable_Maternal_Infection_Transmission": { - "default": 0, - "depends-on": { - "Enable_Birth": 1, - "Enable_Vital_Dynamics": 1, - "Simulation_Type": "STI_SIM,HIV_SIM,AIRBORNE_SIM,TBHIV_SIM,VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,PY_SIM" - }, - "description": "Controls whether or not infectious mothers infect infants at birth.", - "type": "bool" - }, - "Enable_Natural_Mortality": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Vital_Dynamics": 1 - }, - "description": "Controls whether or not individuals are removed from the simulation due to natural (non-disease) deaths.", - "type": "bool" - }, - "Enable_Percentage_Children": { - "default": 0, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM" - }, - "description": "Indicates that the age initialization distribution is resampled to ensure a node populated with the exact fraction of children specified. Typically relevant only when nodes have small numbers of agents.", - "type": "bool" - }, - "Enable_Susceptibility_Scaling": { - "default": 0, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Controls whether or not susceptibility is scaled by time as defined by Susceptibility_Scaling_Type.", - "type": "bool" - }, - "Enable_Vector_Mortality": { - "default": 1, - "depends-on": { - "Simulation_Type": "VECTOR_SIM,MALARIA_SIM,DENGUE_SIM" - }, - "description": "Controls whether or not vectors can die. Vector_Sampling_Type must be set to TRACK_ALL_VECTORS.", - "type": "bool" - }, - "Enable_Vital_Dynamics": { - "default": 1, - "description": "Controls whether or not births and deaths occur in the simulation.", - "type": "bool" - }, - "Immune_Downsample_Min_Age": { - "default": 0, - "depends-on": { - "Individual_Sampling_Type": "ADAPTED_SAMPLING_BY_IMMUNE_STATE" - }, - "description": "Minimum agent age required for immunity dependent downsampling.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Immune_Threshold_For_Downsampling": { - "default": 0, - "depends-on": { - "Individual_Sampling_Type": "ADAPTED_SAMPLING_BY_IMMUNE_STATE" - }, - "description": "The threshold on acquisition immunity at which to apply immunity-dependent downsampling; individuals who are more immune than this threshold are downsampled.", - "max": 1, - "min": 0, - "type": "float" - }, - "Individual_Sampling_Type": { - "default": "TRACK_ALL", - "description": "The type of individual human sampling to use, which can be used to down sample large populations, certain age groups, or the immune population that does not contribute to transmission.", - "enum": [ - "TRACK_ALL", - "FIXED_SAMPLING", - "ADAPTED_SAMPLING_BY_POPULATION_SIZE", - "ADAPTED_SAMPLING_BY_AGE_GROUP", - "ADAPTED_SAMPLING_BY_AGE_GROUP_AND_POP_SIZE", - "ADAPTED_SAMPLING_BY_IMMUNE_STATE" - ], - "type": "enum" - }, - "Log2_Number_of_Genomes_per_Clade": { - "default": 0, - "depends-on": { - "Enable_Strain_Tracking": 1, - "Simulation_Type": "GENERIC_SIM,VECTOR_SIM,STI_SIM,HIV_SIM,AIRBORNE_SIM,PY_SIM,DENGUE_SIM" - }, - "description": "The maximum number of genome combinations per clades.", - "max": 24, - "min": 0, - "type": "integer" - }, - "Maternal_Infection_Transmission_Probability": { - "default": 0, - "depends-on": { - "Enable_Birth": 1, - "Enable_Maternal_Infection_Transmission": 1, - "Enable_Vital_Dynamics": 1, - "Simulation_Type": "STI_SIM,HIV_SIM,AIRBORNE_SIM,TBHIV_SIM,VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,PY_SIM" - }, - "description": "Probability of transmission of infection from mother to infant at birth. Note: For malaria and vector simulations, set this to 0.", - "max": 1, - "min": 0, - "type": "float" - }, - "Max_Node_Population_Samples": { - "default": 30, - "depends-on": { - "Individual_Sampling_Type": "ADAPTED_SAMPLING_BY_POPULATION_SIZE,ADAPTED_SAMPLING_BY_AGE_GROUP_AND_POP_SIZE" - }, - "description": "The maximum number of individuals to track in a node. When the population exceeds this number, the sampling rate will drop according to the value set in Individual_Sampling_Type.", - "max": 3.402823466e+38, - "min": 1, - "type": "float" - }, - "Min_Node_Population_Samples": { - "default": 0, - "depends-on": { - "Individual_Sampling_Type": "FIXED_SAMPLING,ADAPTED_SAMPLING_BY_IMMUNE_STATE" - }, - "description": "Minimum number of agents to track in a node. The sampling rate will be modified to avoid down-sampling populations below this number.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Node_Contagion_Decay_Rate": { - "default": 1, - "depends-on": { - "Enable_Environmental_Route": 1, - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,TYPHOID_SIM" - }, - "description": "The fraction of contagion not carried over to the next time step.", - "max": 1, - "min": 0, - "type": "float" - }, - "Number_of_Clades": { - "default": 1, - "depends-on": { - "Enable_Strain_Tracking": 1, - "Simulation_Type": "GENERIC_SIM,VECTOR_SIM,STI_SIM,HIV_SIM,AIRBORNE_SIM,PY_SIM,TBHIV_SIM,MALARIA_SIM,ENVIRONMENTAL_SIM,TYPHOID_SIM" - }, - "description": "The maximum number of distinct clades in the simulation.", - "max": 10, - "min": 1, - "type": "integer" - }, - "Relative_Sample_Rate_Immune": { - "default": 0.1000000015, - "depends-on": { - "Individual_Sampling_Type": "ADAPTED_SAMPLING_BY_IMMUNE_STATE" - }, - "description": "Relative sampling rate for people who have acquired immunity through recovery or vaccination. If set to 1, this will have no effect, even if the individual's immunity modifier is below threshold.", - "max": 1, - "min": 0.001000000047, - "type": "float" - }, - "Sample_Rate_0_18mo": { - "default": 1, - "depends-on": { - "Individual_Sampling_Type": "ADAPTED_SAMPLING_BY_AGE_GROUP,ADAPTED_SAMPLING_BY_AGE_GROUP_AND_POP_SIZE" - }, - "description": "For age-adapted sampling, the relative sampling rate for infants age 0 to 18 months.", - "max": 1, - "min": 0.001000000047, - "type": "float" - }, - "Sample_Rate_10_14": { - "default": 1, - "depends-on": { - "Individual_Sampling_Type": "ADAPTED_SAMPLING_BY_AGE_GROUP,ADAPTED_SAMPLING_BY_AGE_GROUP_AND_POP_SIZE" - }, - "description": "For age-adapted sampling, the relative sampling rate for children age 10 to 14 years.", - "max": 1, - "min": 0.001000000047, - "type": "float" - }, - "Sample_Rate_15_19": { - "default": 1, - "depends-on": { - "Individual_Sampling_Type": "ADAPTED_SAMPLING_BY_AGE_GROUP,ADAPTED_SAMPLING_BY_AGE_GROUP_AND_POP_SIZE" - }, - "description": "For age-adapted sampling, the relative sampling rate for adolescents age 15 to 19 years.", - "max": 1, - "min": 0.001000000047, - "type": "float" - }, - "Sample_Rate_18mo_4yr": { - "default": 1, - "depends-on": { - "Individual_Sampling_Type": "ADAPTED_SAMPLING_BY_AGE_GROUP,ADAPTED_SAMPLING_BY_AGE_GROUP_AND_POP_SIZE" - }, - "description": "For age-adapted sampling, the relative sampling rate for children age 18 months to 4 years.", - "max": 1, - "min": 0.001000000047, - "type": "float" - }, - "Sample_Rate_20_Plus": { - "default": 1, - "depends-on": { - "Individual_Sampling_Type": "ADAPTED_SAMPLING_BY_AGE_GROUP,ADAPTED_SAMPLING_BY_AGE_GROUP_AND_POP_SIZE" - }, - "description": "For age-adapted sampling, the relative sampling rate for adults age 20 and older.", - "max": 1, - "min": 0.001000000047, - "type": "float" - }, - "Sample_Rate_5_9": { - "default": 1, - "depends-on": { - "Individual_Sampling_Type": "ADAPTED_SAMPLING_BY_AGE_GROUP,ADAPTED_SAMPLING_BY_AGE_GROUP_AND_POP_SIZE" - }, - "description": "For age-adapted sampling, the relative sampling rate for children age 5 to 9 years.", - "max": 1, - "min": 0.001000000047, - "type": "float" - }, - "Sample_Rate_Birth": { - "default": 1, - "depends-on": { - "Individual_Sampling_Type": "ADAPTED_SAMPLING_BY_AGE_GROUP,ADAPTED_SAMPLING_BY_AGE_GROUP_AND_POP_SIZE" - }, - "description": "For age-adapted sampling, the relative sampling rate for births.", - "max": 1, - "min": 0.001000000047, - "type": "float" - }, - "Susceptibility_Initialization_Distribution_Type": { - "default": "DISTRIBUTION_OFF", - "depends-on": { - "Enable_Immunity": 1, - "Enable_Initial_Susceptibility_Distribution": 1, - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,TYPHOID_SIM,STI_SIM,AIRBORNE_SIM,TBHIV_SIM,VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,PY_SIM" - }, - "description": "The method for initializing the susceptibility distribution in the simulated population.", - "enum": [ - "DISTRIBUTION_OFF", - "DISTRIBUTION_SIMPLE", - "DISTRIBUTION_COMPLEX" - ], - "type": "enum" - }, - "Susceptibility_Scaling_Rate": { - "default": 0, - "depends-on": { - "Enable_Susceptibility_Scaling": 1, - "Simulation_Type": "POLIO_SIM" - }, - "description": "The scaling rate for the variation in time of the log-linear susceptibility scaling.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "x_Base_Population": { - "default": 1, - "description": "Scale facor for InitialPopulation in the demographics file.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "x_Birth": { - "default": 1, - "depends-on": { - "Enable_Birth": 1, - "Enable_Vital_Dynamics": 1 - }, - "description": "Scale factor for birth rate.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "x_Other_Mortality": { - "default": 1, - "depends-on": { - "Enable_Demographics_Builtin": 0, - "Enable_Natural_Mortality": 1, - "Enable_Vital_Dynamics": 1 - }, - "description": "Scale factor for mortality from causes other than the disease being simulated.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - } - }, - "NodeDemographics": { - "Default_Geography_Initial_Node_Population": { - "default": 1000, - "depends-on": { - "Enable_Demographics_Builtin": 1 - }, - "description": "When using the built-in demographics for default geography, the initial number of individuals in each node.", - "max": 1000000, - "min": 0, - "type": "integer" - }, - "Default_Geography_Torus_Size": { - "default": 10, - "depends-on": { - "Enable_Demographics_Builtin": 1 - }, - "description": "When using the built-in demographics for default geography, the square root of the number of nodes in the simulation. For migration, the nodes are assumed to be a torus.", - "max": 100, - "min": 3, - "type": "integer" - }, - "Demographics_Filenames": { - "default": [], - "depends-on": { - "Enable_Demographics_Builtin": 0 - }, - "description": "An array of the paths to demographics files containing information on the identity and demographics of the region to simulate.", - "type": "Vector String" - }, - "Enable_Demographics_Builtin": { - "default": 1, - "description": "Controls whether or not built-in demographics for default geography will be used. Note that the built-in demographics feature does not represent a real geographical location and is mostly used for testing.", - "type": "bool" - } - }, - "PolioConfig": { - "Boost_Log2_NAb_IPV1": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Increase in log2 neutralizing antibody titer in response to IPV1 antigen.", - "max": 10, - "min": 0, - "type": "float" - }, - "Boost_Log2_NAb_IPV2": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Increase in log2 neutralizing antibody titer in response to IPV2 antigen.", - "max": 10, - "min": 0, - "type": "float" - }, - "Boost_Log2_NAb_IPV3": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Increase in log2 neutralizing antibody titer in response to IPV3 antigen.", - "max": 10, - "min": 0, - "type": "float" - }, - "Boost_Log2_NAb_OPV1": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Increase in log2 neutralizing antibody titer in response to Sabin1 infection.", - "max": 10, - "min": 0, - "type": "float" - }, - "Boost_Log2_NAb_OPV2": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Increase in log2 neutralizing antibody titer in response to Sabin2 infection.", - "max": 10, - "min": 0, - "type": "float" - }, - "Boost_Log2_NAb_OPV3": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Increase in log2 neutralizing antibody titer in response to Sabin3 infection.", - "max": 10, - "min": 0, - "type": "float" - }, - "Boost_Log2_NAb_Stddev_IPV1": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Standard deviation in log2 antibody boost for IPV1 antigen.", - "max": 1, - "min": 0, - "type": "float" - }, - "Boost_Log2_NAb_Stddev_IPV2": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Standard deviation in log2 antibody boost for IPV2 antigen.", - "max": 1, - "min": 0, - "type": "float" - }, - "Boost_Log2_NAb_Stddev_IPV3": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Standard deviation in log2 antibody boost for IPV3 antigen.", - "max": 1, - "min": 0, - "type": "float" - }, - "Boost_Log2_NAb_Stddev_OPV1": { - "default": 1.5, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Standard deviation in log2 antibody boost for Sabin1 infection.", - "max": 10, - "min": 0, - "type": "float" - }, - "Boost_Log2_NAb_Stddev_OPV2": { - "default": 1.5, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Standard deviation in log2 antibody boost for Sabin2 infection.", - "max": 10, - "min": 0, - "type": "float" - }, - "Boost_Log2_NAb_Stddev_OPV3": { - "default": 1.5, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Standard deviation in log2 antibody boost for Sabin3 infection.", - "max": 10, - "min": 0, - "type": "float" - }, - "Evolution_Polio_Clock_Type": { - "default": "POLIO_EVOCLOCK_NONE", - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Functional form of the molecular clock for evolution dynamics. Applies to vaccine-derived strains in host. Possible values are: POLIO_EVOCLOCK_NONE, POLIO_EVOCLOCK_LINEAR, POLIO_EVOCLOCK_IMMUNITY, POLIO_EVOCLOCK_REVERSION_AND_IMMUNITY, POLIO_EVOCLOCK_REVERSION", - "enum": [ - "POLIO_EVOCLOCK_NONE", - "POLIO_EVOCLOCK_LINEAR", - "POLIO_EVOCLOCK_IMMUNITY", - "POLIO_EVOCLOCK_REVERSION_AND_IMMUNITY", - "POLIO_EVOCLOCK_REVERSION", - "POLIO_EVOCLOCK_POISSONSITES" - ], - "type": "enum" - }, - "Excrement_Load": { - "default": 300, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Feces grams per day.", - "max": 1000, - "min": 0, - "type": "float" - }, - "Incubation_Disease_Mu": { - "default": 2.389300108, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Incubation period to disease, mu parameter, in polio these are interpreted as lognormal", - "max": 100, - "min": 0, - "type": "float" - }, - "Incubation_Disease_Sigma": { - "default": 0.4557999969, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Incubation period to disease, sigma parameter, in polio these are interpreted as lognormal", - "max": 100, - "min": 0, - "type": "float" - }, - "Maternal_Ab_Halflife": { - "default": 22, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "half life in days for maternal neutralizing antibodies", - "max": 1000, - "min": 0, - "type": "float" - }, - "Maternal_log2NAb_mean": { - "default": 6, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "mean of log2 neutralizing antibodies in mothers", - "max": 18, - "min": 0, - "type": "float" - }, - "Maternal_log2NAb_std": { - "default": 3, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "std deviation of log2 neutralizing antibodies in mothers", - "max": 18, - "min": 0, - "type": "float" - }, - "Max_Log2_NAb_IPV1": { - "default": 4, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Multiplicative factor on the natural log of neutralizing antibody titer in response to live poliovirus challenge for IPV1.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Max_Log2_NAb_IPV2": { - "default": 4, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Multiplicative factor on the natural log of neutralizing antibody titer in response to live poliovirus challenge for IPV2.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Max_Log2_NAb_IPV3": { - "default": 4, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Multiplicative factor on the natural log of neutralizing antibody titer in response to live poliovirus challenge for IPV3.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Max_Log2_NAb_OPV1": { - "default": 2, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Multiplicative factor on the natural log of neutralizing antibody titer in response to live poliovirus challenge for OPV1.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Max_Log2_NAb_OPV2": { - "default": 2, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Multiplicative factor on the natural log of neutralizing antibody titer in response to live poliovirus challenge for OPV2.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Max_Log2_NAb_OPV3": { - "default": 2, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Multiplicative factor on the natural log of neutralizing antibody titer in response to live poliovirus challenge for OPV3.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Max_Rand_Standard_Deviations": { - "default": 2, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Limit to extents of a random normal as number of standard deviations.", - "max": 10, - "min": 0, - "type": "float" - }, - "Mucosal_Immunogenicity_IPV": { - "default": 3, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "The mucosal immunogenicity of IPV relative to OPV.", - "max": 100, - "min": 0, - "type": "float" - }, - "Mucosal_Immunogenicity_IPV_OPVExposed": { - "default": 3, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "The mucosal immunogenicity of IPV relative to OPV on OPV-exposed individuals.", - "max": 100, - "min": 0, - "type": "float" - }, - "Neutralization_Time_Tau": { - "default": 0.03999999911, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Virus neutralization time constant in days.", - "max": 1, - "min": 0, - "type": "float" - }, - "Paralysis_Base_Rate_Sabin1": { - "default": 0.004999999888, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Probability of paralysis (VAPP) from a Sabin1 poliovirus infection in a fully susceptible individual.", - "max": 1, - "min": 0, - "type": "float" - }, - "Paralysis_Base_Rate_Sabin2": { - "default": 0.0003300000099, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Probability of paralysis (VAPP) from a Sabin2 poliovirus infection in a fully susceptible individual.", - "max": 1, - "min": 0, - "type": "float" - }, - "Paralysis_Base_Rate_Sabin3": { - "default": 0.001000000047, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Probability of paralysis (VAPP) from a Sabin3 poliovirus infection in a fully susceptible individual.", - "max": 1, - "min": 0, - "type": "float" - }, - "Paralysis_Base_Rate_WPV1": { - "default": 0.05000000075, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Probability of paralysis from a WPV1 poliovirus infection in a fully susceptible individual.", - "max": 1, - "min": 0, - "type": "float" - }, - "Paralysis_Base_Rate_WPV2": { - "default": 0.0003300000099, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Probability of paralysis from a WPV2 poliovirus infection in a fully susceptible individual.", - "max": 1, - "min": 0, - "type": "float" - }, - "Paralysis_Base_Rate_WPV3": { - "default": 0.001000000047, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Probability of paralysis from a WPV3 poliovirus infection in a fully susceptible individual.", - "max": 1, - "min": 0, - "type": "float" - }, - "Prime_Log2_NAb_IPV1": { - "default": 4, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "First IPV1 antigen exposure log2 neutralizing antibody titer.", - "max": 10, - "min": 0, - "type": "float" - }, - "Prime_Log2_NAb_IPV2": { - "default": 4, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "First IPV2 antigen exposure log2 neutralizing antibody titer.", - "max": 10, - "min": 0, - "type": "float" - }, - "Prime_Log2_NAb_IPV3": { - "default": 4, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "First IPV3 antigen exposure log2 neutralizing antibody titer.", - "max": 10, - "min": 0, - "type": "float" - }, - "Prime_Log2_NAb_OPV1": { - "default": 2, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "First Sabin1 infection log2 neutralizing antibody titer.", - "max": 10, - "min": 0, - "type": "float" - }, - "Prime_Log2_NAb_OPV2": { - "default": 2, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "First Sabin2 infection log2 neutralizing antibody titer.", - "max": 10, - "min": 0, - "type": "float" - }, - "Prime_Log2_NAb_OPV3": { - "default": 2, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "First Sabin3 infection log2 neutralizing antibody titer.", - "max": 10, - "min": 0, - "type": "float" - }, - "Prime_Log2_NAb_Stddev_IPV1": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Standard deviation in IPV1 log2 priming titer.", - "max": 10, - "min": 0, - "type": "float" - }, - "Prime_Log2_NAb_Stddev_IPV2": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Standard deviation in IPV2 log2 priming titer.", - "max": 10, - "min": 0, - "type": "float" - }, - "Prime_Log2_NAb_Stddev_IPV3": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Standard deviation in IPV3 log2 priming titer.", - "max": 10, - "min": 0, - "type": "float" - }, - "Prime_Log2_NAb_Stddev_OPV1": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Standard deviation in Sabin1 log2 priming titer.", - "max": 10, - "min": 0, - "type": "float" - }, - "Prime_Log2_NAb_Stddev_OPV2": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Standard deviation in Sabin2 log2 priming titer.", - "max": 10, - "min": 0, - "type": "float" - }, - "Prime_Log2_NAb_Stddev_OPV3": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Standard deviation in Sabin3 log2 priming titer.", - "max": 10, - "min": 0, - "type": "float" - }, - "Reversion_Steps_Sabin1": { - "default": 6, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Number of attenuating sites for Sabin1.", - "max": 8, - "min": 0, - "type": "integer" - }, - "Reversion_Steps_Sabin2": { - "default": 2, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Number of attenuating sites for Sabin2.", - "max": 8, - "min": 0, - "type": "integer" - }, - "Reversion_Steps_Sabin3": { - "default": 3, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Number of attenuating sites for Sabin3.", - "max": 8, - "min": 0, - "type": "integer" - }, - "Sabin1_Site_Reversion_Rates": { - "ascending": 0, - "default": [], - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Sabin1_Site_Reversion_Rates", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "Sabin2_Site_Reversion_Rates": { - "ascending": 0, - "default": [], - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Sabin2_Site_Reversion_Rates", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "Sabin3_Site_Reversion_Rates": { - "ascending": 0, - "default": [], - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Sabin3_Site_Reversion_Rates", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "Shed_Fecal_Duration_Block_Log2NAb": { - "default": 15, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "mucosal log2 neutralizing antibodies to reduce fecal shedding duration to zero.", - "max": 100, - "min": 1, - "type": "float" - }, - "Shed_Fecal_MaxLn_Duration": { - "default": 4, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "fecal shedding natural log of maximum infection duration.", - "max": 100, - "min": 0, - "type": "float" - }, - "Shed_Fecal_MaxLn_Duration_Stddev": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "fecal shedding standard deviation in natural log of infection duration.", - "max": 10, - "min": 0, - "type": "float" - }, - "Shed_Fecal_MaxLog10_Peak_Titer": { - "default": 5, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "fecal shedding maximum log10 titer for the peak of shedding profile.", - "max": 10, - "min": 0, - "type": "float" - }, - "Shed_Fecal_MaxLog10_Peak_Titer_Stddev": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "fecal shedding standatd deviation in log10 titer for the peak of shedding profile.", - "max": 10, - "min": 0, - "type": "float" - }, - "Shed_Fecal_Titer_Block_Log2NAb": { - "default": 15, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "mucosal log2 neutralizing antibodies to reduce fecal shedding maximum log10 titer to zero.", - "max": 100, - "min": 1, - "type": "float" - }, - "Shed_Fecal_Titer_Profile_Mu": { - "default": 3, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "fecal shedding shape parameter for titer profile.", - "max": 10, - "min": 0, - "type": "float" - }, - "Shed_Fecal_Titer_Profile_Sigma": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "fecal sheding shape parameter for titer profile.", - "max": 10, - "min": 0, - "type": "float" - }, - "Shed_Oral_Duration_Block_Log2NAb": { - "default": 15, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "mucosal log2 neutralizing antibodies to reduce fecal shedding duration to zero.", - "max": 100, - "min": 1, - "type": "float" - }, - "Shed_Oral_MaxLn_Duration": { - "default": 4, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "fecal shedding natural log of maximum infection duration.", - "max": 10, - "min": 0, - "type": "float" - }, - "Shed_Oral_MaxLn_Duration_Stddev": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "fecal shedding standard deviation in natural log of infection duration.", - "max": 10, - "min": 0, - "type": "float" - }, - "Shed_Oral_MaxLog10_Peak_Titer": { - "default": 5, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "fecal shedding maximum log10 titer for the peak of shedding profile.", - "max": 10, - "min": 0, - "type": "float" - }, - "Shed_Oral_MaxLog10_Peak_Titer_Stddev": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "fecal shedding standatd deviation in log10 titer for the peak of shedding profile.", - "max": 10, - "min": 0, - "type": "float" - }, - "Shed_Oral_Titer_Block_Log2NAb": { - "default": 15, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "mucosal log2 neutralizing antibodies to reduce fecal shedding maximum log10 titer to zero.", - "max": 100, - "min": 1, - "type": "float" - }, - "Shed_Oral_Titer_Profile_Mu": { - "default": 3, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "fecal shedding shape parameter for titer profile.", - "max": 10, - "min": 0, - "type": "float" - }, - "Shed_Oral_Titer_Profile_Sigma": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "fecal sheding shape parameter for titer profile.", - "max": 10, - "min": 0, - "type": "float" - }, - "Specific_Infectivity_Sabin1": { - "default": 3.020000077e-05, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Specific infectivity of Sabin1.", - "max": 1000, - "min": 0, - "type": "float" - }, - "Specific_Infectivity_Sabin2": { - "default": 0.001350000035, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Specific infectivity of Sabin2.", - "max": 1000, - "min": 0, - "type": "float" - }, - "Specific_Infectivity_Sabin3": { - "default": 0.0001150000026, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Specific infectivity of Sabin3.", - "max": 1000, - "min": 0, - "type": "float" - }, - "Specific_Infectivity_WPV1": { - "default": 0.00400000019, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Specific infectivity of WPV1.", - "max": 1000, - "min": 0, - "type": "float" - }, - "Specific_Infectivity_WPV2": { - "default": 0.00400000019, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Specific infectivity of WPV2.", - "max": 1000, - "min": 0, - "type": "float" - }, - "Specific_Infectivity_WPV3": { - "default": 0.00400000019, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Specific infectivity of WPV3.", - "max": 1000, - "min": 0, - "type": "float" - }, - "Substrain_Relative_Infectivity_String_VDPV1": { - "ascending": 0, - "default": [], - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Substrain_Relative_Infectivity_String_VDPV1", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "Substrain_Relative_Infectivity_String_VDPV2": { - "ascending": 0, - "default": [], - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Substrain_Relative_Infectivity_String_VDPV2", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "Substrain_Relative_Infectivity_String_VDPV3": { - "ascending": 0, - "default": [], - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Substrain_Relative_Infectivity_String_VDPV3", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "VDPV_Virulence_Model_Type": { - "default": "POLIO_VDPV_NONVIRULENT", - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Type of virulence model for fitness gains in reversion of attenuating sites. The selected model controls the effects of evolution or reversion. Possible values are: POLIO_VDPV_NONVIRULENT, POLIO_VDPV_PARALYSIS, POLIO_VDPV_PARALYSIS_AND_LOG_INFECTIVITY, POLIO_VDPV_LOG_PARALYSIS_AND_LOG_INFECTIVITY", - "enum": [ - "POLIO_VDPV_NONVIRULENT", - "POLIO_VDPV_PARALYSIS", - "POLIO_VDPV_PARALYSIS_AND_LOG_INFECTIVITY", - "POLIO_VDPV_LOG_PARALYSIS_AND_LOG_INFECTIVITY" - ], - "type": "enum" - }, - "Vaccine_Dantigen_IPV1": { - "default": 40, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Potency of inactivated polio vaccine, in D-antigen units, for serotype 1 component.", - "max": 1000, - "min": 0, - "type": "float" - }, - "Vaccine_Dantigen_IPV2": { - "default": 8, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Potency of inactivated polio vaccine, in D-antigen units, for serotype 2 component.", - "max": 1000, - "min": 0, - "type": "float" - }, - "Vaccine_Dantigen_IPV3": { - "default": 32, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Potency of inactivated polio vaccine, in D-antigen units, for serotype 3 component.", - "max": 1000, - "min": 0, - "type": "float" - }, - "Vaccine_Genome_OPV1": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Vaccine_Genome_OPV1", - "max": 1023, - "min": 0, - "type": "integer" - }, - "Vaccine_Genome_OPV2": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Vaccine_Genome_OPV2", - "max": 1023, - "min": 0, - "type": "integer" - }, - "Vaccine_Genome_OPV3": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Vaccine_Genome_OPV3", - "max": 1023, - "min": 0, - "type": "integer" - }, - "Vaccine_Take_Scaling_Sabin1": { - "default": 1, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "A multiplier to represent vaccine take of live Sabin virus for type 1.", - "max": 1, - "min": 0, - "type": "float" - }, - "Vaccine_Take_Scaling_Sabin2": { - "default": 0.2779999971, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "A multiplier to represent vaccine take of live Sabin virus for type 2.", - "max": 1, - "min": 0, - "type": "float" - }, - "Vaccine_Take_Scaling_Sabin3": { - "default": 0.2630000114, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "A multiplier to represent vaccine take of live Sabin virus for type 3.", - "max": 1, - "min": 0, - "type": "float" - }, - "Vaccine_Titer_bOPV1": { - "default": 1000000, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Bivalent OPV titer in TCID50 per dose of type 1 component.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Vaccine_Titer_bOPV3": { - "default": 630000, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Bivalent OPV titer in TCID50 per dose of type 3 component.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Vaccine_Titer_mOPV1": { - "default": 1000000, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Monovalent OPV type 1 titer in TCID50 per dose.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Vaccine_Titer_mOPV2": { - "default": 100000, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Monovalent OPV type 2 titer in TCID50 per dose.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Vaccine_Titer_mOPV3": { - "default": 1000000, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Monovalent OPV type 3 titer in TCID50 per dose.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Vaccine_Titer_tOPV1": { - "default": 1000000, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Trivalent OPV titer in TCID50 per dose of type 1 component.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Vaccine_Titer_tOPV2": { - "default": 100000, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Trivalent OPV titer in TCID50 per dose of type 2 component.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Vaccine_Titer_tOPV3": { - "default": 630000, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Trivalent OPV titer in TCID50 per dose of type 3 component.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Viral_Interference_Sabin1": { - "default": 0.06530000269, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Probability that a Sabin1 infection in an individual will block superinfection by any other poliovirus type.", - "max": 1, - "min": 0, - "type": "float" - }, - "Viral_Interference_Sabin2": { - "default": 0.2779999971, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Probability that a Sabin2 infection in an individual will block superinfection by any other poliovirus type.", - "max": 1, - "min": 0, - "type": "float" - }, - "Viral_Interference_Sabin3": { - "default": 0.2630000114, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Probability that a Sabin3 infection in an individual will block superinfection by any other poliovirus type.", - "max": 1, - "min": 0, - "type": "float" - }, - "Viral_Interference_WPV1": { - "default": 0.06530000269, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Probability that a WPV1 infection in an individual will block infection by any other poliovirus type.", - "max": 1, - "min": 0, - "type": "float" - }, - "Viral_Interference_WPV2": { - "default": 0.2779999971, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Probability that a WPV2 infection in an individual will block infection by any other poliovirus type.", - "max": 1, - "min": 0, - "type": "float" - }, - "Viral_Interference_WPV3": { - "default": 0.2630000114, - "depends-on": { - "Simulation_Type": "POLIO_SIM" - }, - "description": "Probability that a WPV3 infection in an individual will block infection by any other poliovirus type.", - "max": 1, - "min": 0, - "type": "float" - } - }, - "RandomNumberGeneratorFactory": { - "Random_Number_Generator_Policy": { - "default": "ONE_PER_CORE", - "description": "The policy that determines if random numbers are generated for objects in a simulation on a per-core or per-node basis.", - "enum": [ - "ONE_PER_CORE", - "ONE_PER_NODE" - ], - "type": "enum" - }, - "Random_Number_Generator_Type": { - "default": "USE_PSEUDO_DES", - "description": "The type of random number generator to use for objects in a simulation. Must set the RNG seed in Run_Number.", - "enum": [ - "USE_PSEUDO_DES", - "USE_LINEAR_CONGRUENTIAL", - "USE_AES_COUNTER" - ], - "type": "enum" - }, - "Run_Number": { - "default": 1, - "description": "Sets the random number seed used with Random_Number_Generator_Type and Random_Number_Generator_Policy to assign random numbers to objects in a simulation.", - "max": 65535, - "min": 0, - "type": "integer" - } - }, - "ReportEventRecorder": { - "Report_Event_Recorder_Events": { - "default": [], - "depends-on": { - "Enable_Report_Event_Recorder": 1 - }, - "description": "The list of events to include or exclude in the ReportEventRecorder.csv output report, based on how Report_Event_Recorder_Ignore_Events_In_List is set.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "Vector Enum" - }, - "Report_Event_Recorder_Ignore_Events_In_List": { - "default": 0, - "depends-on": { - "Enable_Report_Event_Recorder": 1 - }, - "description": "If set to 0, only the events listed in the Report_Event_Recorder_Events array will be included in the ReportEventRecorder.csv output report. If set to 1, only the events listed in the array will be excluded, and all other events will be included. If you want to return all events from the simulation, leave the events array empty.", - "type": "bool" - }, - "Report_Event_Recorder_Individual_Properties": { - "default": [], - "depends-on": { - "Enable_Report_Event_Recorder": 1 - }, - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "Dynamic String Set", - "value_source": "::*.Individual_Properties.*.Property" - } - }, - "ReportEventRecorderCoordinator": { - "Report_Coordinator_Event_Recorder_Events": { - "default": [], - "depends-on": { - "Enable_Report_Coordinator_Event_Recorder": 1 - }, - "description": "The list of events to include or exclude in the ReportCoordinatorEventRecorder.csv output report, based on how **Report_Coordinator_Event_Recorder_Ignore_Events_In_List** is set.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "Vector Enum" - }, - "Report_Coordinator_Event_Recorder_Ignore_Events_In_List": { - "default": 0, - "depends-on": { - "Enable_Report_Coordinator_Event_Recorder": 1 - }, - "description": "If set to false (0), only the events listed in the **Report_Coordinator_Event_Recorder_Events** array will be included in the ReportCoordinatorEventRecorder.csv output report. If set to true (1), only the events listed in the array will be excluded, and all other events will be included. If you want to return all events from the simulation, leave the events array empty.", - "type": "bool" - } - }, - "ReportEventRecorderNode": { - "Report_Node_Event_Recorder_Events": { - "default": [], - "depends-on": { - "Enable_Report_Node_Event_Recorder": 1 - }, - "description": "TBD", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "Vector Enum" - }, - "Report_Node_Event_Recorder_Ignore_Events_In_List": { - "default": 0, - "depends-on": { - "Enable_Report_Node_Event_Recorder": 1 - }, - "description": "TBD", - "type": "bool" - }, - "Report_Node_Event_Recorder_Node_Properties": { - "default": [], - "depends-on": { - "Enable_Report_Node_Event_Recorder": 1 - }, - "description": "Specifies an array of (optional) node property keys, as defined in **NodeProperties** in the demographics file, to be added as additional columns to the ReportNodeEventRecorder.csv output report.", - "type": "Dynamic String Set", - "value_source": "::NodeProperties.*.Property" - }, - "Report_Node_Event_Recorder_Stats_By_IPs": { - "default": [], - "depends-on": { - "Enable_Report_Node_Event_Recorder": 1 - }, - "description": "Specifies an array of (optional) individual property keys, as defined in **IndividualProperties** in the demographics file, to be added to the ReportNodeEventRecorder.csv output report. An empty array equals no additional columns added.", - "type": "Dynamic String Set", - "value_source": "::*.Individual_Properties.*.Property" - } - }, - "ReportSurveillanceEventRecorder": { - "Report_Surveillance_Event_Recorder_Events": { - "default": [], - "depends-on": { - "Enable_Report_Surveillance_Event_Recorder": 1 - }, - "description": "The list of events to include or exclude in the ReportSurveillanceEventRecorder.csv output report, based on how **Report_Surveillance_Event_Recorder_Ignore_Events_In_List** is set.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "Vector Enum" - }, - "Report_Surveillance_Event_Recorder_Ignore_Events_In_List": { - "default": 0, - "depends-on": { - "Enable_Report_Surveillance_Event_Recorder": 1 - }, - "description": "If set to false (0), only the events listed in the **Report_Surveillance_Event_Recorder_Events** array will be included in the ReportSurveillanceEventRecorder.csv output report. If set to true (1), only the events listed in the array will be excluded, and all other events will be included. If you want to return all events from the simulation, leave the events array empty.", - "type": "bool" - }, - "Report_Surveillance_Event_Recorder_Stats_By_IPs": { - "default": [], - "depends-on": { - "Enable_Report_Surveillance_Event_Recorder": 1 - }, - "description": "Specifies an array of (optional) individual property keys, as defined in **IndividualProperties** in the demographics file, to be added to the ReportSurveillanceEventRecorder.csv output report.", - "type": "Dynamic String Set", - "value_source": "::*.Individual_Properties.*.Property" - } - }, - "SQLReporter": { - "SQL_Busy_Timeout": { - "default": 3000, - "depends-on": { - "Enable_Event_DB": 1 - }, - "description": "Milliseconds to timeout (exception) when database is locked for writing.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "SQL_Events": { - "default": [], - "depends-on": { - "Enable_Event_DB": 1 - }, - "description": "List of events to include in the SQLite event database.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "Vector Enum" - }, - "SQL_Report_Name": { - "default": "simulation_events.db", - "depends-on": { - "Enable_Event_DB": 1 - }, - "description": "Output file name for SQL report.", - "type": "string" - }, - "SQL_Start_Time": { - "default": 0, - "depends-on": { - "Enable_Event_DB": 1 - }, - "description": "Simulation time to start writing to the SQLite event database.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - } - }, - "SerializationParameters": { - "Enable_Random_Generator_From_Serialized_Population": { - "default": 0, - "depends-on": { - "Serialized_Population_Reading_Type": "READ" - }, - "description": "Determines if the random number generator(s) should be extracted from a serialized population file. Enabling this will start a simulation from this file with the exact same random number stream and location in that stream as when the file was serialized.", - "type": "bool" - }, - "Serialization_Mask_Node_Read": { - "default": 0, - "depends-on": { - "Serialized_Population_Reading_Type": "READ" - }, - "description": "A bit mask to control from where data is read. If the mask is set the configuration file is used. Currently the only supported mask is 16 (Larval_Habitats).", - "max": 4294967295, - "min": 0, - "type": "integer" - }, - "Serialization_Mask_Node_Write": { - "default": 0, - "depends-on": { - "Serialized_Population_Writing_Type": "TIME,TIMESTEP" - }, - "description": "A bit mask to control writing of data, e.g. to reduce file size. If the mask is set the data of the masked module is not written to file. Currently the only supported mask is 16 (Larval_Habitats).", - "max": 4294967295, - "min": 0, - "type": "integer" - }, - "Serialization_Precision": { - "default": "REDUCED", - "depends-on": { - "Serialized_Population_Writing_Type": "TIMESTEP,TIME" - }, - "description": "TBD-Default is REDUCED to reduce the size of the serialized file. FULL gives more floating point precision but creates larger files.", - "enum": [ - "REDUCED", - "FULL" - ], - "type": "enum" - }, - "Serialization_Time_Steps": { - "ascending": 0, - "default": [], - "depends-on": { - "Serialized_Population_Writing_Type": "TIMESTEP" - }, - "description": "The list of time steps after which to save the serialized state to file. 0 indicates the initial state before simulation, n indicates after the nth time step. The serialized population files can then be loaded at the beginning of a simulation using Serialized_Population_Filenames and Serialized_Population_Path.", - "max": 2147483647, - "min": -1, - "type": "Vector Int" - }, - "Serialization_Times": { - "ascending": 0, - "default": [], - "depends-on": { - "Serialized_Population_Writing_Type": "TIME" - }, - "description": "The list of times at which to save the serialized state to file. 0 indicates the initial state before simulation, n indicates the time to serialize in terms of start time and step size, and will be rounded up to the nearest time step. The serialized population files can then be loaded at the beginning of a simulation using Serialized_Population_Filenames and Serialized_Population_Path", - "max": 3.402823466e+38, - "min": -1, - "type": "Vector Float" - }, - "Serialized_Population_Filenames": { - "default": [], - "depends-on": { - "Serialized_Population_Reading_Type": "READ" - }, - "description": "An array of filenames with serialized population data. The number of filenames must match the number of cores used for the simulation.", - "type": "Vector String" - }, - "Serialized_Population_Path": { - "default": ".", - "depends-on": { - "Serialized_Population_Reading_Type": "READ" - }, - "description": "Root path for the serialized population files.", - "type": "string" - }, - "Serialized_Population_Reading_Type": { - "default": "NONE", - "description": "Set to READ to enable reading from a serialized population file, set to NONE otherwise.", - "enum": [ - "NONE", - "READ" - ], - "type": "enum" - }, - "Serialized_Population_Writing_Type": { - "default": "NONE", - "description": "The type of serialization to perform. NONE for no serialization, TIME to use definition from Serialization_Times, and TIMESTEP to use definition from Serialization_Time_Steps.", - "enum": [ - "NONE", - "TIME", - "TIMESTEP" - ], - "type": "enum" - } - }, - "SimConfig": { - "Base_Year": { - "default": 2015, - "depends-on": { - "Simulation_Type": "GENERIC_SIM,STI_SIM,HIV_SIM,TYPHOID_SIM" - }, - "description": "Absolute time in years when the simulation begins. This can be combined with CampaignEventByYear to trigger campaign events.", - "max": 2200, - "min": 1900, - "type": "float" - }, - "Campaign_Filename": { - "default": "", - "depends-on": { - "Enable_Interventions": 1 - }, - "description": "The path to the campaign file.", - "type": "string" - }, - "Custom_Reports_Filename": { - "default": "", - "description": "The name of the file containing custom report configuration parameters. Omitting this parameter or setting it to RunAllCustomReports will load all reporters found that are valid for the given simulation type.", - "type": "string" - }, - "Enable_Binned_Report": { - "default": 0, - "depends-on": { - "Enable_Demographics_Reporting": 1 - }, - "description": "Indicates if age-binned demographic reports are output to file.", - "type": "bool" - }, - "Enable_Default_Reporting": { - "default": 1, - "description": "Controls whether or not the default InsetChart.json report is created.", - "type": "bool" - }, - "Enable_Demographics_Reporting": { - "default": 0, - "description": "Indicates if demographic summary data are output to file.", - "type": "bool" - }, - "Enable_Event_DB": { - "default": 0, - "description": "Write out SQLite database of events.", - "type": "bool" - }, - "Enable_Interventions": { - "default": 0, - "description": "Controls whether or not campaign interventions will be used in the simulation.", - "type": "bool" - }, - "Enable_Network_Infectivity": { - "default": 0, - "depends-on": { - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Indicates if simulation should transfer infectivity between nodes.", - "type": "bool" - }, - "Enable_Property_Output": { - "default": 0, - "description": "Controls whether or not property output reports are created.", - "type": "bool" - }, - "Enable_Report_Coordinator_Event_Recorder": { - "default": 0, - "description": "Enables or disables the ReportCoordinatorEventRecorder.csv output report for coordinator events.", - "type": "bool" - }, - "Enable_Report_Event_Recorder": { - "default": 0, - "description": "Set to true (1) to enable or to false (0) to disable the ReportEventRecorder.csv output report that lists individual events in the simulation.", - "type": "bool" - }, - "Enable_Report_Node_Event_Recorder": { - "default": 0, - "description": "Enables or disables the ReportNodeEventRecorder.csv output report.", - "type": "bool" - }, - "Enable_Report_Surveillance_Event_Recorder": { - "default": 0, - "description": "Enables or disables the ReportCoordinatorEventRecorder.csv output report for coordinator events.", - "type": "bool" - }, - "Enable_Spatial_Output": { - "default": 0, - "description": "Controls whether or not spatial output reports are created.", - "type": "bool" - }, - "Enable_Termination_On_Total_Wall_Time": { - "default": 0, - "description": "Indicates if the simulation should be ended when total wall time exceeds specified maximum.", - "type": "bool" - }, - "Enable_Termination_On_Zero_Total_Infectivity": { - "default": 0, - "description": "Indicates if the simulation should be ended when total infectivity falls to zero.", - "type": "bool" - }, - "Load_Balance_Filename": { - "default": "", - "description": "Path to input file used when a static load balancing scheme is selected.", - "type": "string" - }, - "Minimum_End_Time": { - "default": 0, - "depends-on": { - "Enable_Termination_On_Zero_Total_Infectivity": 1 - }, - "description": "The minimum time step the simulation must reach before checking for early termination conditions.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Network_Infectivity_Coefficient": { - "ascending": 0, - "default": [], - "depends-on": { - "Enable_Network_Infectivity": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "List of coefficients to use in gravity model expression for network infectivity.", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "Network_Infectivity_Exponent": { - "ascending": 0, - "default": [], - "depends-on": { - "Enable_Network_Infectivity": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "List of distance exponents to use in gravity model expression for network infectivity.", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "Network_Infectivity_Max_Export_Frac": { - "default": 0.5, - "depends-on": { - "Enable_Network_Infectivity": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Maximum fraction of a node's infectivity that is exported when using network infectivity.", - "max": 1, - "min": 0, - "type": "float" - }, - "Network_Infectivity_Min_Connection": { - "default": 0, - "depends-on": { - "Enable_Network_Infectivity": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Minimum threshold to exceed for creating a connection for network infectivity. Zero implies full connectivity. Use small positive values to prune unimportant connections in large networks.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Network_Infectivity_Min_Distance": { - "default": 1, - "depends-on": { - "Enable_Network_Infectivity": 1, - "Simulation_Type": "GENERIC_SIM" - }, - "description": "Minimum distance between nodes to use in gravity model expression for network infectivity.", - "max": 3.402823466e+38, - "min": 0.009999999776, - "type": "float" - }, - "Simulation_Duration": { - "default": 1, - "description": "Elapsed time noted in days from the start to the end of a simulation.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Simulation_Timestep": { - "default": 1, - "description": "Value indicating simulation time step in days.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Simulation_Type": { - "default": "GENERIC_SIM", - "description": "Type of disease being simulated. IDM-supported values include GENERIC_SIM, VECTOR_SIM, MALARIA_SIM, TBHIV_SIM, STI_SIM, HIV_SIM, ENVIRONMENTAL_SIM, and TYPHOID_SIM. To query the values supported for your specific build, use the --version option.", - "enum": [ - "GENERIC_SIM", - "VECTOR_SIM", - "MALARIA_SIM", - "ENVIRONMENTAL_SIM", - "POLIO_SIM", - "AIRBORNE_SIM", - "TBHIV_SIM", - "STI_SIM", - "HIV_SIM", - "PY_SIM", - "TYPHOID_SIM", - "DENGUE_SIM" - ], - "type": "enum" - }, - "Start_Time": { - "default": 1, - "description": "Time noted in days when the simulation begins. This time influences the point in the temporal input data, such as where in the climate input EMOD starts running the simulation. Note: The Start_Day of campaign events is in absolute time. So, time relative to the beginning of the simulation depends on this parameter.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Wall_Time_Maximum_In_Minutes": { - "default": 1, - "depends-on": { - "Enable_Termination_On_Total_Wall_Time": 1 - }, - "description": "Maximum wall time in minutes to run the simulation.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - } - }, - "Simulation": {}, - "SpatialReport": { - "Spatial_Output_Channels": { - "default": [], - "depends-on": { - "Enable_Spatial_Output": 1 - }, - "description": "An array of channel names for spatial output by node and time step. The data from each channel will be written to a separate binary file. For full documentation of spatial output channels, please see the online documentation.", - "possible_values": [ - "Air_Temperature", - "Births", - "Campaign_Cost", - "Disease_Deaths", - "Exposed Fraction", - "Human_Infectious_Reservoir", - "Immunized Fraction", - "Infection_Rate", - "Infectious Fraction", - "Land_Temperature", - "New_Infections", - "New_Reported_Infections", - "Population", - "Prevalence", - "Rainfall", - "Recovered Fraction", - "Relative_Humidity", - "Susceptible Fraction" - ], - "type": "Fixed String Set" - } - }, - "Susceptibility": { - "Acquisition_Blocking_Immunity_Decay_Rate": { - "default": 0.001000000047, - "depends-on": { - "Enable_Immune_Decay": 1, - "Enable_Immunity": 1, - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,TYPHOID_SIM,STI_SIM,AIRBORNE_SIM,TBHIV_SIM,VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,PY_SIM" - }, - "description": "The rate at which acquisition-blocking immunity decays after the initial period indicated by the base acquisition-blocking immunity offset.", - "max": 1, - "min": 0, - "type": "float" - }, - "Acquisition_Blocking_Immunity_Duration_Before_Decay": { - "default": 0, - "depends-on": { - "Enable_Immune_Decay": 1, - "Enable_Immunity": 1, - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,TYPHOID_SIM,STI_SIM,AIRBORNE_SIM,TBHIV_SIM,VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,PY_SIM" - }, - "description": "The number of days after infection until acquisition-blocking immunity begins to decay.", - "max": 45000, - "min": 0, - "type": "float" - }, - "Enable_Immune_Decay": { - "default": 1, - "depends-on": { - "Enable_Immunity": 1, - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,TYPHOID_SIM,STI_SIM,AIRBORNE_SIM,TBHIV_SIM,VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,PY_SIM" - }, - "description": "Controls whether or not immunity decays after an infection clears.", - "type": "bool" - }, - "Mortality_Blocking_Immunity_Decay_Rate": { - "default": 0.001000000047, - "depends-on": { - "Enable_Immune_Decay": 1, - "Enable_Immunity": 1, - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,TYPHOID_SIM,STI_SIM,AIRBORNE_SIM,TBHIV_SIM,VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,PY_SIM" - }, - "description": "Rate at which mortality-blocking immunity decays after the mortality-blocking immunity offset period.", - "max": 1, - "min": 0, - "type": "float" - }, - "Mortality_Blocking_Immunity_Duration_Before_Decay": { - "default": 0, - "depends-on": { - "Enable_Immune_Decay": 1, - "Enable_Immunity": 1, - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,TYPHOID_SIM,STI_SIM,AIRBORNE_SIM,TBHIV_SIM,VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,PY_SIM" - }, - "description": "Number of days after infection until mortality-blocking immunity begins to decay.", - "max": 45000, - "min": 0, - "type": "float" - }, - "Post_Infection_Acquisition_Multiplier": { - "default": 0, - "depends-on": { - "Enable_Immunity": 1 - }, - "description": "Multiplicative reduction in probability of reacquiring the disease.", - "max": 1, - "min": 0, - "type": "float" - }, - "Post_Infection_Mortality_Multiplier": { - "default": 0, - "depends-on": { - "Enable_Immunity": 1 - }, - "description": "Multiplicative reduction in probability of dying from infection after getting re-infected.", - "max": 1, - "min": 0, - "type": "float" - }, - "Post_Infection_Transmission_Multiplier": { - "default": 0, - "depends-on": { - "Enable_Immunity": 1 - }, - "description": "Multiplicative reduction in probability of transmitting infection after getting re-infected.", - "max": 1, - "min": 0, - "type": "float" - }, - "Transmission_Blocking_Immunity_Decay_Rate": { - "default": 0.001000000047, - "depends-on": { - "Enable_Immune_Decay": 1, - "Enable_Immunity": 1, - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,TYPHOID_SIM,STI_SIM,AIRBORNE_SIM,TBHIV_SIM,VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,PY_SIM" - }, - "description": "Rate at which transmission-blocking immunity decays after the base transmission-blocking immunity offset period. Relevant only when Enable_Immunity and Enable_Immune_Decay parameters are set to 1.", - "max": 1, - "min": 0, - "type": "float" - }, - "Transmission_Blocking_Immunity_Duration_Before_Decay": { - "default": 0, - "depends-on": { - "Enable_Immune_Decay": 1, - "Enable_Immunity": 1, - "Simulation_Type": "GENERIC_SIM,ENVIRONMENTAL_SIM,POLIO_SIM,TYPHOID_SIM,STI_SIM,AIRBORNE_SIM,TBHIV_SIM,VECTOR_SIM,MALARIA_SIM,DENGUE_SIM,PY_SIM" - }, - "description": "Number of days after infection until transmission-blocking immunity begins to decay. Relevant only when Enable_Immunity and Enable_Immune_Decay parameters are set to 1.", - "max": 45000, - "min": 0, - "type": "float" - } - }, - "TBHIVConfig": { - "TBHIV_Drug_Params": { - "default": [], - "depends-on": { - "Simulation_Type": "TBHIV_SIM" - }, - "description": "This JSON structure contains the names of anti-tuberculosis drugs and the parameters that define them.", - "item_type": "idmType:TBHIVDrugTypeParameters", - "type": "Vector idmType:TBHIVDrugTypeParameters" - } - } - }, - "idmTypes": { - "idmAbstractType:CampaignEvent": { - "CampaignEvent": { - "Event_Coordinator_Config": { - "description": "An object that specifies how the event is handled by the simulation. It specifies which Event Coordinator class will handle the event, and then configures the coordinator.", - "type": "idmAbstractType:EventCoordinator" - }, - "Nodeset_Config": { - "description": "An object that specifies in which nodes the interventions will be distributed.", - "type": "idmAbstractType:NodeSet" - }, - "Start_Day": { - "default": 1, - "description": "The day of the simulation to activate the event's event coordinator.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "class": "CampaignEvent" - } - }, - "idmAbstractType:EventCoordinator": { - "BroadcastCoordinatorEvent": { - "Broadcast_Event": { - "default": "NoTrigger", - "description": "The event that should occur at the end of the delay period.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Coordinator_Name": { - "default": "BroadcastCoordinatorEvent", - "description": "The unique identifying coordinator name, which is useful with the output report, ReportCoordinatorEventRecorder.csv.", - "type": "string" - }, - "Cost_To_Consumer": { - "default": 0, - "description": "The unit cost of broadcasting the event.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "class": "BroadcastCoordinatorEvent" - }, - "CalendarEventCoordinator": { - "Cost_Assumes_Total_Coverage": { - "default": 0, - "description": "Individual intervention cost applies to all individuals in target demographic and ignores coverage.", - "type": "bool" - }, - "Distribution_Coverages": { - "ascending": 0, - "default": [], - "description": "A vector of floats for the fraction of individuals that will receive this intervention in a CalendarEventCoordinator.", - "max": 1, - "min": 0, - "type": "Vector Float" - }, - "Distribution_Times": { - "ascending": 0, - "default": [], - "description": "A vector of integers for simulation times at which distribution of events occurs in a CalendarEventCoordinator.", - "max": 2147483647, - "min": 1, - "type": "Vector Int" - }, - "ID_List": { - "ascending": 0, - "default": [], - "depends-on": { - "Target_Demographic": "ExplicitIDs" - }, - "description": "List of individual IDs for intervention. Usually used in conjunction with event DB and embedded Python in-processing.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Intervention_Config": { - "description": "The nested JSON of the actual intervention to be distributed by this event coordinator.", - "type": "idmAbstractType:Intervention" - }, - "Node_Property_Restrictions": { - "default": [], - "description": "A list of the NodeProperty key:value pairs, as defined in the demographics file, that nodes must have to be targeted by the intervention.", - "type": "idmType:PropertyRestriction" - }, - "Property_Restrictions": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "Dynamic String Set", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Property_Restrictions_Within_Node": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "idmType:PropertyRestriction" - }, - "Target_Age_Max": { - "default": 9.322804028e+35, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The upper end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Age_Min": { - "default": 0, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The lower end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Demographic": { - "default": "Everyone", - "description": "The target demographic group.", - "enum": [ - "Everyone", - "ExplicitAgeRanges", - "ExplicitAgeRangesAndGender", - "ExplicitGender", - "PossibleMothers", - "ArrivingAirTravellers", - "DepartingAirTravellers", - "ArrivingRoadTravellers", - "DepartingRoadTravellers", - "AllArrivingTravellers", - "AllDepartingTravellers", - "ExplicitDiseaseState", - "ExplicitIDs" - ], - "type": "enum" - }, - "Target_Gender": { - "default": "All", - "description": "Specifies the gender restriction for the intervention.", - "enum": [ - "All", - "Male", - "Female" - ], - "type": "enum" - }, - "Target_Residents_Only": { - "default": 0, - "description": "When set to true (1), the intervention is only distributed to individuals that began the simulation in the node (i.e. those that claim the node as their residence).", - "type": "bool" - }, - "class": "CalendarEventCoordinator" - }, - "CommunityHealthWorkerEventCoordinator": { - "Amount_In_Shipment": { - "default": 2147483647, - "description": "The number of interventions (such as vaccine doses) that a health worker or clinic receives in a shipment.", - "max": 2147483647, - "min": 0, - "type": "integer" - }, - "Days_Between_Shipments": { - "default": 3.402823466e+38, - "description": "The number of days to wait before a clinic or health worker receives a new shipment of interventions (such as vaccine doses).", - "max": 3.402823466e+38, - "min": 1, - "type": "float" - }, - "Demographic_Coverage": { - "default": 1, - "description": "The fraction of individuals in the target demographic that will receive this intervention.", - "max": 1, - "min": 0, - "type": "float" - }, - "Duration": { - "default": 3.402823466e+38, - "description": "The number of days for an event coordinator to be active before it expires.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "ID_List": { - "ascending": 0, - "default": [], - "depends-on": { - "Target_Demographic": "ExplicitIDs" - }, - "description": "List of individual IDs for intervention. Usually used in conjunction with event DB and embedded Python in-processing.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Initial_Amount_Constant": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to all individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Initial_Amount_Distribution": { - "default": "NOT_INITIALIZED", - "description": "The distribution type to use for assigning the initial amount of interventions in stock.", - "enum": [ - "NOT_INITIALIZED", - "CONSTANT_DISTRIBUTION", - "UNIFORM_DISTRIBUTION", - "GAUSSIAN_DISTRIBUTION", - "EXPONENTIAL_DISTRIBUTION", - "POISSON_DISTRIBUTION", - "LOG_NORMAL_DISTRIBUTION", - "DUAL_CONSTANT_DISTRIBUTION", - "WEIBULL_DISTRIBUTION", - "DUAL_EXPONENTIAL_DISTRIBUTION", - "GAMMA_DISTRIBUTION" - ], - "type": "enum" - }, - "Initial_Amount_Exponential": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean for an exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Initial_Amount_Gaussian_Mean": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The mean for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Initial_Amount_Gaussian_Std_Dev": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The standard deviation for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Initial_Amount_Kappa": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The shape value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Initial_Amount_Lambda": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The scale value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Initial_Amount_Log_Normal_Mu": { - "default": 3.402823466e+38, - "depends-on": { - "Initial_Amount_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The mean for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Initial_Amount_Log_Normal_Sigma": { - "default": 3.402823466e+38, - "depends-on": { - "Initial_Amount_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The width for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Initial_Amount_Max": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The maximum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Initial_Amount_Mean_1": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the first exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Initial_Amount_Mean_2": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the second exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Initial_Amount_Min": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The minimum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Initial_Amount_Peak_2_Value": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to the remaining individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Initial_Amount_Poisson_Mean": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "POISSON_DISTRIBUTION" - }, - "description": "The mean for a Poisson distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Initial_Amount_Proportion_0": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The proportion of individuals to assign a value of zero.", - "max": 1, - "min": 0, - "type": "float" - }, - "Initial_Amount_Proportion_1": { - "default": -1, - "depends-on": { - "Initial_Amount_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The proportion of individuals in the first exponential distribution.", - "max": 1, - "min": 0, - "type": "float" - }, - "Initial_Amount_Scale": { - "default": 1, - "depends-on": { - "Initial_Amount_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The scale parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Initial_Amount_Shape": { - "default": 1, - "depends-on": { - "Initial_Amount_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The shape parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Intervention_Config": { - "description": "The nested JSON of the actual intervention to be distributed by this event coordinator.", - "type": "idmAbstractType:Intervention" - }, - "Max_Distributed_Per_Day": { - "default": 2147483647, - "description": "The maximum number of interventions (such as vaccine doses) that can be distributed by health workers or clinics in a given day.", - "max": 2147483647, - "min": 1, - "type": "integer" - }, - "Max_Distributions_Per_Node": { - "default": 2147483647, - "description": "Maximum number of individuals in the target demographic that will receive this intervention.", - "max": 2147483647, - "min": 0, - "type": "integer" - }, - "Max_Stock": { - "default": 2147483647, - "description": "The maximum number of interventions (such as vaccine doses) that can be stored by a health worker or clinic.", - "max": 2147483647, - "min": 0, - "type": "integer" - }, - "Node_Property_Restrictions": { - "default": [], - "description": "TBD", - "type": "idmType:PropertyRestriction" - }, - "Property_Restrictions": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "Dynamic String Set", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Property_Restrictions_Within_Node": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "idmType:PropertyRestriction" - }, - "Target_Age_Max": { - "default": 9.322804028e+35, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The upper end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Age_Min": { - "default": 0, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The lower end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Demographic": { - "default": "Everyone", - "description": "The target demographic group.", - "enum": [ - "Everyone", - "ExplicitAgeRanges", - "ExplicitAgeRangesAndGender", - "ExplicitGender", - "PossibleMothers", - "ArrivingAirTravellers", - "DepartingAirTravellers", - "ArrivingRoadTravellers", - "DepartingRoadTravellers", - "AllArrivingTravellers", - "AllDepartingTravellers", - "ExplicitDiseaseState", - "ExplicitIDs" - ], - "type": "enum" - }, - "Target_Gender": { - "default": "All", - "description": "Specifies the gender restriction for the intervention.", - "enum": [ - "All", - "Male", - "Female" - ], - "type": "enum" - }, - "Target_Residents_Only": { - "default": 0, - "description": "When set to true (1), the intervention is only distributed to individuals that began the simulation in the node (i.e. those that claim the node as their residence).", - "type": "bool" - }, - "Trigger_Condition_List": { - "default": [], - "description": "The list of events that are of interest to the community health worker (CHW). If one of these events occurs, the individual or node is put into a queue to receive the CHW's intervention. The CHW processes the queue when the event coordinator is updated.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "Vector Enum" - }, - "Waiting_Period": { - "default": 3.402823466e+38, - "description": "The number of days a person or node can be in the queue waiting to get the intervention from the community health worker (CHW).", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "class": "CommunityHealthWorkerEventCoordinator" - }, - "CoverageByNodeEventCoordinator": { - "Cost_Assumes_Total_Coverage": { - "default": 0, - "description": "Individual intervention cost applies to all individuals in target demographic and ignores coverage.", - "type": "bool" - }, - "Coverage_By_Node": { - "default": [], - "description": "An array of (nodeID, coverage) pairs configuring the demographic coverage of interventions by node for the targeted populations. The coverage value must be a float between 0 and 1.", - "item_type": "idmType:NodeIdAndCoverage", - "type": "Vector idmType:NodeIdAndCoverage" - }, - "ID_List": { - "ascending": 0, - "default": [], - "depends-on": { - "Target_Demographic": "ExplicitIDs" - }, - "description": "List of individual IDs for intervention. Usually used in conjunction with event DB and embedded Python in-processing.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Intervention_Config": { - "description": "The nested JSON of the actual intervention to be distributed by this event coordinator.", - "type": "idmAbstractType:Intervention" - }, - "Node_Property_Restrictions": { - "default": [], - "description": "A list of the NodeProperty key:value pairs, as defined in the demographics file, that nodes must have to be targeted by the intervention.", - "type": "idmType:PropertyRestriction" - }, - "Number_Repetitions": { - "default": 1, - "description": "The number of times an intervention is given, used with Timesteps_Between_Repetitions.", - "max": 10000, - "min": -1, - "type": "integer" - }, - "Property_Restrictions": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "Dynamic String Set", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Property_Restrictions_Within_Node": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "idmType:PropertyRestriction" - }, - "Target_Age_Max": { - "default": 9.322804028e+35, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The upper end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Age_Min": { - "default": 0, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The lower end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Demographic": { - "default": "Everyone", - "description": "The target demographic group.", - "enum": [ - "Everyone", - "ExplicitAgeRanges", - "ExplicitAgeRangesAndGender", - "ExplicitGender", - "PossibleMothers", - "ArrivingAirTravellers", - "DepartingAirTravellers", - "ArrivingRoadTravellers", - "DepartingRoadTravellers", - "AllArrivingTravellers", - "AllDepartingTravellers", - "ExplicitDiseaseState", - "ExplicitIDs" - ], - "type": "enum" - }, - "Target_Gender": { - "default": "All", - "description": "Specifies the gender restriction for the intervention.", - "enum": [ - "All", - "Male", - "Female" - ], - "type": "enum" - }, - "Target_Residents_Only": { - "default": 0, - "description": "When set to true (1), the intervention is only distributed to individuals that began the simulation in the node (i.e. those that claim the node as their residence).", - "type": "bool" - }, - "Timesteps_Between_Repetitions": { - "default": -1, - "description": "The repetition interval.", - "max": 10000, - "min": -1, - "type": "integer" - }, - "class": "CoverageByNodeEventCoordinator" - }, - "DelayEventCoordinator": { - "Coordinator_Name": { - "default": "DelayEventCoordinator", - "description": "The unique identifying coordinator name used to identify the different coordinators in reports.", - "type": "string" - }, - "Delay_Complete_Event": { - "default": "NoTrigger", - "description": "The delay completion event to be included in the ReportCoordinatorEventRecorder.csv output report, upon completion of the delay period.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Delay_Period_Constant": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to all individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Delay_Period_Distribution": { - "default": "NOT_INITIALIZED", - "description": "The distribution type to use for assigning the delay period for distributing interventions.", - "enum": [ - "NOT_INITIALIZED", - "CONSTANT_DISTRIBUTION", - "UNIFORM_DISTRIBUTION", - "GAUSSIAN_DISTRIBUTION", - "EXPONENTIAL_DISTRIBUTION", - "POISSON_DISTRIBUTION", - "LOG_NORMAL_DISTRIBUTION", - "DUAL_CONSTANT_DISTRIBUTION", - "WEIBULL_DISTRIBUTION", - "DUAL_EXPONENTIAL_DISTRIBUTION", - "GAMMA_DISTRIBUTION" - ], - "type": "enum" - }, - "Delay_Period_Exponential": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean for an exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Gaussian_Mean": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The mean for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Delay_Period_Gaussian_Std_Dev": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The standard deviation for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Kappa": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The shape value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Lambda": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The scale value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Log_Normal_Mu": { - "default": 3.402823466e+38, - "depends-on": { - "Delay_Period_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The mean for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Delay_Period_Log_Normal_Sigma": { - "default": 3.402823466e+38, - "depends-on": { - "Delay_Period_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The width for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Delay_Period_Max": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The maximum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Delay_Period_Mean_1": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the first exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Mean_2": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the second exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Min": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The minimum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Delay_Period_Peak_2_Value": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to the remaining individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Delay_Period_Poisson_Mean": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "POISSON_DISTRIBUTION" - }, - "description": "The mean for a Poisson distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Delay_Period_Proportion_0": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The proportion of individuals to assign a value of zero.", - "max": 1, - "min": 0, - "type": "float" - }, - "Delay_Period_Proportion_1": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The proportion of individuals in the first exponential distribution.", - "max": 1, - "min": 0, - "type": "float" - }, - "Delay_Period_Scale": { - "default": 1, - "depends-on": { - "Delay_Period_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The scale parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Shape": { - "default": 1, - "depends-on": { - "Delay_Period_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The shape parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration": { - "default": -1, - "description": "The time period (in days) that the triggered event coordinator is active before it expires.", - "max": 3.402823466e+38, - "min": -1, - "type": "float" - }, - "Sim_Types": [ - "*" - ], - "Start_Trigger_Condition_List": { - "default": "NoTrigger", - "description": "The trigger condition event list that when heard will start a new set of repetitions for the triggered event coordinator. The list cannot be empty.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Stop_Trigger_Condition_List": { - "default": "NoTrigger", - "description": "The trigger condition event list that when heard will stop any repetitions for the triggered event coordinator until a start trigger condition event list is received. The list can be empty.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "class": "DelayEventCoordinator" - }, - "GroupInterventionDistributionEventCoordinator": { - "Cost_Assumes_Total_Coverage": { - "default": 0, - "description": "Individual intervention cost applies to all individuals in target demographic and ignores coverage.", - "type": "bool" - }, - "Demographic_Coverage": { - "default": 1, - "description": "The fraction of individuals in the target demographic that will receive this intervention.", - "max": 1, - "min": 0, - "type": "float" - }, - "ID_List": { - "ascending": 0, - "default": [], - "depends-on": { - "Target_Demographic": "ExplicitIDs" - }, - "description": "List of individual IDs for intervention. Usually used in conjunction with event DB and embedded Python in-processing.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Intervention_Config": { - "description": "The nested JSON of the actual intervention to be distributed by this event coordinator.", - "type": "idmAbstractType:Intervention" - }, - "Max_Distributions_Per_Node": { - "default": 2147483647, - "description": "Maximum number of individuals in the target demographic that will receive this intervention.", - "max": 2147483647, - "min": 0, - "type": "integer" - }, - "Node_Property_Restrictions": { - "default": [], - "description": "A list of the NodeProperty key:value pairs, as defined in the demographics file, that nodes must have to be targeted by the intervention.", - "type": "idmType:PropertyRestriction" - }, - "Number_Repetitions": { - "default": 1, - "description": "The number of times an intervention is given, used with Timesteps_Between_Repetitions.", - "max": 10000, - "min": -1, - "type": "integer" - }, - "Property_Restrictions": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "Dynamic String Set", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Property_Restrictions_Within_Node": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "idmType:PropertyRestriction" - }, - "Target_Age_Max": { - "default": 9.322804028e+35, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The upper end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Age_Min": { - "default": 0, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The lower end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Demographic": { - "default": "Everyone", - "description": "The target demographic group.", - "enum": [ - "Everyone", - "ExplicitAgeRanges", - "ExplicitAgeRangesAndGender", - "ExplicitGender", - "PossibleMothers", - "ArrivingAirTravellers", - "DepartingAirTravellers", - "ArrivingRoadTravellers", - "DepartingRoadTravellers", - "AllArrivingTravellers", - "AllDepartingTravellers", - "ExplicitDiseaseState", - "ExplicitIDs" - ], - "type": "enum" - }, - "Target_Disease_State": { - "default": "Everyone", - "description": "The disease state group targeted by this intervention.", - "enum": [ - "Everyone", - "Infected", - "ActiveInfection", - "LatentInfection", - "MDR", - "TreatmentNaive", - "HasFailedTreatment", - "HIVNegative", - "ActiveHadTreatment" - ], - "type": "enum" - }, - "Target_Gender": { - "default": "All", - "description": "Specifies the gender restriction for the intervention.", - "enum": [ - "All", - "Male", - "Female" - ], - "type": "enum" - }, - "Target_Residents_Only": { - "default": 0, - "description": "When set to true (1), the intervention is only distributed to individuals that began the simulation in the node (i.e. those that claim the node as their residence).", - "type": "bool" - }, - "Timesteps_Between_Repetitions": { - "default": -1, - "description": "The repetition interval.", - "max": 10000, - "min": -1, - "type": "integer" - }, - "class": "GroupInterventionDistributionEventCoordinator" - }, - "IncidenceEventCoordinator": { - "Incidence_Counter": { - "description": "List of JSON objects for specifying the conditions and parameters that must be met for an incidence to be counted.", - "type": "idmType:IncidenceCounter" - }, - "Number_Repetitions": { - "default": 1, - "description": "The number of times an intervention is given, used with Timesteps_Between_Repetitions.", - "max": 1000, - "min": -1, - "type": "integer" - }, - "Responder": { - "description": "List of JSON objects for specifying the threshold type, values, and the actions to take when the specified conditions and parameters have been met, as configured in the Incidence_Counter parameter.", - "type": "idmType:Responder" - }, - "Timesteps_Between_Repetitions": { - "default": -1, - "description": "The repetition interval.", - "max": 10000, - "min": -1, - "type": "integer" - }, - "class": "IncidenceEventCoordinator" - }, - "NChooserEventCoordinator": { - "Distributions": { - "default": [], - "description": "The ordered list of elements defining when, to whom, and how many interventions to distribute.", - "item_type": "idmType:TargetedDistribution", - "type": "Vector idmType:TargetedDistribution" - }, - "Intervention_Config": { - "description": "The nested JSON of the actual intervention to be distributed by this event coordinator.", - "type": "idmAbstractType:Intervention" - }, - "class": "NChooserEventCoordinator" - }, - "StandardInterventionDistributionEventCoordinator": { - "Cost_Assumes_Total_Coverage": { - "default": 0, - "description": "Individual intervention cost applies to all individuals in target demographic and ignores coverage.", - "type": "bool" - }, - "Demographic_Coverage": { - "default": 1, - "description": "The fraction of individuals in the target demographic that will receive this intervention.", - "max": 1, - "min": 0, - "type": "float" - }, - "ID_List": { - "ascending": 0, - "default": [], - "depends-on": { - "Target_Demographic": "ExplicitIDs" - }, - "description": "List of individual IDs for intervention. Usually used in conjunction with event DB and embedded Python in-processing.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Intervention_Config": { - "description": "The nested JSON of the actual intervention to be distributed by this event coordinator.", - "type": "idmAbstractType:Intervention" - }, - "Max_Distributions_Per_Node": { - "default": 2147483647, - "description": "Maximum number of individuals in the target demographic that will receive this intervention.", - "max": 2147483647, - "min": 0, - "type": "integer" - }, - "Node_Property_Restrictions": { - "default": [], - "description": "A list of the NodeProperty key:value pairs, as defined in the demographics file, that nodes must have to be targeted by the intervention.", - "type": "idmType:PropertyRestriction" - }, - "Number_Repetitions": { - "default": 1, - "description": "The number of times an intervention is given, used with Timesteps_Between_Repetitions.", - "max": 10000, - "min": -1, - "type": "integer" - }, - "Property_Restrictions": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "Dynamic String Set", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Property_Restrictions_Within_Node": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "idmType:PropertyRestriction" - }, - "Target_Age_Max": { - "default": 9.322804028e+35, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The upper end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Age_Min": { - "default": 0, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The lower end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Demographic": { - "default": "Everyone", - "description": "The target demographic group.", - "enum": [ - "Everyone", - "ExplicitAgeRanges", - "ExplicitAgeRangesAndGender", - "ExplicitGender", - "PossibleMothers", - "ArrivingAirTravellers", - "DepartingAirTravellers", - "ArrivingRoadTravellers", - "DepartingRoadTravellers", - "AllArrivingTravellers", - "AllDepartingTravellers", - "ExplicitDiseaseState", - "ExplicitIDs" - ], - "type": "enum" - }, - "Target_Gender": { - "default": "All", - "description": "Specifies the gender restriction for the intervention.", - "enum": [ - "All", - "Male", - "Female" - ], - "type": "enum" - }, - "Target_Residents_Only": { - "default": 0, - "description": "When set to true (1), the intervention is only distributed to individuals that began the simulation in the node (i.e. those that claim the node as their residence).", - "type": "bool" - }, - "Timesteps_Between_Repetitions": { - "default": -1, - "description": "The repetition interval.", - "max": 10000, - "min": -1, - "type": "integer" - }, - "class": "StandardInterventionDistributionEventCoordinator" - }, - "SurveillanceEventCoordinator": { - "Coordinator_Name": { - "default": "SurveillanceEventCoordinator", - "description": "The unique identifying coordinator name, which is useful with the output report, ReportSurveillanceEventRecorder.csv.", - "type": "string" - }, - "Duration": { - "default": -1, - "description": "The number of days from when the surveillance event coordinator was created by the campaign event. Once the number of days has passed, the delay event coordinator will unregister for events and expire. The default value of '-1' = never expire.", - "max": 3.402823466e+38, - "min": -1, - "type": "float" - }, - "Incidence_Counter": { - "description": "List of JSON objects for specifying the conditions and parameters that must be met for an incidence to be counted.", - "type": "idmType:IncidenceCounterSurveillance" - }, - "Responder": { - "description": "List of JSON objects for specifying the threshold type, values, and the actions to take when the specified conditions and parameters have been met, as configured in the Incidence_Counter parameter.", - "type": "idmType:ResponderSurveillance" - }, - "Sim_Types": [ - "*" - ], - "Start_Trigger_Condition_List": { - "default": "NoTrigger", - "description": "The trigger event list, as specified in the **Custom_Coordinator_Events** config parameter, that will start **Incidence_Counter** counting events.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Stop_Trigger_Condition_List": { - "default": "NoTrigger", - "description": "The broadcast event list, as specified in the **Custom_Coordinator_Events** config parameter, that will stop **Incidence_Counter** counting events.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "class": "SurveillanceEventCoordinator" - }, - "TriggeredEventCoordinator": { - "Completion_Event": { - "default": "NoTrigger", - "description": "The completion event list that will be broadcast every time the triggered event coordinator completes a set of repetitions.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Coordinator_Name": { - "default": "TriggeredEventCoordinator", - "description": "The unique identifying coordinator name used to identify the different coordinators in reports.", - "type": "string" - }, - "Cost_Assumes_Total_Coverage": { - "default": 0, - "description": "Individual intervention cost applies to all individuals in target demographic and ignores coverage.", - "type": "bool" - }, - "Duration": { - "default": -1, - "description": "The time period (in days) that the triggered event coordinator is active before it expires.", - "max": 3.402823466e+38, - "min": -1, - "type": "float" - }, - "ID_List": { - "ascending": 0, - "default": [], - "depends-on": { - "Target_Demographic": "ExplicitIDs" - }, - "description": "List of individual IDs for intervention. Usually used in conjunction with event DB and embedded Python in-processing.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Intervention_Config": { - "description": "The nested JSON of the actual intervention to be distributed by this event coordinator.", - "type": "idmAbstractType:Intervention" - }, - "Node_Property_Restrictions": { - "default": [], - "description": "A list of the NodeProperty key:value pairs, as defined in the demographics file, that nodes must have to be targeted by the intervention.", - "type": "idmType:PropertyRestriction" - }, - "Number_Repetitions": { - "default": 1, - "description": "The number of times an intervention is given, used with Timesteps_Between_Repetitions.", - "max": 10000, - "min": -1, - "type": "integer" - }, - "Property_Restrictions": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "Dynamic String Set", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Property_Restrictions_Within_Node": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "idmType:PropertyRestriction" - }, - "Sim_Types": [ - "*" - ], - "Start_Trigger_Condition_List": { - "default": "NoTrigger", - "description": "The trigger condition event list that when heard will start a new set of repetitions for the triggered event coordinator. The list cannot be empty.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Stop_Trigger_Condition_List": { - "default": "NoTrigger", - "description": "The trigger condition event list that when heard will stop any repetitions for the triggered event coordinator until a start trigger condition event list is received. The list can be empty.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Target_Age_Max": { - "default": 9.322804028e+35, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The upper end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Age_Min": { - "default": 0, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The lower end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Demographic": { - "default": "Everyone", - "description": "The target demographic group.", - "enum": [ - "Everyone", - "ExplicitAgeRanges", - "ExplicitAgeRangesAndGender", - "ExplicitGender", - "PossibleMothers", - "ArrivingAirTravellers", - "DepartingAirTravellers", - "ArrivingRoadTravellers", - "DepartingRoadTravellers", - "AllArrivingTravellers", - "AllDepartingTravellers", - "ExplicitDiseaseState", - "ExplicitIDs" - ], - "type": "enum" - }, - "Target_Gender": { - "default": "All", - "description": "Specifies the gender restriction for the intervention.", - "enum": [ - "All", - "Male", - "Female" - ], - "type": "enum" - }, - "Target_Residents_Only": { - "default": 0, - "description": "When set to true (1), the intervention is only distributed to individuals that began the simulation in the node (i.e. those that claim the node as their residence).", - "type": "bool" - }, - "Timesteps_Between_Repetitions": { - "default": -1, - "description": "The repetition interval.", - "max": 10000, - "min": -1, - "type": "integer" - }, - "class": "TriggeredEventCoordinator" - } - }, - "idmAbstractType:Intervention": { - "idmAbstractType:IndividualIntervention": { - "BroadcastEvent": { - "Broadcast_Event": { - "default": "NoTrigger", - "description": "The event that should occur at the end of the delay period.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of IndividualProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Event_Trigger_Distributed": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention is distributed. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Expired": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention expires. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Intervention_Name": { - "default": "BroadcastEvent", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "New_Property_Value": { - "default": "", - "description": "An optional IndividualProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Sim_Types": [ - "*" - ], - "class": "BroadcastEvent" - }, - "BroadcastEventToOtherNodes": { - "Disqualifying_Properties": { - "default": [], - "description": "A list of IndividualProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Event_Trigger": { - "default": "NoTrigger", - "description": "The name of the event to broadcast to selected nodes.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Distributed": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention is distributed. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Expired": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention expires. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Include_My_Node": { - "default": 0, - "description": "Set to true (1) to broadcast the event to the current node.", - "type": "bool" - }, - "Intervention_Name": { - "default": "BroadcastEventToOtherNodes", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Max_Distance_To_Other_Nodes_Km": { - "default": 3.402823466e+38, - "description": "The maximum distance, in kilometers, to the destination node for the node to be selected.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "New_Property_Value": { - "default": "", - "description": "An optional IndividualProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Node_Selection_Type": { - "default": "DISTANCE_ONLY", - "description": "The method by which to select nodes to receive the event.", - "enum": [ - "DISTANCE_ONLY", - "MIGRATION_NODES_ONLY", - "DISTANCE_AND_MIGRATION" - ], - "type": "enum" - }, - "Sim_Types": [ - "*" - ], - "class": "BroadcastEventToOtherNodes" - }, - "DelayedIntervention": { - "Actual_IndividualIntervention_Configs": { - "description": "An array of nested interventions to be distributed at the end of a delay period, to covered fraction of the population.", - "type": "idmAbstractType:IndividualIntervention" - }, - "Cost_To_Consumer": { - "default": 0, - "description": "Cost per individual receiving the intervention.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Coverage": { - "default": 1, - "description": "The proportion of individuals who receive the DelayedIntervention that actually receive the configured interventions.", - "max": 1, - "min": 0, - "type": "float" - }, - "Delay_Period_Constant": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to all individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Delay_Period_Distribution": { - "default": "NOT_INITIALIZED", - "description": "The distribution type to use for assigning the delay period for distributing interventions.", - "enum": [ - "NOT_INITIALIZED", - "CONSTANT_DISTRIBUTION", - "UNIFORM_DISTRIBUTION", - "GAUSSIAN_DISTRIBUTION", - "EXPONENTIAL_DISTRIBUTION", - "POISSON_DISTRIBUTION", - "LOG_NORMAL_DISTRIBUTION", - "DUAL_CONSTANT_DISTRIBUTION", - "WEIBULL_DISTRIBUTION", - "DUAL_EXPONENTIAL_DISTRIBUTION", - "GAMMA_DISTRIBUTION" - ], - "type": "enum" - }, - "Delay_Period_Exponential": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean for an exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Gaussian_Mean": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The mean for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Delay_Period_Gaussian_Std_Dev": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The standard deviation for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Kappa": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The shape value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Lambda": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The scale value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Log_Normal_Mu": { - "default": 3.402823466e+38, - "depends-on": { - "Delay_Period_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The mean for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Delay_Period_Log_Normal_Sigma": { - "default": 3.402823466e+38, - "depends-on": { - "Delay_Period_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The width for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Delay_Period_Max": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The maximum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Delay_Period_Mean_1": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the first exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Mean_2": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the second exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Min": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The minimum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Delay_Period_Peak_2_Value": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to the remaining individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Delay_Period_Poisson_Mean": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "POISSON_DISTRIBUTION" - }, - "description": "The mean for a Poisson distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Delay_Period_Proportion_0": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The proportion of individuals to assign a value of zero.", - "max": 1, - "min": 0, - "type": "float" - }, - "Delay_Period_Proportion_1": { - "default": -1, - "depends-on": { - "Delay_Period_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The proportion of individuals in the first exponential distribution.", - "max": 1, - "min": 0, - "type": "float" - }, - "Delay_Period_Scale": { - "default": 1, - "depends-on": { - "Delay_Period_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The scale parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Delay_Period_Shape": { - "default": 1, - "depends-on": { - "Delay_Period_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The shape parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of IndividualProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Event_Trigger_Distributed": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention is distributed. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Expired": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention expires. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Intervention_Name": { - "default": "DelayedIntervention", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "New_Property_Value": { - "default": "", - "description": "An optional IndividualProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Sim_Types": [ - "*" - ], - "class": "DelayedIntervention" - }, - "IVCalendar": { - "Actual_IndividualIntervention_Configs": { - "description": "An array of interventions that will be distributed as specified in the calendar.", - "type": "idmAbstractType:IndividualIntervention" - }, - "Calendar": { - "default": [], - "description": "An array of ages, days and the probabilities of receiving the list of interventions at each age.", - "item_type": "idmType:AgeAndProbability", - "type": "Vector idmType:AgeAndProbability" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of IndividualProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Dropout": { - "default": 0, - "description": "If set to true (1), when an intervention distribution is missed, all subsequent interventions are also missed. If set to false (0), all calendar dates/doses are applied independently of each other.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Event_Trigger_Distributed": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention is distributed. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Expired": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention expires. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Intervention_Name": { - "default": "IVCalendar", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "New_Property_Value": { - "default": "", - "description": "An optional IndividualProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Sim_Types": [ - "*" - ], - "class": "IVCalendar" - }, - "ImmunityBloodTest": { - "Base_Sensitivity": { - "default": 1, - "description": "The sensitivity of the diagnostic. This sets the proportion of the time that individuals with the condition being tested receive a positive diagnostic test. When set to zero, then individuals who have the condition always receive a false-negative diagnostic test.", - "max": 1, - "min": 0, - "type": "float" - }, - "Base_Specificity": { - "default": 1, - "description": "The specificity of the diagnostic. This sets the proportion of the time that individuals without the condition being tested receive a negative diagnostic test. When set to 1, the diagnostic always accurately reflects the lack of having the condition. When set to zero, then individuals who do not have the condition always receive a false-positive diagnostic test.", - "max": 1, - "min": 0, - "type": "float" - }, - "Cost_To_Consumer": { - "default": 1, - "description": "The unit 'cost' assigned to the diagnostic. Setting Cost_To_Consumer to zero for all other interventions, and to a non-zero amount for one intervention, provides a convenient way to track the number of times the intervention has been applied in a simulation.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Days_To_Diagnosis": { - "default": 0, - "description": "The number of days from test until diagnosis.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of IndividualProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Enable_IsSymptomatic": { - "default": 0, - "description": "If true, requires an infection to be symptomatic to return a positive test.", - "type": "bool" - }, - "Event_Trigger_Distributed": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention is distributed. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Expired": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention expires. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Intervention_Name": { - "default": "ImmunityBloodTest", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Negative_Diagnosis_Event": { - "default": "NoTrigger", - "description": "If an individual tests negative (does not have immunity), then an individual type event is broadcast. This may trigger another intervention when the event occurs. Only used when **Event_Or_Config** is set to Event.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "New_Property_Value": { - "default": "", - "description": "An optional IndividualProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Positive_Diagnosis_Config": { - "depends-on": { - "Event_Or_Config": "Config" - }, - "description": "The intervention distributed to individuals if they test positive. Only used when Event_Or_Config is set to Config.", - "type": "idmAbstractType:IndividualIntervention" - }, - "Positive_Diagnosis_Event": { - "default": "NoTrigger", - "description": "If the test is positive, this specifies an event that can trigger another intervention when the event occurs. Only used if Event_Or_Config is set to Event.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Positive_Threshold_AcquisitionImmunity": { - "default": 1, - "description": "Specifies the threshold for acquired immunity, where 1 equals 100% immunity and 0 equals 100% susceptible.", - "max": 1, - "min": 0, - "type": "float" - }, - "Sim_Types": [ - "*" - ], - "Treatment_Fraction": { - "default": 1, - "description": "The fraction of positive diagnoses that are treated.", - "max": 1, - "min": 0, - "type": "float" - }, - "class": "ImmunityBloodTest" - }, - "MigrateIndividuals": { - "Disqualifying_Properties": { - "default": [], - "description": "A list of IndividualProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Duration_At_Node_Constant": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to all individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Distribution": { - "default": "NOT_INITIALIZED", - "description": "The distribution type to use for assigning the duration of time an individual or family spends at a destination node after intervention-based migration.", - "enum": [ - "NOT_INITIALIZED", - "CONSTANT_DISTRIBUTION", - "UNIFORM_DISTRIBUTION", - "GAUSSIAN_DISTRIBUTION", - "EXPONENTIAL_DISTRIBUTION", - "POISSON_DISTRIBUTION", - "LOG_NORMAL_DISTRIBUTION", - "DUAL_CONSTANT_DISTRIBUTION", - "WEIBULL_DISTRIBUTION", - "DUAL_EXPONENTIAL_DISTRIBUTION", - "GAMMA_DISTRIBUTION" - ], - "type": "enum" - }, - "Duration_At_Node_Exponential": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean for an exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Gaussian_Mean": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The mean for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Gaussian_Std_Dev": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The standard deviation for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Kappa": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The shape value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Lambda": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The scale value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Log_Normal_Mu": { - "default": 3.402823466e+38, - "depends-on": { - "Duration_At_Node_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The mean for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Duration_At_Node_Log_Normal_Sigma": { - "default": 3.402823466e+38, - "depends-on": { - "Duration_At_Node_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The width for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Duration_At_Node_Max": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The maximum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Mean_1": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the first exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Mean_2": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the second exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Min": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The minimum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Peak_2_Value": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to the remaining individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Poisson_Mean": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "POISSON_DISTRIBUTION" - }, - "description": "The mean for a Poisson distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Proportion_0": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The proportion of individuals to assign a value of zero.", - "max": 1, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Proportion_1": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The proportion of individuals in the first exponential distribution.", - "max": 1, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Scale": { - "default": 1, - "depends-on": { - "Duration_At_Node_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The scale parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Shape": { - "default": 1, - "depends-on": { - "Duration_At_Node_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The shape parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Constant": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to all individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Distribution": { - "default": "NOT_INITIALIZED", - "description": "The distribution type to use for assigning the duration of time an individual or family waits before migrating to the a destination node after intervention-based migration.", - "enum": [ - "NOT_INITIALIZED", - "CONSTANT_DISTRIBUTION", - "UNIFORM_DISTRIBUTION", - "GAUSSIAN_DISTRIBUTION", - "EXPONENTIAL_DISTRIBUTION", - "POISSON_DISTRIBUTION", - "LOG_NORMAL_DISTRIBUTION", - "DUAL_CONSTANT_DISTRIBUTION", - "WEIBULL_DISTRIBUTION", - "DUAL_EXPONENTIAL_DISTRIBUTION", - "GAMMA_DISTRIBUTION" - ], - "type": "enum" - }, - "Duration_Before_Leaving_Exponential": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean for an exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Gaussian_Mean": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The mean for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Gaussian_Std_Dev": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The standard deviation for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Kappa": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The shape value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Lambda": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The scale value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Log_Normal_Mu": { - "default": 3.402823466e+38, - "depends-on": { - "Duration_Before_Leaving_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The mean for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Duration_Before_Leaving_Log_Normal_Sigma": { - "default": 3.402823466e+38, - "depends-on": { - "Duration_Before_Leaving_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The width for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Duration_Before_Leaving_Max": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The maximum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Mean_1": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the first exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Mean_2": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the second exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Min": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The minimum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Peak_2_Value": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to the remaining individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Poisson_Mean": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "POISSON_DISTRIBUTION" - }, - "description": "The mean for a Poisson distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Proportion_0": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The proportion of individuals to assign a value of zero.", - "max": 1, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Proportion_1": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The proportion of individuals in the first exponential distribution.", - "max": 1, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Scale": { - "default": 1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The scale parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Shape": { - "default": 1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The shape parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Event_Trigger_Distributed": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention is distributed. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Expired": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention expires. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Intervention_Name": { - "default": "MigrateIndividuals", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Is_Moving": { - "default": 0, - "description": "Set to true (1) to indicate the individual is permanently moving to a new home node for intervention-based migration.", - "type": "bool" - }, - "New_Property_Value": { - "default": "", - "description": "An optional IndividualProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "NodeID_To_Migrate_To": { - "default": 0, - "description": "The destination node ID for intervention-based migration.", - "max": 4294967295, - "min": 0, - "type": "integer" - }, - "Sim_Types": [ - "*" - ], - "class": "MigrateIndividuals" - }, - "MultiInterventionDistributor": { - "Disqualifying_Properties": { - "default": [], - "description": "A list of IndividualProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Event_Trigger_Distributed": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention is distributed. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Expired": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention expires. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Intervention_List": { - "description": "The list of individual interventions that is distributed by MultiInterventionDistributor.", - "type": "idmAbstractType:IndividualIntervention" - }, - "Intervention_Name": { - "default": "MultiInterventionDistributor", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "New_Property_Value": { - "default": "", - "description": "An optional IndividualProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Sim_Types": [ - "*" - ], - "class": "MultiInterventionDistributor" - }, - "OutbreakIndividual": { - "Clade": { - "default": 0, - "description": "The clade ID of the outbreak infection.", - "max": 9, - "min": 0, - "type": "integer" - }, - "Cost_To_Consumer": { - "default": 0, - "description": "Cost per individual receiving the intervention.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of IndividualProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Event_Trigger_Distributed": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention is distributed. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Expired": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention expires. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Genome": { - "default": 0, - "depends-on": { - "Simulation_Type": "GENERIC_SIM,VECTOR_SIM,AIRBORNE_SIM,POLIO_SIM,TBHIV_SIM,STI_SIM,HIV_SIM,PY_SIM,DENGUE_SIM,MALARIA_SIM" - }, - "description": "The genetic substrain ID of the outbreak infection.", - "max": 1677215, - "min": 0, - "type": "integer" - }, - "Ignore_Immunity": { - "default": 1, - "description": "Individuals will be force-infected (with a specific strain) regardless of actual immunity level when set to true (1).", - "type": "bool" - }, - "Incubation_Period_Override": { - "default": -1, - "description": "The incubation period, in days, that infected individuals will go through before becoming infectious. This value overrides the incubation period set in the configuration file. Set to -1 to honor the configuration parameter settings.", - "max": 3.402823466e+38, - "min": -1, - "type": "float" - }, - "Intervention_Name": { - "default": "OutbreakIndividual", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "New_Property_Value": { - "default": "", - "description": "An optional IndividualProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Sim_Types": [ - "GENERIC_SIM", - "VECTOR_SIM", - "MALARIA_SIM", - "AIRBORNE_SIM", - "POLIO_SIM", - "TBHIV_SIM", - "STI_SIM", - "HIV_SIM", - "PY_SIM", - "TYPHOID_SIM", - "ENVIRONMENTAL_SIM" - ], - "class": "OutbreakIndividual" - }, - "PropertyValueChanger": { - "Daily_Probability": { - "default": 1, - "description": "The daily probability that an individual will move to the Target_Property_Value.", - "max": 1, - "min": 0, - "type": "float" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of IndividualProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Event_Trigger_Distributed": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention is distributed. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Expired": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention expires. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Intervention_Name": { - "default": "PropertyValueChanger", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Maximum_Duration": { - "default": 3.402823466e+38, - "description": "The maximum amount of time individuals have to move to a new group. This timing works in conjunction with Daily_Probability.", - "max": 3.402823466e+38, - "min": -1, - "type": "float" - }, - "New_Property_Value": { - "default": "", - "description": "An optional IndividualProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Revert": { - "default": 0, - "description": "The number of days before an individual moves back to their original group.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Sim_Types": [ - "*" - ], - "Target_Property_Key": { - "default": "UNINITIALIZED STRING", - "description": "The name of the individual property type whose value will be updated by the intervention.", - "type": "Constrained String", - "value_source": "::*.Individual_Properties.*.Property" - }, - "Target_Property_Value": { - "default": "UNINITIALIZED STRING", - "description": "The user-defined value of the individual property that will be assigned to the individual.", - "type": "Constrained String", - "value_source": "::*.Individual_Properties.*.Values" - }, - "class": "PropertyValueChanger" - }, - "SimpleDiagnostic": { - "Base_Sensitivity": { - "default": 1, - "description": "The sensitivity of the diagnostic. This sets the proportion of the time that individuals with the condition being tested receive a positive diagnostic test. When set to zero, then individuals who have the condition always receive a false-negative diagnostic test.", - "max": 1, - "min": 0, - "type": "float" - }, - "Base_Specificity": { - "default": 1, - "description": "The specificity of the diagnostic. This sets the proportion of the time that individuals without the condition being tested receive a negative diagnostic test. When set to 1, the diagnostic always accurately reflects the lack of having the condition. When set to zero, then individuals who do not have the condition always receive a false-positive diagnostic test.", - "max": 1, - "min": 0, - "type": "float" - }, - "Cost_To_Consumer": { - "default": 1, - "description": "The unit 'cost' assigned to the diagnostic. Setting Cost_To_Consumer to zero for all other interventions, and to a non-zero amount for one intervention, provides a convenient way to track the number of times the intervention has been applied in a simulation.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Days_To_Diagnosis": { - "default": 0, - "description": "The number of days from test until diagnosis.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of IndividualProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Enable_IsSymptomatic": { - "default": 0, - "description": "If true, requires an infection to be symptomatic to return a positive test.", - "type": "bool" - }, - "Event_Or_Config": { - "default": "Config", - "description": "Specifies whether the current intervention (or a positive diagnosis, depending on the intervention class) distributes a nested intervention (the Config option) or an event will be broadcast which may trigger other interventions in the campaign file (the Event option).", - "enum": [ - "Config", - "Event" - ], - "type": "enum" - }, - "Event_Trigger_Distributed": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention is distributed. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Expired": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention expires. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Intervention_Name": { - "default": "SimpleDiagnostic", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "New_Property_Value": { - "default": "", - "description": "An optional IndividualProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Positive_Diagnosis_Config": { - "depends-on": { - "Event_Or_Config": "Config" - }, - "description": "The intervention distributed to individuals if they test positive. Only used when Event_Or_Config is set to Config.", - "type": "idmAbstractType:IndividualIntervention" - }, - "Positive_Diagnosis_Event": { - "default": "NoTrigger", - "description": "If the test is positive, this specifies an event that can trigger another intervention when the event occurs. Only used if Event_Or_Config is set to Event.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Sim_Types": [ - "*" - ], - "Treatment_Fraction": { - "default": 1, - "description": "The fraction of positive diagnoses that are treated.", - "max": 1, - "min": 0, - "type": "float" - }, - "class": "SimpleDiagnostic" - }, - "SimpleHealthSeekingBehavior": { - "Actual_IndividualIntervention_Config": { - "depends-on": { - "Event_Or_Config": "Config" - }, - "description": "The configuration of an actual intervention sought. Selects a class for the intervention and configures the parameters specific for that intervention class.", - "type": "idmAbstractType:IndividualIntervention" - }, - "Actual_IndividualIntervention_Event": { - "default": "NoTrigger", - "description": "The event of an actual intervention sought. Selects a class for the intervention and configures the parameters specific for that intervention class. See the list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of IndividualProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Event_Or_Config": { - "default": "Config", - "description": "Specifies whether the current intervention (or a positive diagnosis, depending on the intervention class) distributes a nested intervention (the Config option) or an event will be broadcast which may trigger other interventions in the campaign file (the Event option).", - "enum": [ - "Config", - "Event" - ], - "type": "enum" - }, - "Event_Trigger_Distributed": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention is distributed. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Expired": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention expires. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Intervention_Name": { - "default": "SimpleHealthSeekingBehavior", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "New_Property_Value": { - "default": "", - "description": "An optional IndividualProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Sim_Types": [ - "*" - ], - "Single_Use": { - "default": 1, - "description": "If set to true (1), the health-seeking behavior gets used once and discarded. If set to false (0), it remains indefinitely.", - "type": "bool" - }, - "Tendency": { - "default": 1, - "description": "The probability of seeking healthcare.", - "max": 1, - "min": 0, - "type": "float" - }, - "class": "SimpleHealthSeekingBehavior" - }, - "Vaccine": { - "Acquire_Config": { - "description": "Waning effect configuration for vaccine acquisition.", - "type": "idmType:WaningEffect" - }, - "Cost_To_Consumer": { - "default": 10, - "description": "Unit cost per vaccine.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of IndividualProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Event_Trigger_Distributed": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention is distributed. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Trigger_Expired": { - "default": "NoTrigger", - "description": "Event to be broadcast when intervention expires. See list of available events for possible values.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Initial_Acquire_By_Current_Effect_Multiplier": { - "description": "Multiplier for initial acquire effect based on current total acquire effect; uses interpolated value map.", - "type": "idmType:InterpolatedValueMap" - }, - "Initial_Mortality_By_Current_Effect_Multiplier": { - "description": "Multiplier for initial mortality effect based on current total mortality effect; uses interpolated value map.", - "type": "idmType:InterpolatedValueMap" - }, - "Initial_Transmit_By_Current_Effect_Multiplier": { - "description": "Multiplier for initial transmit effect based on current total transmit effect; uses interpolated value map.", - "type": "idmType:InterpolatedValueMap" - }, - "Intervention_Name": { - "default": "Vaccine", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Mortality_Config": { - "description": "Waning effect configuration for vaccine transmission.", - "type": "idmType:WaningEffect" - }, - "New_Property_Value": { - "default": "", - "description": "An optional IndividualProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Sim_Types": [ - "*" - ], - "Take_By_Age_Multiplier": { - "description": "Multiplier for take probability based on indvidual age in days; uses interpolated value map.", - "type": "idmType:InterpolatedValueMap" - }, - "Take_Reduced_By_Acquire_Immunity": { - "default": 0, - "description": "Fraction of current acquision immunity applied to vaccine take reduction.", - "max": 1, - "min": 0, - "type": "float" - }, - "Transmit_Config": { - "description": "Waning effect configuration for vaccine mortality.", - "type": "idmType:WaningEffect" - }, - "Vaccine_Route": { - "default": "ALL", - "description": "Transmission route affected by vaccine.", - "enum": [ - "ALL", - "CONTACT", - "ENVIRONMENTAL" - ], - "type": "enum" - }, - "Vaccine_Take": { - "default": 1, - "description": "Probability vaccine will successfully be applied at the specified effect.", - "max": 1, - "min": 0, - "type": "float" - }, - "class": "Vaccine" - } - }, - "idmAbstractType:NodeIntervention": { - "BroadcastNodeEvent": { - "Broadcast_Event": { - "default": "NoTrigger", - "description": "The event that should occur at the end of the delay period.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Cost_To_Consumer": { - "default": 0, - "description": "The unit cost of the intervention campaign that will be assigned to the specified nodes.", - "max": 999999, - "min": 0, - "type": "float" - }, - "Sim_Types": [ - "*" - ], - "class": "BroadcastNodeEvent" - }, - "ChangeIPMatrix": { - "New_Matrix": { - "default": [], - "description": "New transmission matrix for specified individual property.", - "max": 3.402823466e+38, - "min": -3.402823466e+38, - "type": "Vector2d Float" - }, - "Property_Name": { - "default": "", - "description": "Individual property to target for matrix replacement.", - "type": "string" - }, - "Sim_Types": [ - "GENERIC_SIM", - "VECTOR_SIM", - "MALARIA_SIM", - "AIRBORNE_SIM", - "POLIO_SIM", - "TBHIV_SIM", - "STI_SIM", - "HIV_SIM", - "PY_SIM", - "TYPHOID_SIM", - "ENVIRONMENTAL_SIM" - ], - "class": "ChangeIPMatrix" - }, - "EnvironmentalDiagnostic": { - "Base_Sensitivity": { - "default": 1, - "description": "The likelihood that a positive measurement was made. If the contagion measurement is greater than the Sample_Threshold, a random number is drawn to determine if the detection was actually made.", - "max": 1, - "min": 0, - "type": "float" - }, - "Base_Specificity": { - "default": 1, - "description": "The specificity of the diagnostic. This sets the proportion of the time that individuals without the condition being tested receive a negative diagnostic test. When set to 1, the diagnostic always accurately reflects the lack of having the condition. When set to zero, then individuals who do not have the condition always receive a false-positive diagnostic test.", - "max": 1, - "min": 0, - "type": "float" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of NodeProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Environment_IP_Key_Value": { - "default": "", - "description": "An IndividualProperty key:value pair that indicates a specific transmission pool, typically used to identify a location. If none is provided, the sample will be taken on the entire node.", - "type": "Constrained String", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Intervention_Name": { - "default": "EnvironmentalDiagnostic", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Negative_Diagnosis_Event": { - "default": "NoTrigger", - "description": "The event that will be broadcast to the node when the sample value is less than the threshold (e.g. the test is negative). If this is an empty string or set to NoTrigger, no event will be broadcast.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "New_Property_Value": { - "default": "", - "description": "An optional NodeProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::NodeProperties.*.Property':'::NodeProperties.*.Values'" - }, - "Positive_Diagnosis_Event": { - "default": "NoTrigger", - "description": "The event that will be broadcast to the node when the sample value is greater than the threshold (e.g. the test is positive). This cannot be an empty string or set to NoTrigger.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Sample_Threshold": { - "default": 0, - "description": "The threshold that delineates a positive versus negative sampling result. If the sample is greater than the threshold, a positive finding will result; if the value is less than the threshold, it will be negative. This does not include values equal to the threshold so that the threshold can be set to zero; if the threshold is zero, the test is simply looking for any deposit in the transmission pool.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Sim_Types": [ - "GENERIC_SIM", - "ENVIRONMENTAL_SIM", - "TYPHOID_SIM" - ], - "class": "EnvironmentalDiagnostic" - }, - "ImportPressure": { - "Clade": { - "default": 0, - "description": "The clade ID of the outbreak infection.", - "max": 9, - "min": 0, - "type": "integer" - }, - "Daily_Import_Pressures": { - "ascending": 0, - "default": [], - "description": "The rate of per-day importation for each node that the intervention is distributed to.", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "Durations": { - "ascending": 0, - "default": [], - "description": "The durations over which to apply import pressure.", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "Genome": { - "default": 0, - "description": "The genetic substrain ID of the outbreak infection.", - "max": 1677215, - "min": 0, - "type": "integer" - }, - "Import_Age": { - "default": 365, - "description": "The age (in days) of infected import cases.", - "max": 45625, - "min": 0, - "type": "float" - }, - "Import_Agent_MC_Weight": { - "default": 1, - "description": "Sampling weight of imported agents.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Import_Female_Prob": { - "default": 0.5, - "description": "Probability an imported agent will be female.", - "max": 1, - "min": 0, - "type": "float" - }, - "Number_Cases_Per_Node": { - "default": 1, - "description": "The number of new cases of Outbreak to import (per node).", - "max": 2147483647, - "min": 0, - "type": "integer" - }, - "Probability_Of_Infection": { - "default": 1, - "description": "Probability an imported agent will be infected.", - "max": 1, - "min": 0, - "type": "float" - }, - "Sim_Types": [ - "GENERIC_SIM", - "VECTOR_SIM", - "MALARIA_SIM", - "AIRBORNE_SIM", - "POLIO_SIM", - "TBHIV_SIM", - "STI_SIM", - "HIV_SIM", - "PY_SIM", - "TYPHOID_SIM", - "ENVIRONMENTAL_SIM", - "DENGUE_SIM" - ], - "class": "ImportPressure" - }, - "MigrateFamily": { - "Disqualifying_Properties": { - "default": [], - "description": "A list of NodeProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Duration_At_Node_Constant": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to all individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Distribution": { - "default": "NOT_INITIALIZED", - "description": "The distribution type to use for assigning the duration of time an individual or family spends at a destination node after intervention-based migration.", - "enum": [ - "NOT_INITIALIZED", - "CONSTANT_DISTRIBUTION", - "UNIFORM_DISTRIBUTION", - "GAUSSIAN_DISTRIBUTION", - "EXPONENTIAL_DISTRIBUTION", - "POISSON_DISTRIBUTION", - "LOG_NORMAL_DISTRIBUTION", - "DUAL_CONSTANT_DISTRIBUTION", - "WEIBULL_DISTRIBUTION", - "DUAL_EXPONENTIAL_DISTRIBUTION", - "GAMMA_DISTRIBUTION" - ], - "type": "enum" - }, - "Duration_At_Node_Exponential": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean for an exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Gaussian_Mean": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The mean for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Gaussian_Std_Dev": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The standard deviation for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Kappa": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The shape value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Lambda": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The scale value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Log_Normal_Mu": { - "default": 3.402823466e+38, - "depends-on": { - "Duration_At_Node_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The mean for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Duration_At_Node_Log_Normal_Sigma": { - "default": 3.402823466e+38, - "depends-on": { - "Duration_At_Node_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The width for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Duration_At_Node_Max": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The maximum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Mean_1": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the first exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Mean_2": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the second exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Min": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The minimum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Peak_2_Value": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to the remaining individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Poisson_Mean": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "POISSON_DISTRIBUTION" - }, - "description": "The mean for a Poisson distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Proportion_0": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The proportion of individuals to assign a value of zero.", - "max": 1, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Proportion_1": { - "default": -1, - "depends-on": { - "Duration_At_Node_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The proportion of individuals in the first exponential distribution.", - "max": 1, - "min": 0, - "type": "float" - }, - "Duration_At_Node_Scale": { - "default": 1, - "depends-on": { - "Duration_At_Node_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The scale parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_At_Node_Shape": { - "default": 1, - "depends-on": { - "Duration_At_Node_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The shape parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Constant": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to all individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Distribution": { - "default": "NOT_INITIALIZED", - "description": "The distribution type to use for assigning the duration of time an individual or family waits before migrating to the a destination node after intervention-based migration.", - "enum": [ - "NOT_INITIALIZED", - "CONSTANT_DISTRIBUTION", - "UNIFORM_DISTRIBUTION", - "GAUSSIAN_DISTRIBUTION", - "EXPONENTIAL_DISTRIBUTION", - "POISSON_DISTRIBUTION", - "LOG_NORMAL_DISTRIBUTION", - "DUAL_CONSTANT_DISTRIBUTION", - "WEIBULL_DISTRIBUTION", - "DUAL_EXPONENTIAL_DISTRIBUTION", - "GAMMA_DISTRIBUTION" - ], - "type": "enum" - }, - "Duration_Before_Leaving_Exponential": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean for an exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Gaussian_Mean": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The mean for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Gaussian_Std_Dev": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The standard deviation for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Kappa": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The shape value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Lambda": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "WEIBULL_DISTRIBUTION" - }, - "description": "The scale value in a Weibull distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Log_Normal_Mu": { - "default": 3.402823466e+38, - "depends-on": { - "Duration_Before_Leaving_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The mean for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Duration_Before_Leaving_Log_Normal_Sigma": { - "default": 3.402823466e+38, - "depends-on": { - "Duration_Before_Leaving_Distribution": "LOG_NORMAL_DISTRIBUTION" - }, - "description": "The width for a log-normal distribution.", - "max": 1.701411733e+38, - "min": -3.402823466e+38, - "type": "float" - }, - "Duration_Before_Leaving_Max": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The maximum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Mean_1": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the first exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Mean_2": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean of the second exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Min": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "UNIFORM_DISTRIBUTION" - }, - "description": "The minimum of the uniform distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Peak_2_Value": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The value to assign to the remaining individuals.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Poisson_Mean": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "POISSON_DISTRIBUTION" - }, - "description": "The mean for a Poisson distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Proportion_0": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "DUAL_CONSTANT_DISTRIBUTION" - }, - "description": "The proportion of individuals to assign a value of zero.", - "max": 1, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Proportion_1": { - "default": -1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "DUAL_EXPONENTIAL_DISTRIBUTION" - }, - "description": "The proportion of individuals in the first exponential distribution.", - "max": 1, - "min": 0, - "type": "float" - }, - "Duration_Before_Leaving_Scale": { - "default": 1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The scale parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Duration_Before_Leaving_Shape": { - "default": 1, - "depends-on": { - "Duration_Before_Leaving_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The shape parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Intervention_Name": { - "default": "MigrateFamily", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Is_Moving": { - "default": 0, - "description": "Set to true (1) to indicate the individual is permanently moving to a new home node for intervention-based migration.", - "type": "bool" - }, - "New_Property_Value": { - "default": "", - "description": "An optional NodeProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::NodeProperties.*.Property':'::NodeProperties.*.Values'" - }, - "NodeID_To_Migrate_To": { - "default": 0, - "description": "The destination node ID for intervention-based migration.", - "max": 4294967295, - "min": 0, - "type": "integer" - }, - "Sim_Types": [ - "*" - ], - "class": "MigrateFamily" - }, - "MultiNodeInterventionDistributor": { - "Disqualifying_Properties": { - "default": [], - "description": "A list of NodeProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Intervention_Name": { - "default": "MultiNodeInterventionDistributor", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "New_Property_Value": { - "default": "", - "description": "An optional NodeProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::NodeProperties.*.Property':'::NodeProperties.*.Values'" - }, - "Node_Intervention_List": { - "description": "A list of nested JSON objects for the multi-node-level interventions to be distributed by this intervention.", - "type": "idmAbstractType:NodeIntervention" - }, - "Sim_Types": [ - "*" - ], - "class": "MultiNodeInterventionDistributor" - }, - "NLHTIVNode": { - "Actual_NodeIntervention_Config": { - "description": "The configuration of the actual node-level intervention sought.", - "type": "idmAbstractType:NodeIntervention" - }, - "Blackout_Event_Trigger": { - "default": "NoTrigger", - "description": "The event to broadcast if an intervention cannot be distributed due to the Blackout_Period.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Blackout_On_First_Occurrence": { - "default": 0, - "description": "If set to true (1), individuals will enter the blackout period after the first occurrence of an event in the Trigger_Condition_List.", - "type": "bool" - }, - "Blackout_Period": { - "default": 0, - "description": "After the initial intervention distribution, the time, in days, to wait before distributing the intervention again. If it cannot distribute due to the blackout period, it will broadcast the user-defined Blackout_Event_Trigger.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of NodeProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Duration": { - "default": -1, - "description": "The number of days to continue this intervention.", - "max": 3.402823466e+38, - "min": -1, - "type": "float" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Intervention_Name": { - "default": "NLHTIVNode", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "New_Property_Value": { - "default": "", - "description": "An optional NodeProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::NodeProperties.*.Property':'::NodeProperties.*.Values'" - }, - "Node_Property_Restrictions": { - "default": [], - "description": "A list of the NodeProperty key:value pairs, as defined in the demographics file, that nodes must have to be targeted by the intervention.", - "type": "idmType:PropertyRestriction" - }, - "Sim_Types": [ - "*" - ], - "Trigger_Condition_List": { - "default": [], - "description": "A list of events that trigger a health seeking intervention.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "Vector Enum" - }, - "class": "NLHTIVNode" - }, - "NodeBirthRateMult": { - "Disqualifying_Properties": { - "default": [], - "description": "A list of NodeProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Intervention_Name": { - "default": "NodeBirthRateMult", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Multiplier_By_Duration": { - "description": "Value of birth rate multiplier based on the duration of the intervention; uses interpolated value map.", - "type": "idmType:InterpolatedValueMap" - }, - "New_Property_Value": { - "default": "", - "description": "An optional NodeProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::NodeProperties.*.Property':'::NodeProperties.*.Values'" - }, - "Sim_Types": [ - "*" - ], - "class": "NodeBirthRateMult" - }, - "NodeInfectivityMult": { - "Disqualifying_Properties": { - "default": [], - "description": "A list of NodeProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Intervention_Name": { - "default": "NodeInfectivityMult", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Multiplier_By_Duration": { - "description": "Value of infectivity multiplier based on the duration of the intervention; uses interpolated value map.", - "type": "idmType:InterpolatedValueMap" - }, - "New_Property_Value": { - "default": "", - "description": "An optional NodeProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::NodeProperties.*.Property':'::NodeProperties.*.Values'" - }, - "Sim_Types": [ - "*" - ], - "Transmission_Route": { - "default": "CONTACT", - "description": "Transmssion route to be multiplied by the intervention.", - "enum": [ - "CONTACT", - "ENVIRONMENTAL", - "OUTBREAK", - "VECTOR_TO_HUMAN", - "VECTOR_TO_HUMAN_INDOOR", - "VECTOR_TO_HUMAN_OUTDOOR", - "HUMAN_TO_VECTOR", - "HUMAN_TO_VECTOR_INDOOR", - "HUMAN_TO_VECTOR_OUTDOOR", - "INDOOR", - "OUTDOOR" - ], - "type": "enum" - }, - "class": "NodeInfectivityMult" - }, - "NodeLevelHealthTriggeredIV": { - "Actual_IndividualIntervention_Config": { - "description": "The configuration of an actual individual intervention sought.", - "type": "idmAbstractType:IndividualIntervention" - }, - "Actual_NodeIntervention_Config": { - "description": "The configuration of the actual node-level intervention sought.", - "type": "idmAbstractType:NodeIntervention" - }, - "Blackout_Event_Trigger": { - "default": "NoTrigger", - "description": "The event to broadcast if an intervention cannot be distributed due to the Blackout_Period.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Blackout_On_First_Occurrence": { - "default": 0, - "description": "If set to true (1), individuals will enter the blackout period after the first occurrence of an event in the Trigger_Condition_List.", - "type": "bool" - }, - "Blackout_Period": { - "default": 0, - "description": "After the initial intervention distribution, the time, in days, to wait before distributing the intervention again. If it cannot distribute due to the blackout period, it will broadcast the user-defined Blackout_Event_Trigger.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Demographic_Coverage": { - "default": 1, - "description": "The fraction of individuals in the target demographic that will receive this intervention.", - "max": 1, - "min": 0, - "type": "float" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of NodeProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Distribute_On_Return_Home": { - "default": 0, - "description": "When set to true (1), individuals will receive an intervention upon returning home if that intervention was originally distributed while the individual was away.", - "type": "bool" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Duration": { - "default": -1, - "description": "The number of days to continue this intervention.", - "max": 3.402823466e+38, - "min": -1, - "type": "float" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "ID_List": { - "ascending": 0, - "default": [], - "depends-on": { - "Target_Demographic": "ExplicitIDs" - }, - "description": "List of individual IDs for intervention. Usually used in conjunction with event DB and embedded Python in-processing.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Intervention_Name": { - "default": "NodeLevelHealthTriggeredIV", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Max_Distributions_Per_Node": { - "default": 2147483647, - "description": "Maximum number of individuals in the target demographic that will receive this intervention.", - "max": 2147483647, - "min": 0, - "type": "integer" - }, - "New_Property_Value": { - "default": "", - "description": "An optional NodeProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::NodeProperties.*.Property':'::NodeProperties.*.Values'" - }, - "Node_Property_Restrictions": { - "default": [], - "description": "A list of the NodeProperty key:value pairs, as defined in the demographics file, that nodes must have to be targeted by the intervention.", - "type": "idmType:PropertyRestriction" - }, - "Property_Restrictions": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "Dynamic String Set", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Property_Restrictions_Within_Node": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "idmType:PropertyRestriction" - }, - "Sim_Types": [ - "*" - ], - "Target_Age_Max": { - "default": 9.322804028e+35, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The upper end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Age_Min": { - "default": 0, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The lower end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Demographic": { - "default": "Everyone", - "description": "The target demographic group.", - "enum": [ - "Everyone", - "ExplicitAgeRanges", - "ExplicitAgeRangesAndGender", - "ExplicitGender", - "PossibleMothers", - "ArrivingAirTravellers", - "DepartingAirTravellers", - "ArrivingRoadTravellers", - "DepartingRoadTravellers", - "AllArrivingTravellers", - "AllDepartingTravellers", - "ExplicitDiseaseState", - "ExplicitIDs" - ], - "type": "enum" - }, - "Target_Gender": { - "default": "All", - "description": "Specifies the gender restriction for the intervention.", - "enum": [ - "All", - "Male", - "Female" - ], - "type": "enum" - }, - "Target_Residents_Only": { - "default": 0, - "description": "When set to true (1), the intervention is only distributed to individuals that began the simulation in the node (i.e. those that claim the node as their residence).", - "type": "bool" - }, - "Trigger_Condition_List": { - "default": [], - "description": "A list of events that trigger a health seeking intervention.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "Vector Enum" - }, - "class": "NodeLevelHealthTriggeredIV" - }, - "NodeLevelHealthTriggeredIVScaleUpSwitch": { - "Actual_IndividualIntervention_Config": { - "description": "The configuration of an actual individual intervention sought.", - "type": "idmAbstractType:IndividualIntervention" - }, - "Actual_NodeIntervention_Config": { - "description": "The configuration of the actual node-level intervention sought.", - "type": "idmAbstractType:NodeIntervention" - }, - "Blackout_Event_Trigger": { - "default": "NoTrigger", - "description": "The event to broadcast if an intervention cannot be distributed due to the Blackout_Period.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Blackout_On_First_Occurrence": { - "default": 0, - "description": "If set to true (1), individuals will enter the blackout period after the first occurrence of an event in the Trigger_Condition_List.", - "type": "bool" - }, - "Blackout_Period": { - "default": 0, - "description": "After the initial intervention distribution, the time, in days, to wait before distributing the intervention again. If it cannot distribute due to the blackout period, it will broadcast the user-defined Blackout_Event_Trigger.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Coverage_vs_Time_Interpolation_Map": { - "depends-on": { - "Demographic_Coverage_Time_Profile": "InterpolationMap" - }, - "description": "Interpolated value map for coverage as a function of time.", - "type": "idmType:InterpolatedValueMap" - }, - "Demographic_Coverage": { - "default": 1, - "description": "The fraction of individuals in the target demographic that will receive this intervention.", - "max": 1, - "min": 0, - "type": "float" - }, - "Demographic_Coverage_Time_Profile": { - "default": "Immediate", - "description": "Profile of ramp up to demographic coverage.", - "enum": [ - "Immediate", - "Linear", - "InterpolationMap" - ], - "type": "enum" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of NodeProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Distribute_On_Return_Home": { - "default": 0, - "description": "When set to true (1), individuals will receive an intervention upon returning home if that intervention was originally distributed while the individual was away.", - "type": "bool" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Duration": { - "default": -1, - "description": "The number of days to continue this intervention.", - "max": 3.402823466e+38, - "min": -1, - "type": "float" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "ID_List": { - "ascending": 0, - "default": [], - "depends-on": { - "Target_Demographic": "ExplicitIDs" - }, - "description": "List of individual IDs for intervention. Usually used in conjunction with event DB and embedded Python in-processing.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Initial_Demographic_Coverage": { - "default": 0, - "depends-on": { - "Demographic_Coverage_Time_Profile": "Linear" - }, - "description": "The initial level of demographic coverage if using linear scale up.", - "max": 1, - "min": 0, - "type": "float" - }, - "Intervention_Name": { - "default": "NodeLevelHealthTriggeredIVScaleUpSwitch", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Max_Distributions_Per_Node": { - "default": 2147483647, - "description": "Maximum number of individuals in the target demographic that will receive this intervention.", - "max": 2147483647, - "min": 0, - "type": "integer" - }, - "New_Property_Value": { - "default": "", - "description": "An optional NodeProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::NodeProperties.*.Property':'::NodeProperties.*.Values'" - }, - "Node_Property_Restrictions": { - "default": [], - "description": "A list of the NodeProperty key:value pairs, as defined in the demographics file, that nodes must have to be targeted by the intervention.", - "type": "idmType:PropertyRestriction" - }, - "Not_Covered_IndividualIntervention_Configs": { - "description": "The array of interventions that is distributed if an individual qualifies according to all parameters except Demographic_Coverage.", - "type": "idmAbstractType:IndividualIntervention" - }, - "Primary_Time_Constant": { - "default": 1, - "depends-on": { - "Demographic_Coverage_Time_Profile": "Linear" - }, - "description": "The time to full scale-up of demographic coverage.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Property_Restrictions": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "Dynamic String Set", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Property_Restrictions_Within_Node": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "idmType:PropertyRestriction" - }, - "Sim_Types": [ - "*" - ], - "Target_Age_Max": { - "default": 9.322804028e+35, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The upper end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Age_Min": { - "default": 0, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The lower end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Demographic": { - "default": "Everyone", - "description": "The target demographic group.", - "enum": [ - "Everyone", - "ExplicitAgeRanges", - "ExplicitAgeRangesAndGender", - "ExplicitGender", - "PossibleMothers", - "ArrivingAirTravellers", - "DepartingAirTravellers", - "ArrivingRoadTravellers", - "DepartingRoadTravellers", - "AllArrivingTravellers", - "AllDepartingTravellers", - "ExplicitDiseaseState", - "ExplicitIDs" - ], - "type": "enum" - }, - "Target_Gender": { - "default": "All", - "description": "Specifies the gender restriction for the intervention.", - "enum": [ - "All", - "Male", - "Female" - ], - "type": "enum" - }, - "Target_Residents_Only": { - "default": 0, - "description": "When set to true (1), the intervention is only distributed to individuals that began the simulation in the node (i.e. those that claim the node as their residence).", - "type": "bool" - }, - "Trigger_Condition_List": { - "default": [], - "description": "A list of events that trigger a health seeking intervention.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "Vector Enum" - }, - "class": "NodeLevelHealthTriggeredIVScaleUpSwitch" - }, - "NodePropertyValueChanger": { - "Daily_Probability": { - "default": 1, - "description": "The daily probability that an individual will move to the Target_Property_Value.", - "max": 1, - "min": 0, - "type": "float" - }, - "Disqualifying_Properties": { - "default": [], - "description": "A list of NodeProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Intervention_Name": { - "default": "NodePropertyValueChanger", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Maximum_Duration": { - "default": 3.402823466e+38, - "description": "The maximum amount of time individuals have to move to a new group. This timing works in conjunction with Daily_Probability.", - "max": 3.402823466e+38, - "min": -1, - "type": "float" - }, - "New_Property_Value": { - "default": "", - "description": "An optional NodeProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::NodeProperties.*.Property':'::NodeProperties.*.Values'" - }, - "Revert": { - "default": 0, - "description": "The number of days before an individual moves back to their original group.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Sim_Types": [ - "*" - ], - "Target_NP_Key_Value": { - "default": "", - "description": "The NodeProperty key:value pair, as defined in the demographics file, to assign to the node.", - "type": "Constrained String", - "value_source": "'::NodeProperties.*.Property':'::NodeProperties.*.Values'" - }, - "class": "NodePropertyValueChanger" - }, - "NodeRandomNumber": { - "Disqualifying_Properties": { - "default": [], - "description": "A list of NodeProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Intervention_Name": { - "default": "NodeRandomNumber", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "New_Property_Value": { - "default": "", - "description": "An optional NodeProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::NodeProperties.*.Property':'::NodeProperties.*.Values'" - }, - "Sim_Types": [ - "*" - ], - "Total_Numbers": { - "default": 0, - "description": "Random numbers to generate and discard.", - "max": 2147483647, - "min": 0, - "type": "integer" - }, - "class": "NodeRandomNumber" - }, - "Outbreak": { - "Clade": { - "default": 0, - "description": "The clade ID of the outbreak infection.", - "max": 9, - "min": 0, - "type": "integer" - }, - "Genome": { - "default": 0, - "description": "The genetic substrain ID of the outbreak infection.", - "max": 1677215, - "min": 0, - "type": "integer" - }, - "Import_Age": { - "default": 365, - "description": "The age (in days) of infected import cases.", - "max": 45625, - "min": 0, - "type": "float" - }, - "Import_Agent_MC_Weight": { - "default": 1, - "description": "Sampling weight of imported agents.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Import_Female_Prob": { - "default": 0.5, - "description": "Probability an imported agent will be female.", - "max": 1, - "min": 0, - "type": "float" - }, - "Number_Cases_Per_Node": { - "default": 1, - "description": "The number of new cases of Outbreak to import (per node).", - "max": 2147483647, - "min": 0, - "type": "integer" - }, - "Probability_Of_Infection": { - "default": 1, - "description": "Probability an imported agent will be infected.", - "max": 1, - "min": 0, - "type": "float" - }, - "Sim_Types": [ - "GENERIC_SIM", - "VECTOR_SIM", - "MALARIA_SIM", - "AIRBORNE_SIM", - "POLIO_SIM", - "TBHIV_SIM", - "STI_SIM", - "HIV_SIM", - "PY_SIM", - "TYPHOID_SIM", - "ENVIRONMENTAL_SIM", - "DENGUE_SIM" - ], - "class": "Outbreak" - }, - "TravelRestriction": { - "Disqualifying_Properties": { - "default": [], - "description": "A list of NodeProperty key:value pairs that cause an intervention to be aborted. Generally used to control the flow of health care access. For example, to prevent the same individual from accessing health care via two different routes at the same time.", - "type": "Dynamic String Set", - "value_source": "" - }, - "Dont_Allow_Duplicates": { - "default": 0, - "description": "If an individual's container has an intervention, set to true (1) to prevent them from receiving another copy of the intervention. Supported by all intervention classes.", - "type": "bool" - }, - "Duration": { - "default": 3.402823466e+38, - "description": "Time until the travel restrictions intervention expires.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Enable_Intervention_Replacement": { - "default": 0, - "depends-on": { - "Dont_Allow_Duplicates": 1 - }, - "description": "When enabled, distributing intervention will remove all other interventions of the same name on targeted individual.", - "type": "bool" - }, - "Intervention_Name": { - "default": "TravelRestriction", - "description": "The optional name used to refer to this intervention as a means to differentiate it from others that use the same class.", - "type": "string" - }, - "Multiplier_Inbound": { - "default": 1, - "description": "Multiplier on rate of all connections inbound to targeted node.", - "max": 1, - "min": 0, - "type": "float" - }, - "Multiplier_Outbound": { - "default": 1, - "description": "Multiplier on rate of all connections outbound from targeted node.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "New_Property_Value": { - "default": "", - "description": "An optional NodeProperty key:value pair that will be assigned when the intervention is distributed. Generally used to indicate the broad category of health care cascade to which an intervention belongs to prevent individuals from accessing care through multiple pathways.", - "type": "Constrained String", - "value_source": "'::NodeProperties.*.Property':'::NodeProperties.*.Values'" - }, - "Sim_Types": [ - "*" - ], - "class": "TravelRestriction" - } - } - }, - "idmAbstractType:NodeSet": { - "NodeSetAll": { - "class": "NodeSetAll" - }, - "NodeSetNodeList": { - "Node_List": { - "ascending": 0, - "default": [], - "description": "A comma-separated list of node IDs in which this event will occur.", - "max": 4294967295, - "min": 0, - "type": "Vector Uint32" - }, - "class": "NodeSetNodeList" - } - }, - "idmType:Action": { - "Event_To_Broadcast": { - "default": "NoTrigger", - "description": "The action event to occur when the specified trigger value in the Threshold parameter is met. At least one action must be defined for Event_To_Broadcast.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Event_Type": { - "default": "INDIVIDUAL", - "description": "The type of event to be broadcast.", - "enum": [ - "INDIVIDUAL", - "NODE", - "COORDINATOR" - ], - "type": "enum" - }, - "Threshold": { - "default": 0, - "description": "The threshold value that triggers the specified action for the Event_To_Broadcast parameter.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - } - }, - "idmType:AgeAndProbability": { - "Age": { - "default": 0, - "description": "An array of ages (in days). In IVCalendar, there is a list of actual interventions where the distribution is dependent on whether the individual's age matches the next date in the calendar.", - "max": 45625, - "min": 0, - "type": "float" - }, - "Probability": { - "default": 0, - "description": "The probability of an individual receiving the list of actual interventions at the corresponding age.", - "max": 1, - "min": 0, - "type": "float" - } - }, - "idmType:AgeRange": { - "Max": { - "default": 125, - "description": "This parameter determines the maximum age, in years for individuals to be included in the targeted population. An individual is considered in range if their age is greater than or equal to the minimum age and less than the maximum age, in floating point years of age.", - "max": 125, - "min": 0, - "type": "float" - }, - "Min": { - "default": 0, - "description": "This parameter determines the minimum age, in years for individuals to be included in the targeted population. An individual is considered in range if their age is greater than or equal to the minimum age and less than the maximum age, in floating point years of age.", - "max": 125, - "min": 0, - "type": "float" - } - }, - "idmType:IReport": { - "ReportHumanMigrationTracking": { - "class": "ReportHumanMigrationTracking" - }, - "ReportNodeDemographics": { - "IP_Key_To_Collect": { - "default": "", - "description": "Name of the key to add a column for.", - "type": "string" - }, - "Stratify_By_Gender": { - "default": 1, - "description": "1 (default) implies stratify by gender, 0 implies do not", - "type": "bool" - }, - "class": "ReportNodeDemographics" - }, - "ReportStrainTracking": { - "Ouput_Every_Timestep": { - "default": 0, - "description": "Write after every timestep.", - "type": "bool" - }, - "Report_Name": { - "default": "ReportStrainTracking.csv", - "description": "Output file name.", - "type": "string" - }, - "Time_End": { - "default": 3.402823466e+38, - "description": "No output after this timestep.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Time_Start": { - "default": 0, - "description": "No output prior to this timestep.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "class": "ReportStrainTracking" - } - }, - "idmType:IncidenceCounter": { - "Count_Events_For_Num_Timesteps": { - "default": 1, - "description": "TBD", - "max": 2147483647, - "min": 1, - "type": "integer" - }, - "Demographic_Coverage": { - "default": 1, - "description": "The fraction of individuals in the target demographic that will receive this intervention.", - "max": 1, - "min": 0, - "type": "float" - }, - "ID_List": { - "ascending": 0, - "default": [], - "depends-on": { - "Target_Demographic": "ExplicitIDs" - }, - "description": "List of individual IDs for intervention. Usually used in conjunction with event DB and embedded Python in-processing.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Max_Distributions_Per_Node": { - "default": 2147483647, - "description": "Maximum number of individuals in the target demographic that will receive this intervention.", - "max": 2147483647, - "min": 0, - "type": "integer" - }, - "Node_Property_Restrictions": { - "default": [], - "description": "A list of the NodeProperty key:value pairs, as defined in the demographics file, that nodes must have to be targeted by the intervention.", - "type": "idmType:PropertyRestriction" - }, - "Property_Restrictions": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "Dynamic String Set", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Property_Restrictions_Within_Node": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "idmType:PropertyRestriction" - }, - "Target_Age_Max": { - "default": 9.322804028e+35, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The upper end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Age_Min": { - "default": 0, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The lower end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Demographic": { - "default": "Everyone", - "description": "The target demographic group.", - "enum": [ - "Everyone", - "ExplicitAgeRanges", - "ExplicitAgeRangesAndGender", - "ExplicitGender", - "PossibleMothers", - "ArrivingAirTravellers", - "DepartingAirTravellers", - "ArrivingRoadTravellers", - "DepartingRoadTravellers", - "AllArrivingTravellers", - "AllDepartingTravellers", - "ExplicitDiseaseState", - "ExplicitIDs" - ], - "type": "enum" - }, - "Target_Gender": { - "default": "All", - "description": "Specifies the gender restriction for the intervention.", - "enum": [ - "All", - "Male", - "Female" - ], - "type": "enum" - }, - "Target_Residents_Only": { - "default": 0, - "description": "When set to true (1), the intervention is only distributed to individuals that began the simulation in the node (i.e. those that claim the node as their residence).", - "type": "bool" - }, - "Trigger_Condition_List": { - "default": [], - "description": "A list of events that will trigger an intervention.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "Vector Enum" - } - }, - "idmType:IncidenceCounterSurveillance": { - "Count_Events_For_Num_Timesteps": { - "default": 1, - "description": "TBD", - "max": 2147483647, - "min": 1, - "type": "integer" - }, - "Counter_Event_Type": { - "default": "INDIVIDUAL", - "description": "Type of events that can be included in **Trigger_Condition_List**. Possible values are: COORDINATOR, INDIVIDUAL, NODE.", - "enum": [ - "INDIVIDUAL", - "NODE", - "COORDINATOR" - ], - "type": "enum" - }, - "Counter_Period": { - "default": 1, - "description": "When **Counter_Type** is set to PERIODIC, this is the counter period (in days).", - "max": 1000, - "min": 1, - "type": "float" - }, - "Demographic_Coverage": { - "default": 1, - "description": "The fraction of individuals in the target demographic that will receive this intervention.", - "max": 1, - "min": 0, - "type": "float" - }, - "ID_List": { - "ascending": 0, - "default": [], - "depends-on": { - "Target_Demographic": "ExplicitIDs" - }, - "description": "List of individual IDs for intervention. Usually used in conjunction with event DB and embedded Python in-processing.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Max_Distributions_Per_Node": { - "default": 2147483647, - "description": "Maximum number of individuals in the target demographic that will receive this intervention.", - "max": 2147483647, - "min": 0, - "type": "integer" - }, - "Node_Property_Restrictions": { - "default": [], - "description": "A list of the NodeProperty key:value pairs, as defined in the demographics file, that nodes must have to be targeted by the intervention.", - "type": "idmType:PropertyRestriction" - }, - "Property_Restrictions": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "Dynamic String Set", - "value_source": "'::*.Individual_Properties.*.Property':'::*.Individual_Properties.*.Values'" - }, - "Property_Restrictions_Within_Node": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "idmType:PropertyRestriction" - }, - "Sim_Types": [ - "*" - ], - "Target_Age_Max": { - "default": 9.322804028e+35, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The upper end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Age_Min": { - "default": 0, - "depends-on": { - "Target_Demographic": "ExplicitAgeRanges,ExplicitAgeRangesAndGender" - }, - "description": "The lower end of ages targeted for an intervention, in years.", - "max": 9.322804028e+35, - "min": 0, - "type": "float" - }, - "Target_Demographic": { - "default": "Everyone", - "description": "The target demographic group.", - "enum": [ - "Everyone", - "ExplicitAgeRanges", - "ExplicitAgeRangesAndGender", - "ExplicitGender", - "PossibleMothers", - "ArrivingAirTravellers", - "DepartingAirTravellers", - "ArrivingRoadTravellers", - "DepartingRoadTravellers", - "AllArrivingTravellers", - "AllDepartingTravellers", - "ExplicitDiseaseState", - "ExplicitIDs" - ], - "type": "enum" - }, - "Target_Gender": { - "default": "All", - "description": "Specifies the gender restriction for the intervention.", - "enum": [ - "All", - "Male", - "Female" - ], - "type": "enum" - }, - "Target_Residents_Only": { - "default": 0, - "description": "When set to true (1), the intervention is only distributed to individuals that began the simulation in the node (i.e. those that claim the node as their residence).", - "type": "bool" - }, - "Trigger_Condition_List": { - "default": "NoTrigger", - "description": "The list of events to count. The list cannot be empty.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - } - }, - "idmType:InterpolatedValueMap": { - "Times": { - "ascending": 1, - "default": [], - "description": "An array of years.", - "max": 3.402823466e+38, - "min": 0, - "type": "Vector Float" - }, - "Values": { - "ascending": 0, - "default": [], - "description": "An array of values to match the defined Times.", - "max": 1, - "min": 0, - "type": "Vector Float" - } - }, - "idmType:NodeIdAndCoverage": { - "Coverage": { - "default": 0, - "description": "TBD", - "max": 1, - "min": 0, - "type": "float" - }, - "Node_Id": { - "default": 0, - "description": "TBD", - "max": 2147483647, - "min": 0, - "type": "integer" - } - }, - "idmType:PropertyRestriction": { - "Restrictions": { - "default": [], - "description": "", - "type": "Vector String" - } - }, - "idmType:Responder": { - "Action_List": { - "default": [], - "description": "List (array) of JSON objects, including the values specified in the following parameters: * Threshold, * Event_To_Broadcast.", - "item_type": "idmType:Action", - "type": "Vector idmType:Action" - }, - "Threshold_Type": { - "default": "COUNT", - "description": "Threshold type. Possible values are COUNT and PERCENTAGE.", - "enum": [ - "COUNT", - "PERCENTAGE", - "PERCENTAGE_EVENTS" - ], - "type": "enum" - } - }, - "idmType:ResponderSurveillance": { - "Action_List": { - "default": [], - "description": "List (array) of JSON objects, including the values specified in the following parameters: * Threshold, * Event_To_Broadcast.", - "item_type": "idmType:Action", - "type": "Vector idmType:Action" - }, - "Percentage_Events_To_Count": { - "default": [], - "depends-on": { - "Threshold_Type": "PERCENTAGE_EVENTS" - }, - "description": "TBD", - "type": "Vector String" - }, - "Responded_Event": { - "default": "NoTrigger", - "description": "A coordinator event, defined in **Custom_Coordinator_Events**, that is broadcast if **Responder** responded.", - "enum": [ - "NoTrigger", - "Births", - "EveryUpdate", - "EveryTimeStep", - "NewInfection", - "TBActivation", - "NewClinicalCase", - "NewSevereCase", - "DiseaseDeaths", - "OpportunisticInfectionDeath", - "NonDiseaseDeaths", - "TBActivationSmearPos", - "TBActivationSmearNeg", - "TBActivationExtrapulm", - "TBActivationPostRelapse", - "TBPendingRelapse", - "TBActivationPresymptomatic", - "TestPositiveOnSmear", - "ProviderOrdersTBTest", - "TBTestPositive", - "TBTestNegative", - "TBTestDefault", - "TBRestartHSB", - "TBMDRTestPositive", - "TBMDRTestNegative", - "TBMDRTestDefault", - "TBFailedDrugRegimen", - "TBRelapseAfterDrugRegimen", - "TBStartDrugRegimen", - "TBStopDrugRegimen", - "PropertyChange", - "STIDebut", - "StartedART", - "StoppedART", - "InterventionDisqualified", - "HIVNewlyDiagnosed", - "GaveBirth", - "Pregnant", - "Emigrating", - "Immigrating", - "HIVTestedNegative", - "HIVTestedPositive", - "HIVSymptomatic", - "HIVPreARTToART", - "HIVNonPreARTToART", - "TwelveWeeksPregnant", - "FourteenWeeksPregnant", - "SixWeeksOld", - "EighteenMonthsOld", - "STIPreEmigrating", - "STIPostImmigrating", - "STINewInfection", - "NewExternalHIVInfection", - "NodePropertyChange", - "HappyBirthday", - "EnteredRelationship", - "ExitedRelationship", - "FirstCoitalAct", - "NewlySymptomatic", - "SymptomaticCleared", - "ExposureComplete", - "SheddingComplete", - "PositiveResult", - "NegativeResult", - "Blackout", - "ReceivedTreatment", - "SixMonthsOld", - "OneYearOld", - "MonteCarloDeaths", - "InfectionCleared", - "GP_EVENT_000", - "GP_EVENT_001", - "GP_EVENT_002", - "GP_EVENT_003", - "GP_EVENT_004", - "GP_EVENT_005", - "GP_EVENT_006", - "GP_EVENT_007", - "GP_EVENT_008", - "GP_EVENT_009", - "GP_EVENT_010", - "GP_EVENT_011", - "GP_EVENT_012", - "GP_EVENT_013", - "GP_EVENT_014", - "GP_EVENT_015", - "GP_EVENT_016", - "GP_EVENT_017", - "GP_EVENT_018", - "GP_EVENT_019", - "GP_EVENT_020", - "GP_EVENT_021", - "GP_EVENT_022", - "GP_EVENT_023", - "GP_EVENT_024", - "GP_EVENT_025", - "GP_EVENT_026", - "GP_EVENT_027", - "GP_EVENT_028", - "GP_EVENT_029", - "GP_EVENT_030", - "GP_EVENT_031", - "GP_EVENT_032", - "GP_EVENT_033", - "GP_EVENT_034", - "GP_EVENT_035", - "GP_EVENT_036", - "GP_EVENT_037", - "GP_EVENT_038", - "GP_EVENT_039", - "GP_EVENT_040", - "GP_EVENT_041", - "GP_EVENT_042", - "GP_EVENT_043", - "GP_EVENT_044", - "GP_EVENT_045", - "GP_EVENT_046", - "GP_EVENT_047", - "GP_EVENT_048", - "GP_EVENT_049", - "GP_EVENT_050", - "GP_EVENT_051", - "GP_EVENT_052", - "GP_EVENT_053", - "GP_EVENT_054", - "GP_EVENT_055", - "GP_EVENT_056", - "GP_EVENT_057", - "GP_EVENT_058", - "GP_EVENT_059", - "GP_EVENT_060", - "GP_EVENT_061", - "GP_EVENT_062", - "GP_EVENT_063", - "GP_EVENT_064", - "GP_EVENT_065", - "GP_EVENT_066", - "GP_EVENT_067", - "GP_EVENT_068", - "GP_EVENT_069", - "GP_EVENT_070", - "GP_EVENT_071", - "GP_EVENT_072", - "GP_EVENT_073", - "GP_EVENT_074", - "GP_EVENT_075", - "GP_EVENT_076", - "GP_EVENT_077", - "GP_EVENT_078", - "GP_EVENT_079", - "GP_EVENT_080", - "GP_EVENT_081", - "GP_EVENT_082", - "GP_EVENT_083", - "GP_EVENT_084", - "GP_EVENT_085", - "GP_EVENT_086", - "GP_EVENT_087", - "GP_EVENT_088", - "GP_EVENT_089", - "GP_EVENT_090", - "GP_EVENT_091", - "GP_EVENT_092", - "GP_EVENT_093", - "GP_EVENT_094", - "GP_EVENT_095", - "GP_EVENT_096", - "GP_EVENT_097", - "GP_EVENT_098", - "GP_EVENT_099", - "NUM_EVENT_TRIGGERS" - ], - "type": "enum" - }, - "Threshold_Type": { - "default": "COUNT", - "description": "Threshold type. Possible values are COUNT and PERCENTAGE.", - "enum": [ - "COUNT", - "PERCENTAGE", - "PERCENTAGE_EVENTS" - ], - "type": "enum" - } - }, - "idmType:TBHIVDrugTypeParameters": { - "TB_Drug_Cure_Rate": { - "default": 1, - "description": "The daily probability of TB cure in an individual with drug-sensitive TB under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Cure_Rate_HIV": { - "default": 1, - "depends-on": { - "Enable_Coinfection": 1 - }, - "description": "The daily probability of active TB infection being cured in an HIV+ person under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Cure_Rate_MDR": { - "default": 1, - "depends-on": { - "Enable_Coinfection": 1 - }, - "description": "The daily probability of active MDR infection being cured in an HIV+ or HIV- person under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Inactivation_Rate": { - "default": 1, - "description": "The daily rate at which treatment with an anti-TB drug causes inactivation in an individual with drug-sensitive TB.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Inactivation_Rate_HIV": { - "default": 1, - "depends-on": { - "Enable_Coinfection": 1 - }, - "description": "The daily probability of active drug-sensitive TB infection becoming latent in an HIV+ person, not currently on ART, under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Inactivation_Rate_MDR": { - "default": 1, - "depends-on": { - "Enable_Coinfection": 1 - }, - "description": "The daily probability of active MDR infection becoming latent in an HIV+ or HIV- person under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Mortality_Rate": { - "default": 0, - "description": "The daily rate at which treatment with an anti-TB drug causes death in an individual with drug-sensitive TB.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Mortality_Rate_HIV": { - "default": 0, - "depends-on": { - "Enable_Coinfection": 1 - }, - "description": "The daily probability of death for HIV+ individual with drug sensitive active infection under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Mortality_Rate_MDR": { - "default": 0, - "depends-on": { - "Enable_Coinfection": 1 - }, - "description": "The daily probability of death for individual with MDR active infection under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Name": { - "default": "", - "description": "The unique name of the drug.", - "type": "string" - }, - "TB_Drug_Primary_Decay_Time_Constant": { - "default": 0, - "description": "The number of days before the efficacy of a specific anti-TB drug begins to decay.", - "max": 100000, - "min": 0, - "type": "float" - }, - "TB_Drug_Relapse_Rate": { - "default": 0, - "description": "The daily probability of TB inactivation and subsequent relapse in an individual with drug-sensitive TB under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Relapse_Rate_HIV": { - "default": 0, - "depends-on": { - "Enable_Coinfection": 1 - }, - "description": "The daily probability that a drug-sensitive active infection in an HIV+ individual not currently on ART will inactivate but subsequently relapse under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Relapse_Rate_MDR": { - "default": 0, - "depends-on": { - "Enable_Coinfection": 1 - }, - "description": "The daily probability that an active MDR-TB infection (in HIV+ or HIV-) will inactivate but subsequently relapse under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Resistance_Rate": { - "default": 0, - "description": "The daily probability that an individual with drug-sensitive TB will acquire MDR-TB under drug treatment. Only individuals who return to the latent state or fail can acquire MDR-TB.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Drug_Resistance_Rate_HIV": { - "default": 0, - "depends-on": { - "Enable_Coinfection": 1 - }, - "description": "The daily probability that an (HIV+) individual with drug-sensitive TB will acquire MDR-TB under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Reduced_Acquire": { - "default": 0, - "depends-on": { - "Enable_Coinfection": 1 - }, - "description": "Proportion reduction in acquisition of new TB infection under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - }, - "TB_Reduced_Transmit": { - "default": 0, - "depends-on": { - "Enable_Coinfection": 1 - }, - "description": "Proportion reduction in TB transmission under drug treatment.", - "max": 1, - "min": 0, - "type": "float" - } - }, - "idmType:TargetedDistribution": { - "Age_Ranges_Years": { - "default": [], - "description": "A list of age ranges that individuals must be in to qualify for an intervention. Each age range is a JSON object with a minimum and a maximum property.", - "item_type": "idmType:AgeRange", - "type": "Vector idmType:AgeRange" - }, - "End_Day": { - "default": 3.402823466e+38, - "description": "The day to stop distributing the intervention. No interventions are distributed on this day or going forward.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Num_Targeted": { - "ascending": 0, - "default": [], - "description": "The number of individuals to target with the intervention.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Num_Targeted_Females": { - "ascending": 0, - "default": [], - "description": "The number of female individuals to distribute interventions to during this time period.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Num_Targeted_Males": { - "ascending": 0, - "default": [], - "description": "The number of male individuals to distribute interventions to during this time period.", - "max": 2147483647, - "min": 0, - "type": "Vector Int" - }, - "Property_Restrictions_Within_Node": { - "default": [], - "description": "A list of the IndividualProperty key:value pairs, as defined in the demographics file, that individuals must have to be targeted by this intervention.", - "type": "idmType:PropertyRestriction" - }, - "Start_Day": { - "default": 0, - "description": "The day to start distributing the intervention.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - } - }, - "idmType:WaningEffect": { - "Age_Multiplier": { - "description": "Multiplier for current effect based on age in years; uses interpolated value map.", - "type": "idmType:InterpolatedValueMap" - }, - "Box_Duration": { - "default": 3.402823466e+38, - "description": "Time before decay or expiration of effect.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Box_Duration_Distribution": { - "default": "NOT_INITIALIZED", - "depends-on": { - "Enable_Box_Duration_Distribution": 1 - }, - "description": "Distribution to use when assigning box duration to each instance of the effect.", - "enum": [ - "NOT_INITIALIZED", - "GAUSSIAN_DISTRIBUTION", - "EXPONENTIAL_DISTRIBUTION", - "GAMMA_DISTRIBUTION" - ], - "type": "enum" - }, - "Box_Duration_Exponential": { - "default": -1, - "depends-on": { - "Box_Duration_Distribution": "EXPONENTIAL_DISTRIBUTION" - }, - "description": "The mean for an exponential distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Box_Duration_Gaussian_Mean": { - "default": -1, - "depends-on": { - "Box_Duration_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The mean for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Box_Duration_Gaussian_Std_Dev": { - "default": -1, - "depends-on": { - "Box_Duration_Distribution": "GAUSSIAN_DISTRIBUTION" - }, - "description": "The standard deviation for a Gaussian distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Box_Duration_Scale": { - "default": 1, - "depends-on": { - "Box_Duration_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The scale parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Box_Duration_Shape": { - "default": 1, - "depends-on": { - "Box_Duration_Distribution": "GAMMA_DISTRIBUTION" - }, - "description": "The shape parameter for the gamma distribution.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Decay_Time_Constant": { - "default": 0, - "description": "Time constant used for exponential decay of effect.", - "max": 3.402823466e+38, - "min": 0, - "type": "float" - }, - "Durability_Map": { - "description": "Multiplier for current effect based on time in days; uses interpolated value map.", - "type": "idmType:InterpolatedValueMap" - }, - "Enable_Box_Duration_Distribution": { - "default": 0, - "description": "Indicates if each instance should draw a box duration from a distribution; otherwise, box duration is the same for all instances.", - "type": "bool" - }, - "Enable_Initial_Effect_Distribution": { - "default": 0, - "description": "Indicates if each instance should draw an initial value from a beta distribution; otherwise, initial value is the same for all instances.", - "type": "bool" - }, - "Initial_Effect": { - "default": 0, - "description": "Initial value for effect. Value is the same for all agents.", - "max": 1, - "min": 0, - "type": "float" - }, - "Initial_Effect_Distribution_Alpha": { - "default": -1, - "depends-on": { - "Enable_Initial_Effect_Distribution": 1 - }, - "description": "Alpha parameter in beta distribution used to determine initial value for effect.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - }, - "Initial_Effect_Distribution_Beta": { - "default": -1, - "depends-on": { - "Enable_Initial_Effect_Distribution": 1 - }, - "description": "Beta parameter in beta distribution used to determine initial value for effect.", - "max": 3.402823466e+38, - "min": 1.175494351e-38, - "type": "float" - } - } - }, - "interventions": { - "Events": [ - "idmAbstractType:CampaignEvent" - ], - "Use_Defaults": { - "default": 0, - "description": "Set to 1 to apply default values to unspecified parameters.", - "type": "bool" - } - }, - "reports": { - "Reports": [ - "idmType:IReport" - ], - "Use_Defaults": { - "default": 0, - "description": "Set to 1 to apply default values to unspecified parameters.", - "type": "bool" - } - } -} \ No newline at end of file diff --git a/local_python/emod_exp.py b/local_python/emod_exp.py index 99786020..a2b51bc6 100644 --- a/local_python/emod_exp.py +++ b/local_python/emod_exp.py @@ -4,6 +4,7 @@ import json import os +import subprocess from idmtools.core.platform_factory import Platform from idmtools.assets import Asset, AssetCollection @@ -20,7 +21,8 @@ EXP_V, EXP_NAME, NUM_SIMS, \ COMPS_ID_FILE, LOCAL_EXP_ROOT, \ LOCAL_EXP_DIR, DEFAULT_OS, \ - I_FILE, I_FILE_FMT + I_FILE, I_FILE_FMT, \ + LOCAL_DOCK_PACK # ***************************************************************************** @@ -76,10 +78,20 @@ def exp_from_def_file(path_param_dict, path_python, path_exe, path_data, task_obj.common_assets.add_asset(param_asset) if (run_local): + # Only require emod-generic if local sim + from emod_generic import bootstrap + + # Record CWD + cwd_bak = os.getcwd() + # Executable and schema from local directory f_dir = os.path.dirname(os.path.abspath(__file__)) path_assets = os.path.join(f_dir, 'container_assets') + bootstrap.setup(local_dir=path_assets) task_obj.common_assets.add_directory(path_assets) + + # Restore CWD + os.chdir(cwd_bak) else: # Environment on COMPS task_obj.set_sif(os.path.join(path_exe, ID_ENV), plat_obj) @@ -160,9 +172,9 @@ def start_exp(path_python, path_data, path_exp_def, # Prepare the platform if (run_local): - # Requires emod_env in Docker Desktop + update_docker_image() plat_obj = Platform(type='Container', job_directory=LOCAL_EXP_ROOT, - docker_image='emod_env:latest') + docker_image=LOCAL_DOCK_PACK) else: p_str = ['Lowest', 'BelowNormal', 'Normal', 'AboveNormal', 'Highest'] p_val = p_str[priority] @@ -189,10 +201,10 @@ def start_exp(path_python, path_data, path_exp_def, if (run_local): # Write path sims cpath0 = plat_obj.get_container_directory(exp_obj) - cpath1 = os.path.split(cpath0) - cpath2 = os.path.split(cpath1[0]) + cpath1 = os.path.split(cpath0)[-1] + with open(LOCAL_EXP_DIR, 'w') as fid01: - fid01.write(os.path.join(LOCAL_EXP_ROOT, cpath2[-1], cpath1[-1])) + fid01.write(os.path.join(LOCAL_EXP_ROOT, cpath1)) else: # Save experiment id to file exp_obj.to_id_file(COMPS_ID_FILE) @@ -202,3 +214,27 @@ def start_exp(path_python, path_data, path_exp_def, return None # ***************************************************************************** + + +def update_docker_image(): + """ + Updates the EMOD-Hub Ubuntu runtime image to include emod-api + + Args: + + Returns: + + """ + + # Path to Dockerfile + f_dir = os.path.dirname(os.path.abspath(__file__)) + dockerfile = os.path.join(f_dir, 'container_assets', 'Dockerfile') + + # Build image locally + cmd = ['docker', 'build', '-t', LOCAL_DOCK_PACK, '-f', dockerfile, '.'] + p = subprocess.Popen(cmd) + p.wait() + + return None + +# ***************************************************************************** diff --git a/local_python/py_assets_common/emod_analysis.py b/local_python/py_assets_common/emod_analysis.py index bdc04e17..befbd3e1 100644 --- a/local_python/py_assets_common/emod_analysis.py +++ b/local_python/py_assets_common/emod_analysis.py @@ -11,66 +11,136 @@ # ***************************************************************************** -def norpois_vec(yobs, ysim, yscal=1.0): +def norpois_vec(yobs: list[float], ysim: list[float], + mval: float = 0.0, bval: float = 0.0): + ''' + Poisson-based estimation of log-liklihood for a timeseries. The vector of + observed values is used as the occurances (k) and the vector of simulated + values is used as the rates (lam). Stirling's approximation is applied to + the factorial term: + ln P = k*ln(lam/k) - lam + k - 0.5*ln(2*pi*k) + + A small positive value is added to the simulated rates so they are never + exactly zero. The adjusted rates are then modified by a scale factor + that represents the case to infection ratio. Scale factor adjustements + have an `exp(m*x + b)` form that allows for changes over time. The values + in the timeseries are assumed to be equally spaced, so the `x` value in + the scale factor is the index of the value in the vector. + lam = (ysim + delt)*exp(mval*x + bval) + k = yobs + + First and second derivatives of probability with respect to `mval` and + `bval` coefficients in the scale factor are also calculated. + + Args: + yobs: List of observed timeseries values. + + ysim: List of simulated timeseries values. May be longer than + the list of observed values. + + mval: Linear parameter in scale factor calculations. + + bval: Constant parameter in scale factor calculations. + + Returns: + Ltot (float): Calculated log-liklihood estimator. + + dval ([float, float]): Estimated Newton-step to adjust [mval, bval] + parameters when maximizing log-liklihood. + ''' + + # L - liklihood; G - gradient; H - Hessian + Ltot = 0.0 + Gtot = np.zeros((2, 1)) + Htot = np.zeros((2, 2)) + delt = 0.01 # Small positive value (FLT_EPS is way too small) + + # Each timeseries value is evaluated serially + for k1 in range(len(yobs)): + yobs0 = float(yobs[k1]) + ysim0 = float(ysim[k1]) + delt + rfac = np.exp(mval*k1 + bval) - lliktot = 0.0 - Gtot = 0.0 - Htot = 0.0 - mlam = 0.1 + if (yobs0 > 0): + Ltot += yobs0*np.log(ysim0*rfac/yobs0) - ysim0*rfac + \ + yobs0 - 0.5*np.log(2.0*np.pi*yobs0) - for k1 in range(len(yobs)): - yobsval = float(yobs[k1]) - ysimval = float(ysim[k1]) - llik = 0.0 - G = 0.0 - H = 0.0 - - if (yobsval > 0): - llik = yobsval*np.log((yscal*ysimval + mlam)/yobsval) \ - - yscal*ysimval - mlam + yobsval \ - - 0.5*np.log(2.0*np.pi*yobsval) - G = yobsval - ysimval*yscal - H = - ysimval*yscal - elif (yobsval == 0): - llik = -ysimval*yscal - mlam - G = -ysimval*yscal - H = -ysimval*yscal - - lliktot = lliktot + llik - Gtot = Gtot + G - Htot = Htot + H - - if (Htot != 0.0): - sstptot = Gtot/Htot - else: - sstptot = 0.0 - - return (lliktot, sstptot) + Gtot[0, 0] += yobs0*k1 - ysim0*rfac*k1 + Gtot[1, 0] += yobs0 - ysim0*rfac + + Htot[0, 0] += -ysim0*rfac*k1*k1 + Htot[1, 0] += -ysim0*rfac*k1 + Htot[0, 1] += -ysim0*rfac*k1 + Htot[1, 1] += -ysim0*rfac + + elif (yobs0 == 0): + Ltot += -ysim0*rfac + + Gtot[0, 0] += -ysim0*rfac*k1 + Gtot[1, 0] += -ysim0*rfac + + Htot[0, 0] += -ysim0*rfac*k1*k1 + Htot[1, 0] += -ysim0*rfac*k1 + Htot[0, 1] += -ysim0*rfac*k1 + Htot[1, 1] += -ysim0*rfac + + dval = np.linalg.solve(Htot, Gtot) + + return (Ltot, dval) # ***************************************************************************** -def norpois_opt(yobs, ysim): +def norpois_opt(yobs: list[float], ysim: list[float]): + ''' + Preferred entry point for `norpois_vec` function, which calculates a + Poisson-based estimation of log-liklihood for a timeseries. This function + determines coefficients in the scale factor by maximizing log-liklihood. - lyscal = 0.0 + Maximum liklihood scale factor coefficients may result in unreasonable + values (i.e., reporting rates greater than 100%). Unreasonable scaling + coefficients occur when simulation outcomes are a very poor match to + observed values. - while (True): - (lliktot, sstptot) = norpois_vec(yobs, ysim, np.exp(lyscal)) + Args: + yobs: List of observed timeseries values. - # Step size control - if (abs(sstptot) > 5.0): - sstptot = np.sign(sstptot)*5.0 + ysim: List of simulated timeseries values. May be longer than + the list of observed values. - lyscal = lyscal - sstptot - if (abs(sstptot) < 1.0e-4): + Returns: + Ltot (float): Calculated log-liklihood estimator. + + pvec ([float, float]): The [mval, bval] parameters that maximize the + log-liklihood. + ''' + + # May have more simulated outcomes than observed outcomes + if (len(ysim) < len(yobs)): + raise ValueError("Simulation vector is too short.") + + x = np.zeros((2, 1)) + + while (True): + (Ltot, dval) = norpois_vec(yobs, ysim, x[0, 0], x[1, 0]) + + # Convergence check + dmag = np.max(np.abs(dval)) + if (dmag < 1.0e-5): break - return (lliktot, np.exp(lyscal)) + x = x - dval + + pvec = [float(x[0, 0]), float(x[1, 0])] + + return (Ltot, pvec) # ***************************************************************************** def gauss_vec(dmu2, sig2, yscal=1.0): + ''' + ''' llik = -0.5*np.sum(dmu2/(sig2*yscal*yscal) + np.log(2*np.pi*sig2*yscal*yscal)) @@ -83,6 +153,8 @@ def gauss_vec(dmu2, sig2, yscal=1.0): def gauss_opt(yobs, ysim): + ''' + ''' k = np.array(yobs[0]) N = np.array(yobs[1]) @@ -112,6 +184,8 @@ def gauss_opt(yobs, ysim): def binom_vec(yobs, ysim): + ''' + ''' lliktot = 0 @@ -148,6 +222,8 @@ def binom_vec(yobs, ysim): def multinom_vec(yobs, ysim): + ''' + ''' lliktot = 0.0 mlam = 0.1 diff --git a/local_python/py_assets_common/emod_camp_events.py b/local_python/py_assets_common/emod_camp_events.py index 9faf608b..e403aa3c 100644 --- a/local_python/py_assets_common/emod_camp_events.py +++ b/local_python/py_assets_common/emod_camp_events.py @@ -4,7 +4,7 @@ from emod_api import schema_to_class as s2c -from emod_constants import SPATH, YR_DAYS +from emod_constants import SPATH, YR_DAYS, DIST_CONST, DIST_UNIFR, DIST_GAUSS # ***************************************************************************** @@ -200,14 +200,14 @@ def ce_inf_force(schjson, node_list, step_init, step_width, # ***************************************************************************** -def ce_inf_mod(node_list, +def ce_inf_mod(schjson, node_list, start_day=0.0, dt_days=365.0, mult_val=1.0): # Infectivity multiplier - camp_event = s2c.get_class_with_defaults(CE, SPATH) - camp_nodes = s2c.get_class_with_defaults(NSNL, SPATH) - camp_coord = s2c.get_class_with_defaults(SEC, SPATH) - camp_iv = s2c.get_class_with_defaults('NodeInfectivityMult', SPATH) + camp_event = s2c.get_class_with_defaults(CE, schema_json=schjson) + camp_nodes = s2c.get_class_with_defaults(NSNL, schema_json=schjson) + camp_coord = s2c.get_class_with_defaults(SEC, schema_json=schjson) + camp_iv = s2c.get_class_with_defaults(NIM, schema_json=schjson) camp_event.Event_Coordinator_Config = camp_coord camp_event.Start_Day = start_day @@ -267,7 +267,7 @@ def ce_RI(schjson, node_list, camp_iv02.Intervention_List = [camp_iv03] camp_iv03.Actual_IndividualIntervention_Configs = [camp_iv04] - camp_iv03.Delay_Period_Distribution = "GAUSSIAN_DISTRIBUTION" + camp_iv03.Delay_Period_Distribution = DIST_GAUSS camp_iv03.Delay_Period_Gaussian_Mean = age_one camp_iv03.Delay_Period_Gaussian_Std_Dev = age_std @@ -287,7 +287,7 @@ def ce_RI(schjson, node_list, camp_iv05.Actual_IndividualIntervention_Configs = [camp_iv06] camp_iv05.Coverage = frac_two - camp_iv05.Delay_Period_Distribution = "GAUSSIAN_DISTRIBUTION" + camp_iv05.Delay_Period_Distribution = DIST_GAUSS camp_iv05.Delay_Period_Gaussian_Mean = age_two camp_iv05.Delay_Period_Gaussian_Std_Dev = age_std @@ -336,7 +336,7 @@ def ce_OPV_RI(node_list, camp_iv02.Intervention_List = [camp_iv03] camp_iv03.Actual_IndividualIntervention_Configs = [camp_iv04] - camp_iv03.Delay_Period_Distribution = "GAUSSIAN_DISTRIBUTION" + camp_iv03.Delay_Period_Distribution = DIST_GAUSS camp_iv03.Delay_Period_Gaussian_Mean = age_one camp_iv03.Delay_Period_Gaussian_Std_Dev = age_std @@ -376,7 +376,7 @@ def ce_SIA(schjson, node_list, camp_iv01.Actual_IndividualIntervention_Configs = [camp_iv02] camp_iv01.Cost_To_Consumer = 1.0 - camp_iv01.Delay_Period_Distribution = "UNIFORM_DISTRIBUTION" + camp_iv01.Delay_Period_Distribution = DIST_UNIFR camp_iv01.Delay_Period_Min = 0.0 camp_iv01.Delay_Period_Max = 14.0 @@ -482,7 +482,7 @@ def ce_quarantine(node_list, trigger, camp_coord.Max_Distributed_Per_Day = 1e9 camp_coord.Days_Between_Shipments = 1000 camp_coord.Amount_In_Shipment = 0 - camp_coord.Initial_Amount_Distribution = 'CONSTANT_DISTRIBUTION' + camp_coord.Initial_Amount_Distribution = DIST_CONST camp_coord.Initial_Amount_Constant = 1e9 camp_iv.Vaccine_Take = coverage @@ -543,9 +543,9 @@ def ce_visit_nodes(node_orig, node_dest, camp_coord.Property_Restrictions_Within_Node = only_group camp_iv.NodeID_To_Migrate_To = node_dest - camp_iv.Duration_Before_Leaving_Distribution = 'CONSTANT_DISTRIBUTION' + camp_iv.Duration_Before_Leaving_Distribution = DIST_CONST camp_iv.Duration_Before_Leaving_Constant = 0 - camp_iv.Duration_At_Node_Distribution = 'CONSTANT_DISTRIBUTION' + camp_iv.Duration_At_Node_Distribution = DIST_CONST camp_iv.Duration_At_Node_Constant = duration return camp_event diff --git a/local_python/py_assets_common/emod_config_func.py b/local_python/py_assets_common/emod_config_func.py new file mode 100644 index 00000000..de69df25 --- /dev/null +++ b/local_python/py_assets_common/emod_config_func.py @@ -0,0 +1,38 @@ +# ***************************************************************************** +# +# ***************************************************************************** + +import numpy as np + +# ***************************************************************************** + + +def grav_coeff_guess(exp_vals: list[float], ln_offset: list[float] = None): + """ + Helper function to calculate approximate gravity model coefficients for a + list of gravity model exponents. Fit using empirical correlation. Ought to + be tuned with data; should be adequate as an initial guess. + + Args: + exp_vals (list[float]): List of gravity model exponent values. + + ln_offset (list[float]): List of offsets for each exponent. Adjusts + the calculated constant based on a log-scale offset. + + Returns: + (list[float]): Estimated gravity model coffefficient for each gravity + model exponent provided in input. + """ + + if (np.min(exp_vals) < 0.0 or np.max(exp_vals) > 8.0): + raise Exception('Network exponent out of range.') + + x_ref = np.array([0, 0.25, 0.5, 0.75, 1, 2, 3, 4, 5, 6, 7, 8]) + y_ref = np.array([-2.794, -1.298, 0.155, 1.528, 2.797, 6.924, + 9.774, 12.22, 14.44, 16.56, 18.65, 20.75]) + + ln_coeffs = np.interp(exp_vals, x_ref, y_ref) + np.array(ln_offset) + + return (np.exp(ln_coeffs)).tolist() + +# ***************************************************************************** diff --git a/local_python/py_assets_common/emod_constants.py b/local_python/py_assets_common/emod_constants.py index a819c6bd..222e943d 100644 --- a/local_python/py_assets_common/emod_constants.py +++ b/local_python/py_assets_common/emod_constants.py @@ -17,6 +17,7 @@ LOCAL_EXP_ROOT = 'docker_suites' LOCAL_EXP_DIR = 'LOCAL_EXP_PATH.txt' +LOCAL_DOCK_PACK = 'ghcr.io/emod-hub/emod-ubuntu-runtime-api:latest' PY_PATH = r'python3' @@ -62,9 +63,13 @@ DEMOG_IRS = 'InfectivityReservoirSize' +DIST_NONE = 'DISTRIBUTION_OFF' DIST_CMPLX = 'DISTRIBUTION_COMPLEX' +DIST_CONST = 'CONSTANT_DISTRIBUTION' +DIST_UNIFR = 'UNIFORM_DISTRIBUTION' DIST_GAMMA = 'GAMMA_DISTRIBUTION' DIST_GAUSS = 'GAUSSIAN_DISTRIBUTION' +DIST_LOGNR = 'LOG_NORMAL_DISTRIBUTION' SQL_TIME = 0 SQL_NODE = 2 diff --git a/mkdocs.yml b/mkdocs.yml index 48ef63fa..ec253fd4 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -38,11 +38,9 @@ nav: - examples/model_covid01.md - examples/model_demographics_wpp01.md - examples/model_demographics01.md - - examples/model_measles01.md + - examples/model_measles.md - examples/model_measles_cod01.md - examples/model_measles_gha01.md - - examples/model_measles_nga01.md - - examples/model_measles_nga02.md - examples/model_network01.md - examples/model_polio_nga01.md - examples/model_rubella01.md diff --git a/model_covariance01/Assets/python/builder_config.py b/model_covariance01/Assets/python/builder_config.py index 7b1a59da..8ce90992 100644 --- a/model_covariance01/Assets/python/builder_config.py +++ b/model_covariance01/Assets/python/builder_config.py @@ -8,7 +8,8 @@ import numpy as np -from emod_constants import CAMP_FILE, REPORTS_FILE +from emod_constants import CAMP_FILE, REPORTS_FILE, \ + DIST_GAUSS, DIST_NONE, DIST_LOGNR # ***************************************************************************** @@ -41,15 +42,15 @@ def update_config_obj(config): inf_ln_sig = np.sqrt(np.log(inf_ln_var/inf_ln_mean/inf_ln_mean+1.0)) inf_ln_mu = np.log(inf_ln_mean) - 0.5*inf_ln_sig*inf_ln_sig - cp.Base_Infectivity_Distribution = 'LOG_NORMAL_DISTRIBUTION' + cp.Base_Infectivity_Distribution = DIST_LOGNR cp.Base_Infectivity_Log_Normal_Mu = inf_ln_mu cp.Base_Infectivity_Log_Normal_Sigma = inf_ln_sig - cp.Incubation_Period_Distribution = 'GAUSSIAN_DISTRIBUTION' + cp.Incubation_Period_Distribution = DIST_GAUSS cp.Incubation_Period_Gaussian_Mean = 3.0 cp.Incubation_Period_Gaussian_Std_Dev = 0.8 - cp.Infectious_Period_Distribution = 'GAUSSIAN_DISTRIBUTION' + cp.Infectious_Period_Distribution = DIST_GAUSS cp.Infectious_Period_Gaussian_Mean = inf_prd_mean cp.Infectious_Period_Gaussian_Std_Dev = 0.8 @@ -74,7 +75,7 @@ def update_config_obj(config): # Demographics cp.Enable_Demographics_Builtin = 0 - cp.Age_Initialization_Distribution_Type = 'DISTRIBUTION_OFF' + cp.Age_Initialization_Distribution_Type = DIST_NONE cp.Enable_Vital_Dynamics = 0 cp.Enable_Acquisition_Heterogeneity = 1 cp.Demographics_Filenames = gdata.demog_files diff --git a/model_demographics_wpp01/Assets/python/builder_config.py b/model_demographics_wpp01/Assets/python/builder_config.py index b47a42cb..a55ea6d0 100644 --- a/model_demographics_wpp01/Assets/python/builder_config.py +++ b/model_demographics_wpp01/Assets/python/builder_config.py @@ -6,7 +6,8 @@ import global_data as gdata -from emod_constants import CAMP_FILE, REPORTS_FILE, BASE_YEAR +from emod_constants import CAMP_FILE, REPORTS_FILE, BASE_YEAR, \ + DIST_CONST, DIST_CMPLX # ***************************************************************************** @@ -33,13 +34,13 @@ def update_config_obj(config): cp.Wall_Time_Maximum_In_Minutes = gdata.max_clock # Intrahost - cp.Base_Infectivity_Distribution = 'CONSTANT_DISTRIBUTION' + cp.Base_Infectivity_Distribution = DIST_CONST cp.Base_Infectivity_Constant = 0.0 - cp.Incubation_Period_Distribution = 'CONSTANT_DISTRIBUTION' + cp.Incubation_Period_Distribution = DIST_CONST cp.Incubation_Period_Constant = 0.0 - cp.Infectious_Period_Distribution = 'CONSTANT_DISTRIBUTION' + cp.Infectious_Period_Distribution = DIST_CONST cp.Infectious_Period_Constant = 0.0 cp.Symptomatic_Infectious_Offset = 0.0 @@ -70,7 +71,7 @@ def update_config_obj(config): cp.Enable_Birth = 1 cp.Birth_Rate_Dependence = 'POPULATION_DEP_RATE' cp.Enable_Aging = 1 - cp.Age_Initialization_Distribution_Type = 'DISTRIBUTION_COMPLEX' + cp.Age_Initialization_Distribution_Type = DIST_CMPLX cp.Enable_Natural_Mortality = 1 enum_str = 'NONDISEASE_MORTALITY_BY_YEAR_AND_AGE_FOR_EACH_GENDER' cp.Death_Rate_Dependence = enum_str diff --git a/model_measles01/Assets/data/pop_dat_AGO.csv b/model_measles/Assets/data/pop_dat_AGO.csv similarity index 100% rename from model_measles01/Assets/data/pop_dat_AGO.csv rename to model_measles/Assets/data/pop_dat_AGO.csv diff --git a/model_measles01/Assets/data/pop_dat_CAF.csv b/model_measles/Assets/data/pop_dat_CAF.csv similarity index 100% rename from model_measles01/Assets/data/pop_dat_CAF.csv rename to model_measles/Assets/data/pop_dat_CAF.csv diff --git a/model_measles01/Assets/data/pop_dat_CMR.csv b/model_measles/Assets/data/pop_dat_CMR.csv similarity index 100% rename from model_measles01/Assets/data/pop_dat_CMR.csv rename to model_measles/Assets/data/pop_dat_CMR.csv diff --git a/model_measles01/Assets/data/pop_dat_COD.csv b/model_measles/Assets/data/pop_dat_COD.csv similarity index 100% rename from model_measles01/Assets/data/pop_dat_COD.csv rename to model_measles/Assets/data/pop_dat_COD.csv diff --git a/model_measles01/Assets/data/pop_dat_GHA.csv b/model_measles/Assets/data/pop_dat_GHA.csv similarity index 100% rename from model_measles01/Assets/data/pop_dat_GHA.csv rename to model_measles/Assets/data/pop_dat_GHA.csv diff --git a/model_measles01/Assets/data/pop_dat_GNB.csv b/model_measles/Assets/data/pop_dat_GNB.csv similarity index 100% rename from model_measles01/Assets/data/pop_dat_GNB.csv rename to model_measles/Assets/data/pop_dat_GNB.csv diff --git a/model_measles01/Assets/data/pop_dat_SEN.csv b/model_measles/Assets/data/pop_dat_SEN.csv similarity index 100% rename from model_measles01/Assets/data/pop_dat_SEN.csv rename to model_measles/Assets/data/pop_dat_SEN.csv diff --git a/model_measles01/Assets/python/builder_campaign.py b/model_measles/Assets/python/builder_campaign.py similarity index 96% rename from model_measles01/Assets/python/builder_campaign.py rename to model_measles/Assets/python/builder_campaign.py index 7ea88f31..dcfeb28f 100644 --- a/model_measles01/Assets/python/builder_campaign.py +++ b/model_measles/Assets/python/builder_campaign.py @@ -50,7 +50,8 @@ def campaignBuilder(): # R0 seasonality start_day = 365.0*(gdata.start_year-BASE_YEAR) camp_event = ce_inf_force(sch_data, ALL_NODES, 15.0, 60.0, - step_size=1.30, dt=gdata.t_step_days) + step_size=1.30, start_day=start_day, + dt=gdata.t_step_days) camp_module.add(camp_event) # RI diff --git a/model_measles01/Assets/python/builder_config.py b/model_measles/Assets/python/builder_config.py similarity index 86% rename from model_measles01/Assets/python/builder_config.py rename to model_measles/Assets/python/builder_config.py index 66bca3f3..4fb4178e 100644 --- a/model_measles01/Assets/python/builder_config.py +++ b/model_measles/Assets/python/builder_config.py @@ -6,7 +6,8 @@ import global_data as gdata -from emod_constants import CAMP_FILE, REPORTS_FILE, BASE_YEAR +from emod_constants import CAMP_FILE, REPORTS_FILE, BASE_YEAR, \ + DIST_CMPLX, DIST_GAMMA, DIST_GAUSS # ***************************************************************************** @@ -33,15 +34,15 @@ def update_config_obj(config): cp.Wall_Time_Maximum_In_Minutes = gdata.max_clock # Intrahost - cp.Base_Infectivity_Distribution = 'GAMMA_DISTRIBUTION' + cp.Base_Infectivity_Distribution = DIST_GAMMA cp.Base_Infectivity_Scale = R0/gdata.inf_prd_mean cp.Base_Infectivity_Shape = 1.0 - cp.Incubation_Period_Distribution = 'GAMMA_DISTRIBUTION' + cp.Incubation_Period_Distribution = DIST_GAMMA cp.Incubation_Period_Scale = 1.0 cp.Incubation_Period_Shape = 3.5 - cp.Infectious_Period_Distribution = 'GAUSSIAN_DISTRIBUTION' + cp.Infectious_Period_Distribution = DIST_GAUSS cp.Infectious_Period_Gaussian_Mean = gdata.inf_prd_mean cp.Infectious_Period_Gaussian_Std_Dev = 2.0 @@ -63,13 +64,12 @@ def update_config_obj(config): cp.Maternal_Acquire_Config.Initial_Effect = MAT_FACTOR cp.Maternal_Acquire_Config.Enable_Box_Duration_Distribution = 1 - enum_str = 'GAUSSIAN_DISTRIBUTION' - cp.Maternal_Acquire_Config.Box_Duration_Distribution = enum_str + cp.Maternal_Acquire_Config.Box_Duration_Distribution = DIST_GAUSS cp.Maternal_Acquire_Config.Box_Duration_Gaussian_Mean = 120.0 cp.Maternal_Acquire_Config.Box_Duration_Gaussian_Std_Dev = 67.0 cp.Enable_Initial_Susceptibility_Distribution = 1 - cp.Susceptibility_Initialization_Distribution_Type = 'DISTRIBUTION_COMPLEX' + cp.Susceptibility_Initialization_Distribution_Type = DIST_CMPLX # Interventions cp.Enable_Interventions = 1 @@ -92,11 +92,10 @@ def update_config_obj(config): cp.Enable_Demographics_Builtin = 0 cp.Enable_Vital_Dynamics = 1 - cp.Enable_Birth = 1 cp.Birth_Rate_Dependence = 'POPULATION_DEP_RATE' cp.Enable_Aging = 1 - cp.Age_Initialization_Distribution_Type = 'DISTRIBUTION_COMPLEX' + cp.Age_Initialization_Distribution_Type = DIST_CMPLX cp.Enable_Natural_Mortality = 1 enum_str = 'NONDISEASE_MORTALITY_BY_YEAR_AND_AGE_FOR_EACH_GENDER' cp.Death_Rate_Dependence = enum_str diff --git a/model_measles01/Assets/python/builder_demographics.py b/model_measles/Assets/python/builder_demographics.py similarity index 100% rename from model_measles01/Assets/python/builder_demographics.py rename to model_measles/Assets/python/builder_demographics.py diff --git a/model_measles01/Assets/python/builder_reports.py b/model_measles/Assets/python/builder_reports.py similarity index 100% rename from model_measles01/Assets/python/builder_reports.py rename to model_measles/Assets/python/builder_reports.py diff --git a/model_measles01/Assets/python/dtk_in_process.py b/model_measles/Assets/python/dtk_in_process.py similarity index 100% rename from model_measles01/Assets/python/dtk_in_process.py rename to model_measles/Assets/python/dtk_in_process.py diff --git a/model_measles01/Assets/python/dtk_post_process.py b/model_measles/Assets/python/dtk_post_process.py similarity index 100% rename from model_measles01/Assets/python/dtk_post_process.py rename to model_measles/Assets/python/dtk_post_process.py diff --git a/model_measles01/Assets/python/dtk_pre_process.py b/model_measles/Assets/python/dtk_pre_process.py similarity index 100% rename from model_measles01/Assets/python/dtk_pre_process.py rename to model_measles/Assets/python/dtk_pre_process.py diff --git a/model_measles01/Assets/python/global_data.py b/model_measles/Assets/python/global_data.py similarity index 100% rename from model_measles01/Assets/python/global_data.py rename to model_measles/Assets/python/global_data.py diff --git a/model_measles01/experiment_surf_base/COMPS_ID.id b/model_measles/experiment_surf_base/COMPS_ID.id similarity index 100% rename from model_measles01/experiment_surf_base/COMPS_ID.id rename to model_measles/experiment_surf_base/COMPS_ID.id diff --git a/model_measles01/experiment_surf_base/make01_param_dict.py b/model_measles/experiment_surf_base/make01_param_dict.py similarity index 100% rename from model_measles01/experiment_surf_base/make01_param_dict.py rename to model_measles/experiment_surf_base/make01_param_dict.py diff --git a/model_measles01/experiment_surf_base/make02_launch_sims.py b/model_measles/experiment_surf_base/make02_launch_sims.py similarity index 100% rename from model_measles01/experiment_surf_base/make02_launch_sims.py rename to model_measles/experiment_surf_base/make02_launch_sims.py diff --git a/model_measles01/experiment_surf_base/make03_pool_brick.py b/model_measles/experiment_surf_base/make03_pool_brick.py similarity index 100% rename from model_measles01/experiment_surf_base/make03_pool_brick.py rename to model_measles/experiment_surf_base/make03_pool_brick.py diff --git a/model_measles01/experiment_surf_ideal/COMPS_ID.id b/model_measles/experiment_surf_ideal/COMPS_ID.id similarity index 100% rename from model_measles01/experiment_surf_ideal/COMPS_ID.id rename to model_measles/experiment_surf_ideal/COMPS_ID.id diff --git a/model_measles01/experiment_surf_ideal/make01_param_dict.py b/model_measles/experiment_surf_ideal/make01_param_dict.py similarity index 100% rename from model_measles01/experiment_surf_ideal/make01_param_dict.py rename to model_measles/experiment_surf_ideal/make01_param_dict.py diff --git a/model_measles01/experiment_surf_ideal/make02_launch_sims.py b/model_measles/experiment_surf_ideal/make02_launch_sims.py similarity index 100% rename from model_measles01/experiment_surf_ideal/make02_launch_sims.py rename to model_measles/experiment_surf_ideal/make02_launch_sims.py diff --git a/model_measles01/experiment_surf_ideal/make03_pool_brick.py b/model_measles/experiment_surf_ideal/make03_pool_brick.py similarity index 100% rename from model_measles01/experiment_surf_ideal/make03_pool_brick.py rename to model_measles/experiment_surf_ideal/make03_pool_brick.py diff --git a/model_measles01/experiment_sweep_base/COMPS_ID.id b/model_measles/experiment_sweep_base/COMPS_ID.id similarity index 100% rename from model_measles01/experiment_sweep_base/COMPS_ID.id rename to model_measles/experiment_sweep_base/COMPS_ID.id diff --git a/model_measles01/experiment_sweep_base/make01_param_dict.py b/model_measles/experiment_sweep_base/make01_param_dict.py similarity index 100% rename from model_measles01/experiment_sweep_base/make01_param_dict.py rename to model_measles/experiment_sweep_base/make01_param_dict.py diff --git a/model_measles01/experiment_sweep_base/make02_launch_sims.py b/model_measles/experiment_sweep_base/make02_launch_sims.py similarity index 100% rename from model_measles01/experiment_sweep_base/make02_launch_sims.py rename to model_measles/experiment_sweep_base/make02_launch_sims.py diff --git a/model_measles01/experiment_sweep_base/make03_pool_brick.py b/model_measles/experiment_sweep_base/make03_pool_brick.py similarity index 100% rename from model_measles01/experiment_sweep_base/make03_pool_brick.py rename to model_measles/experiment_sweep_base/make03_pool_brick.py diff --git a/model_measles01/experiment_sweep_base_MCV2/COMPS_ID.id b/model_measles/experiment_sweep_base_MCV2/COMPS_ID.id similarity index 100% rename from model_measles01/experiment_sweep_base_MCV2/COMPS_ID.id rename to model_measles/experiment_sweep_base_MCV2/COMPS_ID.id diff --git a/model_measles01/experiment_sweep_base_MCV2/make01_param_dict.py b/model_measles/experiment_sweep_base_MCV2/make01_param_dict.py similarity index 100% rename from model_measles01/experiment_sweep_base_MCV2/make01_param_dict.py rename to model_measles/experiment_sweep_base_MCV2/make01_param_dict.py diff --git a/model_measles01/experiment_sweep_base_MCV2/make02_launch_sims.py b/model_measles/experiment_sweep_base_MCV2/make02_launch_sims.py similarity index 100% rename from model_measles01/experiment_sweep_base_MCV2/make02_launch_sims.py rename to model_measles/experiment_sweep_base_MCV2/make02_launch_sims.py diff --git a/model_measles01/experiment_sweep_base_MCV2/make03_pool_brick.py b/model_measles/experiment_sweep_base_MCV2/make03_pool_brick.py similarity index 100% rename from model_measles01/experiment_sweep_base_MCV2/make03_pool_brick.py rename to model_measles/experiment_sweep_base_MCV2/make03_pool_brick.py diff --git a/model_measles01/experiment_sweep_base_SIAs/COMPS_ID.id b/model_measles/experiment_sweep_base_SIAs/COMPS_ID.id similarity index 100% rename from model_measles01/experiment_sweep_base_SIAs/COMPS_ID.id rename to model_measles/experiment_sweep_base_SIAs/COMPS_ID.id diff --git a/model_measles01/experiment_sweep_base_SIAs/make01_param_dict.py b/model_measles/experiment_sweep_base_SIAs/make01_param_dict.py similarity index 100% rename from model_measles01/experiment_sweep_base_SIAs/make01_param_dict.py rename to model_measles/experiment_sweep_base_SIAs/make01_param_dict.py diff --git a/model_measles01/experiment_sweep_base_SIAs/make02_launch_sims.py b/model_measles/experiment_sweep_base_SIAs/make02_launch_sims.py similarity index 100% rename from model_measles01/experiment_sweep_base_SIAs/make02_launch_sims.py rename to model_measles/experiment_sweep_base_SIAs/make02_launch_sims.py diff --git a/model_measles01/experiment_sweep_base_SIAs/make03_pool_brick.py b/model_measles/experiment_sweep_base_SIAs/make03_pool_brick.py similarity index 100% rename from model_measles01/experiment_sweep_base_SIAs/make03_pool_brick.py rename to model_measles/experiment_sweep_base_SIAs/make03_pool_brick.py diff --git a/model_measles01/figure_agehist/make_fig_agehist.py b/model_measles/figure_agehist/make_fig_agehist.py similarity index 100% rename from model_measles01/figure_agehist/make_fig_agehist.py rename to model_measles/figure_agehist/make_fig_agehist.py diff --git a/model_measles01/figure_burden/make_fig_burden.py b/model_measles/figure_burden/make_fig_burden.py similarity index 100% rename from model_measles01/figure_burden/make_fig_burden.py rename to model_measles/figure_burden/make_fig_burden.py diff --git a/model_measles01/figure_heatmap/make_fig_heatmap.py b/model_measles/figure_heatmap/make_fig_heatmap.py similarity index 100% rename from model_measles01/figure_heatmap/make_fig_heatmap.py rename to model_measles/figure_heatmap/make_fig_heatmap.py diff --git a/model_measles01/figure_pyramids/make_fig_pyramids.py b/model_measles/figure_pyramids/make_fig_pyramids.py similarity index 100% rename from model_measles01/figure_pyramids/make_fig_pyramids.py rename to model_measles/figure_pyramids/make_fig_pyramids.py diff --git a/model_measles01/figure_trends/make_fig_trends.py b/model_measles/figure_trends/make_fig_trends.py similarity index 100% rename from model_measles01/figure_trends/make_fig_trends.py rename to model_measles/figure_trends/make_fig_trends.py diff --git a/model_measles_gha01/Assets/python/builder_campaign.py b/model_measles_gha01/Assets/python/builder_campaign.py index 70cdf853..a3a4c2aa 100644 --- a/model_measles_gha01/Assets/python/builder_campaign.py +++ b/model_measles_gha01/Assets/python/builder_campaign.py @@ -13,8 +13,9 @@ import emod_api.campaign as camp_module -from emod_camp_events import build_node_list, ce_br_force, ce_RI, ce_SIA, \ - ce_inf_force, ce_inf_mod +from emod_camp_events import ce_br_force, ce_inf_force, ce_RI, ce_SIA, \ + ce_inf_mod +from emod_camp_events import build_node_list from emod_constants import CAMP_FILE, BASE_YEAR # ***************************************************************************** @@ -22,6 +23,9 @@ def campaignBuilder(): + # Get schema + sch_data = gdata.schema_json + # Variables for this simulation PEAK_SIZE = gdata.var_params['R0_peak_magnitude'] PEAK_TIME = gdata.var_params['R0_peak_day'] @@ -37,7 +41,15 @@ def campaignBuilder(): BR_MULT_X = gdata.brate_mult_x BR_MULT_Y = gdata.brate_mult_y start_day = 365.0*(gdata.start_year-BASE_YEAR) - camp_event = ce_br_force(ALL_NODES, BR_MULT_X, BR_MULT_Y, start_day) + camp_event = ce_br_force(sch_data, ALL_NODES, BR_MULT_X, BR_MULT_Y, + start_day=start_day) + camp_module.add(camp_event) + + # R0 seasonality + start_day = 365.0*(gdata.start_year-BASE_YEAR) + camp_event = ce_inf_force(sch_data, ALL_NODES, PEAK_TIME, PEAK_WIDE, + step_size=PEAK_SIZE, start_day=start_day, + dt=gdata.t_step_days) camp_module.add(camp_event) # RI @@ -62,8 +74,9 @@ def campaignBuilder(): mcv1_list = [init_mcv1] + (mcv1_vec[time_vec > 0.0]).tolist() + \ [np.mean(mcv1_vec[-3:])] - camp_event = ce_RI(n_list, start_day=DAY_MIN, - coverage_x=time_list, coverage_y=mcv1_list) + camp_event = ce_RI(sch_data, n_list, start_day=DAY_MIN, + coverage_x=time_list, coverage_y=mcv1_list, + base_take=0.95,) camp_module.add(camp_event) # SIAs @@ -79,20 +92,16 @@ def campaignBuilder(): age_yr_max = dict_sia[sia_name]['age_yr_max'] age_yr_min = dict_sia[sia_name]['age_yr_min'] - camp_event = ce_SIA(ALL_NODES, start_day=sia_day, coverage=SIA_COVER, - yrs_min=age_yr_min, yrs_max=age_yr_max) + camp_event = ce_SIA(sch_data, ALL_NODES, start_day=sia_day, + yrs_max=age_yr_max, yrs_min=age_yr_min, + coverage=SIA_COVER, base_take=0.95) camp_module.add(camp_event) - # R0 seasonality - start_day = 365.0*(gdata.start_year-BASE_YEAR) - camp_event = ce_inf_force(ALL_NODES, PEAK_TIME, PEAK_WIDE, PEAK_SIZE, - start_day=start_day, dt=gdata.t_step_days) - camp_module.add(camp_event) - # Infectivity trough from COVID start_day = 365.0*(2020.0-BASE_YEAR) - camp_event = ce_inf_mod(ALL_NODES, start_day=start_day, - dt_days=365.0*2.7, mult_val=0.60) + camp_event = ce_inf_mod(sch_data, ALL_NODES, + start_day=start_day, dt_days=365.0*2.7, + mult_val=0.60) camp_module.add(camp_event) # End file construction diff --git a/model_measles_gha01/Assets/python/builder_config.py b/model_measles_gha01/Assets/python/builder_config.py index 80248cfd..52dcfef4 100644 --- a/model_measles_gha01/Assets/python/builder_config.py +++ b/model_measles_gha01/Assets/python/builder_config.py @@ -6,26 +6,10 @@ import global_data as gdata -import numpy as np - from emod_constants import CAMP_FILE, REPORTS_FILE, BASE_YEAR, \ DIST_CMPLX, DIST_GAMMA, DIST_GAUSS -# ***************************************************************************** - - -def max_coeff_ref(exp_vals): - - if (np.min(exp_vals) < 0.0 or np.max(exp_vals) > 8.0): - raise Exception('Network exponent out of range.') - - x_ref = np.array([0, 0.25, 0.5, 0.75, 1, 2, 3, 4, 5, 6, 7, 8]) - y_ref = np.array([-2.794, -1.298, 0.155, 1.528, 2.797, 6.924, - 9.774, 12.22, 14.44, 16.56, 18.65, 20.75]) - - max_coeffs = np.interp(exp_vals, x_ref, y_ref).tolist() - - return max_coeffs +from emod_config_func import grav_coeff_guess # ***************************************************************************** @@ -33,14 +17,13 @@ def max_coeff_ref(exp_vals): def update_config_obj(config): # Variables for this simulation + RUN_NUM = gdata.var_params['run_number'] R0 = gdata.var_params['R0'] - NI_LN_MULT = gdata.var_params['net_inf_ln_mult'] - NI_POWER = gdata.var_params['net_inf_power'] + NI_LN_MULT = [gdata.var_params['net_inf_ln_mult']] + NI_POWER = [gdata.var_params['net_inf_power']] NI_MAXFRAC = gdata.var_params['net_inf_maxfrac'] - RUN_NUM = gdata.var_params['run_number'] END_YEAR = gdata.var_params['end_year'] AGENT_RATE = gdata.var_params['agent_rate'] - CORR_ACQ_TRANS = gdata.var_params['corr_acq_trans'] # Config parameters object (read only dictionary) cp = config.parameters @@ -59,7 +42,7 @@ def update_config_obj(config): # Intrahost cp.Base_Infectivity_Distribution = DIST_GAMMA - cp.Base_Infectivity_Scale = R0/gdata.inf_dur_mean + cp.Base_Infectivity_Scale = R0/gdata.inf_prd_mean cp.Base_Infectivity_Shape = 1.0 cp.Incubation_Period_Distribution = DIST_GAMMA @@ -67,35 +50,30 @@ def update_config_obj(config): cp.Incubation_Period_Shape = 3.5 cp.Infectious_Period_Distribution = DIST_GAUSS - cp.Infectious_Period_Gaussian_Mean = gdata.inf_dur_mean + cp.Infectious_Period_Gaussian_Mean = gdata.inf_prd_mean cp.Infectious_Period_Gaussian_Std_Dev = 2.0 cp.Enable_Nonuniform_Shedding = 1.0 cp.Shedding_Distribution_Alpha = 10.0 cp.Shedding_Distribution_Beta = 10.0 - cp.Enable_Infection_Rate_Overdispersion = 1 - cp.Enable_Infectivity_Scaling = 1 - - cp.Symptomatic_Infectious_Offset = 11.0 - cp.Enable_Disease_Mortality = 0 - cp.Acquisition_Transmission_Correlation = CORR_ACQ_TRANS + cp.Symptomatic_Infectious_Offset = 11.0 # Immunity cp.Enable_Immunity = 1 cp.Enable_Immune_Decay = 0 cp.Post_Infection_Acquisition_Multiplier = 0.0 - cp.Post_Infection_Transmission_Multiplier = 0.0 cp.Post_Infection_Mortality_Multiplier = 0.0 + cp.Post_Infection_Transmission_Multiplier = 0.0 cp.Maternal_Acquire_Config.Initial_Effect = 1.0 cp.Maternal_Acquire_Config.Enable_Box_Duration_Distribution = 1 cp.Maternal_Acquire_Config.Box_Duration_Distribution = DIST_GAUSS - cp.Maternal_Acquire_Config.Box_Duration_Gaussian_Mean = 150.0 - cp.Maternal_Acquire_Config.Box_Duration_Gaussian_Std_Dev = 80.0 + cp.Maternal_Acquire_Config.Box_Duration_Gaussian_Mean = 120.0 + cp.Maternal_Acquire_Config.Box_Duration_Gaussian_Std_Dev = 67.0 cp.Enable_Initial_Susceptibility_Distribution = 1 cp.Susceptibility_Initialization_Distribution_Type = DIST_CMPLX @@ -104,13 +82,13 @@ def update_config_obj(config): cp.Enable_Interventions = 1 cp.Campaign_Filename = CAMP_FILE - # Network Infectivity - ni_coeff = np.exp(max_coeff_ref(NI_POWER) + NI_LN_MULT) + # Infectivity + cp.Enable_Acquisition_Heterogeneity = 0 + cp.Enable_Infection_Rate_Overdispersion = 0 cp.Enable_Network_Infectivity = 1 - - cp.Network_Infectivity_Coefficient = [ni_coeff] - cp.Network_Infectivity_Exponent = [NI_POWER] + cp.Network_Infectivity_Coefficient = grav_coeff_guess(NI_POWER, NI_LN_MULT) + cp.Network_Infectivity_Exponent = NI_POWER cp.Network_Infectivity_Max_Export_Frac = NI_MAXFRAC cp.Network_Infectivity_Min_Distance = 1 @@ -120,11 +98,11 @@ def update_config_obj(config): cp.Individual_Sampling_Type = 'ADAPTED_SAMPLING_BY_IMMUNE_STATE' cp.Min_Node_Population_Samples = gdata.demog_min_pop cp.Base_Individual_Sample_Rate = 1.0/AGENT_RATE - cp.Relative_Sample_Rate_Immune = 0.02 + cp.Relative_Sample_Rate_Immune = 0.01 cp.Immune_Threshold_For_Downsampling = 1.0e-5 cp.Immune_Downsample_Min_Age = 365.0 - # Demographic parameters + # Demographics cp.Enable_Demographics_Builtin = 0 cp.Enable_Vital_Dynamics = 1 @@ -136,8 +114,6 @@ def update_config_obj(config): enum_str = 'NONDISEASE_MORTALITY_BY_YEAR_AND_AGE_FOR_EACH_GENDER' cp.Death_Rate_Dependence = enum_str - cp.Enable_Acquisition_Heterogeneity = 1 - cp.Demographics_Filenames = gdata.demog_files # Reporting @@ -147,8 +123,6 @@ def update_config_obj(config): cp.SQL_Start_Time = 365.0*(gdata.start_year_log-BASE_YEAR) cp.SQL_Events = ["NewlySymptomatic"] - cp.Enable_Spatial_Output = 0 - cp.Custom_Reports_Filename = REPORTS_FILE # Logging diff --git a/model_measles_gha01/Assets/python/builder_demographics.py b/model_measles_gha01/Assets/python/builder_demographics.py index a9d84bf4..cb1b1794 100644 --- a/model_measles_gha01/Assets/python/builder_demographics.py +++ b/model_measles_gha01/Assets/python/builder_demographics.py @@ -10,7 +10,8 @@ import numpy as np -from emod_api.demographics.Demographics import Demographics, Node +from emod_api.demographics.demographics import Demographics +from emod_api.demographics.node import Node from emod_demog_func import demog_vd_calc, demog_vd_over, demog_is_over from emod_constants import DEMOG_FILE, DEMOG_IRS @@ -21,9 +22,6 @@ def demographicsBuilder(): # Variables for this simulation - PROC_DISPER = gdata.var_params['proc_overdispersion'] - SUB_ADM02 = True - IND_RISK_VAR = gdata.var_params['ind_variance_risk'] R0 = gdata.var_params['R0'] LOG10_IMP = gdata.var_params['log10_import_rate'] @@ -32,15 +30,13 @@ def demographicsBuilder(): fname_pop = os.path.join('Assets', 'data', dat_file) # Calculate vital dynamics - vd_tup = demog_vd_calc(fname_pop, gdata.start_year) + vd_tup = demog_vd_calc(fname_pop, gdata.start_year, steady_state=False) gdata.brate_mult_x = vd_tup[5] gdata.brate_mult_y = vd_tup[6] # Load population data - fname = 'demog_data_ADM02.csv' - if (SUB_ADM02): - fname = 'demog_data_ADM02_sub_100km.csv' + fname = 'demog_data_ADM02_sub_100km.csv' fname = os.path.join('Assets', 'data', fname) with open(fname) as fid01: flines = [lval.strip().split(',') for lval in fid01.readlines()[1:]] @@ -68,9 +64,7 @@ def demographicsBuilder(): node_obj.node_attributes.extra_attributes = irs_dict # Nameset for admin02 - adm02_subset = list_nam.tolist() - if (SUB_ADM02): - adm02_subset = [n_val.rsplit(':', 1)[0] for n_val in list_nam] + adm02_subset = [n_val.rsplit(':', 1)[0] for n_val in list_nam] list_adm02 = sorted(list(set(adm02_subset))) adm01_subset = [n_val.rsplit(':', 1)[0] for n_val in list_adm02] list_adm01 = sorted(list(set(adm01_subset))) @@ -90,33 +84,28 @@ def demographicsBuilder(): gdata.adm01_idlist = adm01_dict # Create primary file - ref_name = 'measles-custom' - demog_obj = Demographics(nodes=node_list, idref=ref_name) - - # Save filename to global data for use in other functions - gdata.demog_files.append(DEMOG_FILE) + ref_name = 'Demographics_Datafile' + demog_obj = Demographics(nodes=node_list, idref=ref_name, + set_defaults=False) # Update defaults in primary file - demog_obj.raw['Defaults']['IndividualAttributes'].clear() - iadict = {'AcquisitionHeterogeneityVariance': IND_RISK_VAR} - demog_obj.raw['Defaults']['IndividualAttributes'].update(iadict) + demog_obj.default_node.individual_attributes.parameter_dict = dict() + demog_obj.default_node.node_attributes.parameter_dict = dict() - demog_obj.raw['Defaults']['NodeAttributes'].clear() - nadict = {'InfectivityOverdispersion': PROC_DISPER, - 'InfectivityMultiplier': 1.0} - demog_obj.raw['Defaults']['NodeAttributes'].update(nadict) + # Write primary demographics file + demog_obj.to_file(path=DEMOG_FILE) - # Write vital dynamics overlay - nfname = demog_vd_over(ref_name, node_list, vd_tup[4], - vd_tup[1], vd_tup[2], vd_tup[3]) - gdata.demog_files.append(nfname) + # Save filename to global data for use in other functions + gdata.demog_files.append(DEMOG_FILE) # Write initial susceptibility overlay nfname = demog_is_over(ref_name, node_list, R0, vd_tup[3]) gdata.demog_files.append(nfname) - # Write primary demographics file - demog_obj.generate_file(name=DEMOG_FILE) + # Write vital dynamics overlay + nfname = demog_vd_over(ref_name, node_list, vd_tup[4], + vd_tup[1], vd_tup[2], vd_tup[3]) + gdata.demog_files.append(nfname) # Save the demographics object for use in other functions gdata.demog_object = demog_obj diff --git a/model_measles_gha01/Assets/python/dtk_in_process.py b/model_measles_gha01/Assets/python/dtk_in_process.py index 2f64e3ac..4e86fc41 100644 --- a/model_measles_gha01/Assets/python/dtk_in_process.py +++ b/model_measles_gha01/Assets/python/dtk_in_process.py @@ -27,7 +27,6 @@ def application(timestep): LOG_REP_RATE = gdata.var_params['log10_min_reporting'] ADM01_DICT = gdata.adm01_idlist - ADM01_CASE = gdata.adm01_cases # First call to in-process; initialize as needed if (gdata.first_call_bool): @@ -39,7 +38,7 @@ def application(timestep): gdata.adm01_cases = {adm01: 0 for adm01 in ADM01_DICT} - adm02_rate = {adm02: np.random.beta(0.33, 8.0) + adm02_rate = {adm02: np.random.beta(0.33, 8.0) for adm02 in gdata.adm02_idlist} with open('adm02_obsrate.json', 'w') as fid01: @@ -93,11 +92,11 @@ def application(timestep): # New campaign file camp_module.reset() CAMP_FILE = 'campaign_{:05d}.json'.format(int(TIME_VAL)) - ALL_NODES = gdata.demog_object.node_ids if (targ_nodes): sia_day = TIME_VAL+30.0 - camp_event = ce_SIA(targ_nodes, start_day=sia_day, coverage=0.50, + camp_event = ce_SIA(gdata.schema_json, targ_nodes, + start_day=sia_day, coverage=0.50, yrs_min=0.75, yrs_max=5.0) camp_module.add(camp_event) diff --git a/model_measles_gha01/Assets/python/dtk_post_process.py b/model_measles_gha01/Assets/python/dtk_post_process.py index c19bc08d..1f98f870 100644 --- a/model_measles_gha01/Assets/python/dtk_post_process.py +++ b/model_measles_gha01/Assets/python/dtk_post_process.py @@ -44,8 +44,8 @@ def application(output_path): BIN_EDGES = np.insert(BIN_EDGES, 0, START_TIME + 0.5) (inf_mo, tstamps) = np.histogram(gdata.data_vec_time, - bins = BIN_EDGES, - weights = gdata.data_vec_mcw) + bins=BIN_EDGES, + weights=gdata.data_vec_mcw) # Monthly timeseries parsed_dat[key_str]['timeseries'] = inf_mo.tolist() @@ -67,13 +67,13 @@ def application(output_path): BIN_EDGES = np.insert(BIN_EDGES, 0, START_TIME + 0.5) (inf_mo, _) = np.histogram(gdata.data_vec_time, - bins = BIN_EDGES, - weights = gdata.data_vec_mcw) + bins=BIN_EDGES, + weights=gdata.data_vec_mcw) # Calibration score from timeseries data (obj_val, scal_vec) = norpois_opt(ref_cases, inf_mo) - parsed_dat[key_str]['cal_val'] = float(obj_val) - parsed_dat[key_str]['rep_rate'] = float(scal_vec) + parsed_dat[key_str]['cal_val'] = obj_val + parsed_dat[key_str]['rep_rate'] = scal_vec # Write output dictionary with open(O_FILE, 'w') as fid01: diff --git a/model_measles_gha01/Assets/python/global_data.py b/model_measles_gha01/Assets/python/global_data.py index a7392c7d..cd64c300 100644 --- a/model_measles_gha01/Assets/python/global_data.py +++ b/model_measles_gha01/Assets/python/global_data.py @@ -7,6 +7,10 @@ # Control params sim_index = 0 var_params = dict() +schema_json = dict() + +# Python in-process +first_call_bool = True # Filename params demog_files = list() @@ -22,7 +26,6 @@ adm01_cases = None -first_call_bool = True prev_proc_time = -1.0 max_node_id = 0 @@ -33,7 +36,7 @@ adm01_list = None nobs_vec = None -inf_dur_mean = 18.0 +inf_prd_mean = 18.0 brate_mult_x = None brate_mult_y = None diff --git a/model_measles_gha01/experiment_gha_base/COMPS_ID.id b/model_measles_gha01/experiment_gha_base/COMPS_ID.id index 83b24ad6..dfebe67f 100644 --- a/model_measles_gha01/experiment_gha_base/COMPS_ID.id +++ b/model_measles_gha01/experiment_gha_base/COMPS_ID.id @@ -1 +1 @@ -53fe71ce-32a2-f011-aa26-b88303911bc1::Experiment \ No newline at end of file +3fff5113-e365-f111-92e7-000d3af5294c::Experiment \ No newline at end of file diff --git a/model_measles_gha01/experiment_gha_base/make01_param_dict.py b/model_measles_gha01/experiment_gha_base/make01_param_dict.py index 7f5da41c..9fc3f177 100644 --- a/model_measles_gha01/experiment_gha_base/make01_param_dict.py +++ b/model_measles_gha01/experiment_gha_base/make01_param_dict.py @@ -31,7 +31,7 @@ def write_param_dict(): param_dict = dict() param_dict[EXP_NAME] = 'Measles-GHA-Base' - param_dict[NUM_SIMS] = 600 + param_dict[NUM_SIMS] = 750 param_dict[EXP_V] = dict() param_dict[EXP_C] = dict() @@ -46,17 +46,17 @@ def write_param_dict(): # Run number (EMOD random seed) P_VAR['run_number'] = list(range(NSIMS)) + # Infectivity + vals = 9.0 + np.random.gamma(30.0, scale=0.133, size=NSIMS) + P_VAR['R0'] = (np.round(vals, 2)).tolist() + # Year to end simulation P_CON['end_year'] = 2025 # Coverage of SIAs in WHO calendar - P_CON['SIA_cover_GHA_2010'] = 0.75 - P_CON['SIA_cover_GHA_2013'] = 0.40 - P_CON['SIA_cover_GHA_2018'] = 0.15 - - # Infectivity - vals = 7.0 + np.random.gamma(30.0, scale=0.133, size=NSIMS) - P_VAR['R0'] = (np.round(vals, 2)).tolist() + P_CON['SIA_cover_GHA_2010'] = 0.60 + P_CON['SIA_cover_GHA_2013'] = 0.45 + P_CON['SIA_cover_GHA_2018'] = 0.10 # R0 seasonality P_CON['R0_peak_day'] = 65.0 @@ -68,21 +68,12 @@ def write_param_dict(): # Parameters for gravity model for network connections P_CON['net_inf_power'] = 2.0 - P_CON['net_inf_ln_mult'] = 0.2 + P_CON['net_inf_ln_mult'] = -0.2 P_CON['net_inf_maxfrac'] = 0.1 - # Correlation between acqusition and transmission heterogeneity - P_CON['corr_acq_trans'] = 0.8 - - # Individual risk variance - P_CON['ind_variance_risk'] = 0.4 - # Base agent weight; less than 10 may have memory issues P_CON['agent_rate'] = 25.0 - # Node level overdispersion; 0.0 = Poisson - P_CON['proc_overdispersion'] = 0.4 - # Reactive campaign case threshold (observed) for admin-1 P_CON['adm01_case_threshold'] = 1.0e6 diff --git a/model_measles_gha01/experiment_gha_test/COMPS_ID.id b/model_measles_gha01/experiment_gha_test/COMPS_ID.id index 8f8347c1..2c0ee5f6 100644 --- a/model_measles_gha01/experiment_gha_test/COMPS_ID.id +++ b/model_measles_gha01/experiment_gha_test/COMPS_ID.id @@ -1 +1 @@ -e12a4ded-32a2-f011-aa26-b88303911bc1::Experiment \ No newline at end of file +ac422f8c-0f66-f111-92e7-000d3af5294c::Experiment \ No newline at end of file diff --git a/model_measles_gha01/experiment_gha_test/make01_param_dict.py b/model_measles_gha01/experiment_gha_test/make01_param_dict.py index 4d534058..7adac061 100644 --- a/model_measles_gha01/experiment_gha_test/make01_param_dict.py +++ b/model_measles_gha01/experiment_gha_test/make01_param_dict.py @@ -46,17 +46,17 @@ def write_param_dict(): # Run number (EMOD random seed) P_VAR['run_number'] = list(range(NSIMS)) + # Infectivity + vals = 9.0 + np.random.gamma(30.0, scale=0.133, size=NSIMS) + P_VAR['R0'] = (np.round(vals, 2)).tolist() + # Year to end simulation P_CON['end_year'] = 2025 # Coverage of SIAs in WHO calendar - P_CON['SIA_cover_GHA_2010'] = 0.75 - P_CON['SIA_cover_GHA_2013'] = 0.40 - P_CON['SIA_cover_GHA_2018'] = 0.15 - - # Infectivity - vals = 7.0 + np.random.gamma(30.0, scale=0.133, size=NSIMS) - P_VAR['R0'] = (np.round(vals, 2)).tolist() + P_CON['SIA_cover_GHA_2010'] = 0.60 + P_CON['SIA_cover_GHA_2013'] = 0.45 + P_CON['SIA_cover_GHA_2018'] = 0.10 # R0 seasonality P_CON['R0_peak_day'] = 65.0 @@ -68,21 +68,12 @@ def write_param_dict(): # Parameters for gravity model for network connections P_CON['net_inf_power'] = 2.0 - P_CON['net_inf_ln_mult'] = 0.2 + P_CON['net_inf_ln_mult'] = -0.2 P_CON['net_inf_maxfrac'] = 0.1 - # Correlation between acqusition and transmission heterogeneity - P_CON['corr_acq_trans'] = 0.8 - - # Individual risk variance - P_CON['ind_variance_risk'] = 0.4 - # Base agent weight; less than 10 may have memory issues P_CON['agent_rate'] = 25.0 - # Node level overdispersion; 0.0 = Poisson - P_CON['proc_overdispersion'] = 0.4 - # Reactive campaign case threshold (observed) for admin-1 case_thresh = np.random.uniform(low=10, high=1000, size=NSIMS).tolist() P_VAR['adm01_case_threshold'] = case_thresh diff --git a/model_measles_gha01/figure_baseline/make_fig_baseline.py b/model_measles_gha01/figure_baseline/make_fig_baseline.py index a1b58b8a..fd2258af 100644 --- a/model_measles_gha01/figure_baseline/make_fig_baseline.py +++ b/model_measles_gha01/figure_baseline/make_fig_baseline.py @@ -24,7 +24,7 @@ def make_fig(): YMAX = 400 - CCUT = -4e3 + CCUT = -3300 for dirname in DIRNAMES: @@ -40,10 +40,17 @@ def make_fig(): nsims = int(param_dict[NUM_SIMS]) tvals = dbrick.pop('tstamps') - inf_data = np.zeros((nsims, len(tvals))) - scale_vec = np.zeros((nsims, 1))-1 + inf_data = np.zeros((nsims, len(tvals))) - 1 + scale_vec = np.zeros((nsims, 2)) + scale_mat = np.zeros((nsims, len(tvals))) cal_vec = np.zeros(nsims) + # Reference data + tpath = os.path.join('..', 'Assets', 'data', 'GHA_epi.json') + with open(tpath) as fid01: + ref_dat = json.load(fid01) + ref_cases = np.array(ref_dat['cases_mo']) + for sim_idx_str in dbrick: if (not sim_idx_str.isdigit()): continue @@ -51,10 +58,12 @@ def make_fig(): sim_obj = dbrick[sim_idx_str] inf_data[sim_idx, :] = np.array(sim_obj['timeseries']) - scale_vec[sim_idx, 0] = sim_obj['rep_rate'] + scale_vec[sim_idx, :] = sim_obj['rep_rate'] + (mval, bval) = sim_obj['rep_rate'] + scale_mat[sim_idx, :] = np.exp(mval*np.arange(len(tvals)) + bval) cal_vec[sim_idx] = sim_obj['cal_val'] - gidx = (scale_vec[:, 0] >= 0) + gidx = (inf_data[:, 0] >= 0) gidx = gidx & (cal_vec > CCUT) # Figure @@ -91,7 +100,7 @@ def make_fig(): xval = np.array(tvals)/365+BASE_YEAR - inf_data_sort = np.sort(inf_data[gidx, :]*scale_vec[gidx], axis=0) + inf_data_sort = np.sort(inf_data[gidx, :]*scale_mat[gidx, :], axis=0) for patwid in [0.475, 0.375, 0.25]: xydat = np.zeros((2*inf_data_sort.shape[1], 2)) xydat[:, 0] = np.hstack((xval, xval[::-1])) @@ -103,10 +112,8 @@ def make_fig(): alpha=0.7-patwid, edgecolor=None) axs01.add_patch(poly_shp) - yval = np.mean(inf_data[gidx]*scale_vec[gidx], axis=0) + yval = np.mean(inf_data[gidx, :]*scale_mat[gidx, :], axis=0) axs01.plot(xval, yval, color='C0', linewidth=2) - # print(np.mean(np.sum(inf_data[gidx, -60:], axis=1))) - # print(np.std(np.sum(inf_data[gidx, -60:], axis=1))) axs01.set_xlim(2010, 2025) axs01.set_ylim(0, YMAX) @@ -123,7 +130,7 @@ def make_fig(): llabel = 'SIA' if (ref_dat_sia[sia_name]['age_yr_max'] > 5.0): lstyle = '--' - lwidth = 5 + lwidth = 4 llabel = 'RCV Catch-up' axs01.plot(sia01, [0, YMAX], color='c', linewidth=lwidth, ls=lstyle) @@ -139,8 +146,10 @@ def make_fig(): axs01.set_ylabel('Number of Simulations', fontsize=16) axs01.set_xlabel('Objective Function', fontsize=16) - axs01.hist(cal_vec[gidx], edgecolor='k', - bins=np.arange(-8e3, -2e3, 200)) + axs01.hist(cal_vec, edgecolor='k', alpha=0.2, facecolor='C0', + bins=np.arange(-6e3, -2e3, 100)) + axs01.hist(cal_vec[gidx], edgecolor='k', facecolor='C0', + bins=np.arange(-6e3, -2e3, 100)) # Reporting rate axs01 = fig01.add_subplot(1, 3, 3) @@ -149,10 +158,20 @@ def make_fig(): axs01.grid(visible=True, which='major', ls='-', lw=0.5, label='') axs01.grid(visible=True, which='minor', ls=':', lw=0.1) axs01.set_axisbelow(True) - axs01.set_ylabel('Probability', fontsize=16) - axs01.set_xlabel('Reporting Rate (%)', fontsize=16) - - axs01.hist(100*scale_vec[gidx], edgecolor='k', bins=50, density=True) + axs01.set_ylabel('Base Reporting Rate - 2011 (%)', fontsize=16) + axs01.set_xlabel('Annual Change (YoY %)', fontsize=16) + + axs01.set_xlim(-15, 40) + axs01.set_ylim(0, 6) + + axs01.plot(100*(np.exp(12*scale_vec[gidx, 0])-1), + 100*(np.exp(scale_vec[gidx, 1])), 'k.') + axs01.plot(100*(np.exp(12*scale_vec[:, 0])-1), + 100*(np.exp(scale_vec[:, 1])), 'k.', alpha=0.1) + axs01.plot(np.mean(100*(np.exp(12*scale_vec[gidx, 0])-1), axis=0), + np.mean(100*(np.exp(scale_vec[gidx, 1])), axis=0), + marker='.', markersize=20, color='C1', + markeredgecolor='C3', markeredgewidth=2) plt.tight_layout() plt.savefig('fig_baseline01.png') diff --git a/model_measles_gha01/figure_baseline/make_fig_calib.py b/model_measles_gha01/figure_baseline/make_fig_calib.py index 7178c7c8..44ff3175 100644 --- a/model_measles_gha01/figure_baseline/make_fig_calib.py +++ b/model_measles_gha01/figure_baseline/make_fig_calib.py @@ -15,7 +15,7 @@ # ***************************************************************************** -DIRNAMES = ['experiment_gha_base01'] +DIRNAMES = ['experiment_gha_base'] # ***************************************************************************** @@ -49,22 +49,24 @@ def make_fig(): cal_vec[sim_idx] = sim_obj['cal_val'] gidx = (scale_vec[:, 0] >= 0) + oidx = np.argsort(cal_vec[gidx]) sparam = param_dict[EXP_V] skeys = list(sparam.keys()) skeys.remove('run_number') print(skeys) nfigs = len(skeys) + nfig0 = nfigs - 1 # Figure - fig01 = plt.figure(figsize=(8*nfigs, 8*nfigs)) + fig01 = plt.figure(figsize=(4*nfigs, 4*nfigs)) for k1 in range(nfigs): for k2 in range(k1, nfigs): if (k1 == k2): continue - axs01 = fig01.add_subplot(nfigs, nfigs, k1*nfigs+k2+1) + axs01 = fig01.add_subplot(nfig0, nfig0, k1*nfig0 + k2) axs01.grid(visible=True, which='major', ls='-', lw=0.5) axs01.grid(visible=True, which='minor', ls=':', lw=0.1) axs01.set_axisbelow(True) @@ -74,12 +76,13 @@ def make_fig(): axs01.set_xlabel(skeys[k1]) axs01.set_ylabel(skeys[k2]) - axs01.scatter(xval[gidx], yval[gidx], c=cal_vec[gidx], + axs01.scatter(xval[gidx][oidx], yval[gidx][oidx], + c=cal_vec[gidx][oidx], s=4, vmin=-4.0e3, vmax=-2.5e3) print(min(cal_vec[gidx]), max(cal_vec[gidx])) plt.tight_layout() - plt.savefig('fig_baseline01.png') + plt.savefig('fig_baseline001.png') plt.close() return None diff --git a/model_measles_gha01/figure_response/make_fig_averted.py b/model_measles_gha01/figure_response/make_fig_averted.py index f262f901..0dc8faa1 100644 --- a/model_measles_gha01/figure_response/make_fig_averted.py +++ b/model_measles_gha01/figure_response/make_fig_averted.py @@ -25,7 +25,7 @@ def make_fig(): - CCUT = -4e3 + CCUT = -3300 for dirname in DIRNAMES: @@ -43,8 +43,7 @@ def make_fig(): tvals = dbrick.pop('tstamps') - inf_data = np.zeros((nsims, len(tvals))) - scale_vec = np.zeros((nsims, 1))-1 + inf_data = np.zeros((nsims, len(tvals))) - 1 cal_vec = np.zeros(nsims) for sim_idx_str in dbrick: @@ -54,10 +53,9 @@ def make_fig(): sim_obj = dbrick[sim_idx_str] inf_data[sim_idx, :] = np.array(sim_obj['timeseries']) - scale_vec[sim_idx, 0] = sim_obj['rep_rate'] cal_vec[sim_idx] = sim_obj['cal_val'] - gidx = (scale_vec[:, 0] >= 0) + gidx = (inf_data[:, 0] >= 0) gidx = gidx & (cal_vec > CCUT) ntval = np.array(tvals)/365.0 + BASE_YEAR @@ -115,11 +113,11 @@ def make_fig(): plt.contour(np.power(10.0, xvec[:-1, :-1]+dxval/2), yvec[:-1, :-1]+dyval/2, zmat, - levels=[25e3, 40e3, 60e3, 80e3], - linewidths=3, vmin=0, vmax=100e3) + levels=[25e3, 40e3, 60e3, 80e3, 100e3, 120e3], + linewidths=3, vmin=0, vmax=120e3) axs01.scatter(np.power(10.0, xval[gdx2]), yval[gdx2], c=cval[gdx2], - s=2, vmin=0, vmax=100e3, alpha=0.7) + s=2, vmin=0, vmax=120e3, alpha=0.7) ticloc = [0.001, 0.01, 0.1] ticlab = ['0.1%', '1.0%', '10%'] @@ -132,8 +130,8 @@ def make_fig(): axs01.plot([0.04, 0.04], [0, 1000], 'k:') - ticloc = [0.0, 0.2, 0.4, 0.6, 0.8, 1.0] - ticlab = ['0', '20k', '40k', '60k', '80k', '100k'] + ticloc = [0, 1/6, 2/6, 3/6, 4/6, 5/6, 1] + ticlab = ['0', '20k', '40k', '60k', '80k', '100k', '120k'] cbar_handle.set_ticks(ticks=ticloc) cbar_handle.set_ticklabels(ticlab) diff --git a/model_measles_nga01/Assets/data/NGA_MCV1.csv 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a/model_measles_nga01/Assets/data/NGA_MCV1.json b/model_measles_nga01/Assets/data/NGA_MCV1.json deleted file mode 100644 index 799fca8d..00000000 --- a/model_measles_nga01/Assets/data/NGA_MCV1.json +++ /dev/null @@ -1,800 +0,0 @@ -{ - "namevec": [ - "AFRO:NIGERIA:ABIA:ABA_NORTH", - "AFRO:NIGERIA:ABIA:ABA_SOUTH", - "AFRO:NIGERIA:ABIA:AROCHUKWU", - "AFRO:NIGERIA:ABIA:BENDE", - "AFRO:NIGERIA:ABIA:IKWUANO", - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_NORTH", - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_SOUTH", - "AFRO:NIGERIA:ABIA:ISUIKWUATO", - "AFRO:NIGERIA:ABIA:OBI_NGWA", - "AFRO:NIGERIA:ABIA:OHAFIA", - "AFRO:NIGERIA:ABIA:OSISIOMA_NGWA", - "AFRO:NIGERIA:ABIA:UGWUNAGBO", - "AFRO:NIGERIA:ABIA:UKWA_EAST", - "AFRO:NIGERIA:ABIA:UKWA_WEST", - "AFRO:NIGERIA:ABIA:UMUAHIA_NORTH", - "AFRO:NIGERIA:ABIA:UMUAHIA_SOUTH", - "AFRO:NIGERIA:ABIA:UMU_NNEOCHI", - "AFRO:NIGERIA:ADAMAWA:DEMSA", - "AFRO:NIGERIA:ADAMAWA:FUFORE", - "AFRO:NIGERIA:ADAMAWA:GANYE", - "AFRO:NIGERIA:ADAMAWA:GIREI", - "AFRO:NIGERIA:ADAMAWA:GOMBI", - 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"AFRO:NIGERIA:AKWA_IBOM:IKOT_ABASI", - "AFRO:NIGERIA:AKWA_IBOM:IKOT_EKPENE", - "AFRO:NIGERIA:AKWA_IBOM:INI", - "AFRO:NIGERIA:AKWA_IBOM:ITU", - "AFRO:NIGERIA:AKWA_IBOM:MBO", - "AFRO:NIGERIA:AKWA_IBOM:MKPAT_ENIN", - "AFRO:NIGERIA:AKWA_IBOM:NSIT_ATAI", - "AFRO:NIGERIA:AKWA_IBOM:NSIT_IBOM", - "AFRO:NIGERIA:AKWA_IBOM:NSIT_UBIUM", - "AFRO:NIGERIA:AKWA_IBOM:OBOT_AKARA", - "AFRO:NIGERIA:AKWA_IBOM:OKOBO", - "AFRO:NIGERIA:AKWA_IBOM:ONNA", - "AFRO:NIGERIA:AKWA_IBOM:ORON", - "AFRO:NIGERIA:AKWA_IBOM:ORUK_ANAM", - "AFRO:NIGERIA:AKWA_IBOM:UDUNG_UKO", - "AFRO:NIGERIA:AKWA_IBOM:UKANAFUN", - "AFRO:NIGERIA:AKWA_IBOM:URUAN", - "AFRO:NIGERIA:AKWA_IBOM:URUE_OFFONG_ORUKO", - "AFRO:NIGERIA:AKWA_IBOM:UYO", - "AFRO:NIGERIA:ANAMBRA:AGUATA", - "AFRO:NIGERIA:ANAMBRA:ANAMBRA_EAST", - "AFRO:NIGERIA:ANAMBRA:ANAMBRA_WEST", - "AFRO:NIGERIA:ANAMBRA:ANAOCHA", - "AFRO:NIGERIA:ANAMBRA:AWKA_NORTH", - "AFRO:NIGERIA:ANAMBRA:AWKA_SOUTH", - "AFRO:NIGERIA:ANAMBRA:AYAMELUM", - "AFRO:NIGERIA:ANAMBRA:DUNUKOFIA", - "AFRO:NIGERIA:ANAMBRA:EKWUSIGO", - "AFRO:NIGERIA:ANAMBRA:IDEMILI_NORTH", - "AFRO:NIGERIA:ANAMBRA:IDEMILI_SOUTH", - "AFRO:NIGERIA:ANAMBRA:IHIALA", - "AFRO:NIGERIA:ANAMBRA:NJIKOKA", - "AFRO:NIGERIA:ANAMBRA:NNEWI_NORTH", - "AFRO:NIGERIA:ANAMBRA:NNEWI_SOUTH", - "AFRO:NIGERIA:ANAMBRA:OGBARU", - "AFRO:NIGERIA:ANAMBRA:ONITSHA_NORTH", - "AFRO:NIGERIA:ANAMBRA:ONITSHA_SOUTH", - "AFRO:NIGERIA:ANAMBRA:ORUMBA_NORTH", - "AFRO:NIGERIA:ANAMBRA:ORUMBA_SOUTH", - "AFRO:NIGERIA:ANAMBRA:OYI", - "AFRO:NIGERIA:BAUCHI:ALKALERI", - "AFRO:NIGERIA:BAUCHI:BAUCHI", - "AFRO:NIGERIA:BAUCHI:BOGORO", - "AFRO:NIGERIA:BAUCHI:DAMBAN", - "AFRO:NIGERIA:BAUCHI:DARAZO", - "AFRO:NIGERIA:BAUCHI:DASS", - "AFRO:NIGERIA:BAUCHI:GAMAWA", - "AFRO:NIGERIA:BAUCHI:GANJUWA", - "AFRO:NIGERIA:BAUCHI:GIADE", - "AFRO:NIGERIA:BAUCHI:ITAS_GADAU", - "AFRO:NIGERIA:BAUCHI:JAMAARE", - "AFRO:NIGERIA:BAUCHI:KATAGUM", - "AFRO:NIGERIA:BAUCHI:KIRFI", - "AFRO:NIGERIA:BAUCHI:MISAU", - "AFRO:NIGERIA:BAUCHI:NINGI", - "AFRO:NIGERIA:BAUCHI:SHIRA", - "AFRO:NIGERIA:BAUCHI:TAFAWA_BALEWA", - "AFRO:NIGERIA:BAUCHI:TORO", - "AFRO:NIGERIA:BAUCHI:WARJI", - "AFRO:NIGERIA:BAUCHI:ZAKI", - "AFRO:NIGERIA:BAYELSA:BRASS", - "AFRO:NIGERIA:BAYELSA:EKEREMOR", - "AFRO:NIGERIA:BAYELSA:KOLOKUMA_OPOKUMA", - "AFRO:NIGERIA:BAYELSA:NEMBE", - "AFRO:NIGERIA:BAYELSA:OGBIA", - "AFRO:NIGERIA:BAYELSA:SAGBAMA", - "AFRO:NIGERIA:BAYELSA:SOUTHERN_IJAW", - "AFRO:NIGERIA:BAYELSA:YENEGOA", - "AFRO:NIGERIA:BENUE:ADO", - "AFRO:NIGERIA:BENUE:AGATU", - "AFRO:NIGERIA:BENUE:APA", - "AFRO:NIGERIA:BENUE:BURUKU", - "AFRO:NIGERIA:BENUE:GBOKO", - "AFRO:NIGERIA:BENUE:GUMA", - "AFRO:NIGERIA:BENUE:GWER_EAST", - "AFRO:NIGERIA:BENUE:GWER_WEST", - "AFRO:NIGERIA:BENUE:KATSINA_ALA", - "AFRO:NIGERIA:BENUE:KONSHISHA", - "AFRO:NIGERIA:BENUE:KWANDE", - "AFRO:NIGERIA:BENUE:LOGO", - "AFRO:NIGERIA:BENUE:MAKURDI", - "AFRO:NIGERIA:BENUE:OBI", - "AFRO:NIGERIA:BENUE:OGBADIBO", - "AFRO:NIGERIA:BENUE:OHIMINI", - "AFRO:NIGERIA:BENUE:OJU", - "AFRO:NIGERIA:BENUE:OKPOKWU", - "AFRO:NIGERIA:BENUE:OTURKPO", - "AFRO:NIGERIA:BENUE:TARKA", - "AFRO:NIGERIA:BENUE:UKUM", - "AFRO:NIGERIA:BENUE:USHONGO", - "AFRO:NIGERIA:BENUE:VANDEIKYA", - "AFRO:NIGERIA:BORNO:ABADAM", - "AFRO:NIGERIA:BORNO:ASKIRA_UBA", - "AFRO:NIGERIA:BORNO:BAMA", - "AFRO:NIGERIA:BORNO:BAYO", - "AFRO:NIGERIA:BORNO:BIU", - "AFRO:NIGERIA:BORNO:CHIBOK", - "AFRO:NIGERIA:BORNO:DAMBOA", - "AFRO:NIGERIA:BORNO:DIKWA", - "AFRO:NIGERIA:BORNO:GUBIO", - "AFRO:NIGERIA:BORNO:GUZAMALA", - "AFRO:NIGERIA:BORNO:GWOZA", - "AFRO:NIGERIA:BORNO:HAWUL", - "AFRO:NIGERIA:BORNO:JERE", - "AFRO:NIGERIA:BORNO:KAGA", - "AFRO:NIGERIA:BORNO:KALA_BALGE", - "AFRO:NIGERIA:BORNO:KONDUGA", - "AFRO:NIGERIA:BORNO:KUKAWA", - "AFRO:NIGERIA:BORNO:KWAYA_KUSAR", - "AFRO:NIGERIA:BORNO:MAFA", - "AFRO:NIGERIA:BORNO:MAGUMERI", - "AFRO:NIGERIA:BORNO:MAIDUGURI", - "AFRO:NIGERIA:BORNO:MARTE", - "AFRO:NIGERIA:BORNO:MOBBAR", - "AFRO:NIGERIA:BORNO:MONGUNO", - "AFRO:NIGERIA:BORNO:NGALA", - "AFRO:NIGERIA:BORNO:NGANZAI", - "AFRO:NIGERIA:BORNO:SHANI", - "AFRO:NIGERIA:CROSS_RIVER:ABI", - "AFRO:NIGERIA:CROSS_RIVER:AKAMKPA", - "AFRO:NIGERIA:CROSS_RIVER:AKPABUYO", - "AFRO:NIGERIA:CROSS_RIVER:BAKASSI", - "AFRO:NIGERIA:CROSS_RIVER:BEKWARRA", - "AFRO:NIGERIA:CROSS_RIVER:BIASE", - "AFRO:NIGERIA:CROSS_RIVER:BOKI", - "AFRO:NIGERIA:CROSS_RIVER:CALABAR_MUNICIPAL", - "AFRO:NIGERIA:CROSS_RIVER:CALABAR_SOUTH", - "AFRO:NIGERIA:CROSS_RIVER:ETUNG", - "AFRO:NIGERIA:CROSS_RIVER:IKOM", - "AFRO:NIGERIA:CROSS_RIVER:OBANLIKU", - "AFRO:NIGERIA:CROSS_RIVER:OBUBRA", - "AFRO:NIGERIA:CROSS_RIVER:OBUDU", - "AFRO:NIGERIA:CROSS_RIVER:ODUKPANI", - "AFRO:NIGERIA:CROSS_RIVER:OGOJA", - "AFRO:NIGERIA:CROSS_RIVER:YAKURR", - "AFRO:NIGERIA:CROSS_RIVER:YALA", - "AFRO:NIGERIA:DELTA:ANIOCHA_NORTH", - "AFRO:NIGERIA:DELTA:ANIOCHA_SOUTH", - "AFRO:NIGERIA:DELTA:BOMADI", - "AFRO:NIGERIA:DELTA:BURUTU", - "AFRO:NIGERIA:DELTA:ETHIOPE_EAST", - "AFRO:NIGERIA:DELTA:ETHIOPE_WEST", - "AFRO:NIGERIA:DELTA:IKA_NORTH_EAST", - "AFRO:NIGERIA:DELTA:IKA_SOUTH", - "AFRO:NIGERIA:DELTA:ISOKO_NORTH", - "AFRO:NIGERIA:DELTA:ISOKO_SOUTH", - "AFRO:NIGERIA:DELTA:NDOKWA_EAST", - "AFRO:NIGERIA:DELTA:NDOKWA_WEST", - "AFRO:NIGERIA:DELTA:OKPE", - "AFRO:NIGERIA:DELTA:OSHIMILI_NORTH", - "AFRO:NIGERIA:DELTA:OSHIMILI_SOUTH", - "AFRO:NIGERIA:DELTA:PATANI", - "AFRO:NIGERIA:DELTA:SAPELE", - "AFRO:NIGERIA:DELTA:UDU", - "AFRO:NIGERIA:DELTA:UGHELLI_NORTH", - "AFRO:NIGERIA:DELTA:UGHELLI_SOUTH", - "AFRO:NIGERIA:DELTA:UKWUANI", - "AFRO:NIGERIA:DELTA:UVWIE", - "AFRO:NIGERIA:DELTA:WARRI_NORTH", - "AFRO:NIGERIA:DELTA:WARRI_SOUTH", - "AFRO:NIGERIA:DELTA:WARRI_SOUTH_WEST", - "AFRO:NIGERIA:EBONYI:ABAKALIKI", - "AFRO:NIGERIA:EBONYI:AFIKPO_NORTH", - "AFRO:NIGERIA:EBONYI:AFIKPO_SOUTH", - "AFRO:NIGERIA:EBONYI:EBONYI", - "AFRO:NIGERIA:EBONYI:EZZA_NORTH", - "AFRO:NIGERIA:EBONYI:EZZA_SOUTH", - "AFRO:NIGERIA:EBONYI:IKWO", - "AFRO:NIGERIA:EBONYI:ISHIELU", - "AFRO:NIGERIA:EBONYI:IVO", - "AFRO:NIGERIA:EBONYI:IZZI", - "AFRO:NIGERIA:EBONYI:OHAOZARA", - "AFRO:NIGERIA:EBONYI:OHAUKWU", - "AFRO:NIGERIA:EBONYI:ONICHA", - "AFRO:NIGERIA:EDO:AKOKO_EDO", - "AFRO:NIGERIA:EDO:EGOR", - "AFRO:NIGERIA:EDO:ESAN_CENTRAL", - "AFRO:NIGERIA:EDO:ESAN_NORTH_EAST", - "AFRO:NIGERIA:EDO:ESAN_SOUTH_EAST", - "AFRO:NIGERIA:EDO:ESAN_WEST", - "AFRO:NIGERIA:EDO:ETSAKO_CENTRAL", - "AFRO:NIGERIA:EDO:ETSAKO_EAST", - "AFRO:NIGERIA:EDO:ETSAKO_WEST", - "AFRO:NIGERIA:EDO:IGUEBEN", - "AFRO:NIGERIA:EDO:IKPOBA_OKHA", - "AFRO:NIGERIA:EDO:OREDO", - "AFRO:NIGERIA:EDO:ORHIONMWON", - "AFRO:NIGERIA:EDO:OVIA_NORTH_EAST", - "AFRO:NIGERIA:EDO:OVIA_SOUTH_WEST", - "AFRO:NIGERIA:EDO:OWAN_EAST", - "AFRO:NIGERIA:EDO:OWAN_WEST", - "AFRO:NIGERIA:EDO:UHUNMWONDE", - "AFRO:NIGERIA:EKITI:ADO_EKITI", - "AFRO:NIGERIA:EKITI:AIYEKIRE_GBONYIN", - "AFRO:NIGERIA:EKITI:EFON", - "AFRO:NIGERIA:EKITI:EKITI_EAST", - "AFRO:NIGERIA:EKITI:EKITI_SOUTH_WEST", - "AFRO:NIGERIA:EKITI:EKITI_WEST", - "AFRO:NIGERIA:EKITI:EMURE", - "AFRO:NIGERIA:EKITI:IDO_OSI", - "AFRO:NIGERIA:EKITI:IJERO", - "AFRO:NIGERIA:EKITI:IKERE", - "AFRO:NIGERIA:EKITI:IKOLE", - "AFRO:NIGERIA:EKITI:ILEJEMEJE", - "AFRO:NIGERIA:EKITI:IREPODUN_IFELODUN", - "AFRO:NIGERIA:EKITI:ISE_ORUN", - "AFRO:NIGERIA:EKITI:MOBA", - "AFRO:NIGERIA:EKITI:OYE", - "AFRO:NIGERIA:ENUGU:ANINRI", - "AFRO:NIGERIA:ENUGU:AWGU", - "AFRO:NIGERIA:ENUGU:ENUGU_EAST", - "AFRO:NIGERIA:ENUGU:ENUGU_NORTH", - "AFRO:NIGERIA:ENUGU:ENUGU_SOUTH", - "AFRO:NIGERIA:ENUGU:EZEAGU", - "AFRO:NIGERIA:ENUGU:IGBO_ETITI", - "AFRO:NIGERIA:ENUGU:IGBO_EZE_NORTH", - "AFRO:NIGERIA:ENUGU:IGBO_EZE_SOUTH", - "AFRO:NIGERIA:ENUGU:ISI_UZO", - "AFRO:NIGERIA:ENUGU:NKANU_EAST", - "AFRO:NIGERIA:ENUGU:NKANU_WEST", - "AFRO:NIGERIA:ENUGU:NSUKKA", - "AFRO:NIGERIA:ENUGU:OJI_RIVER", - "AFRO:NIGERIA:ENUGU:UDENU", - "AFRO:NIGERIA:ENUGU:UDI", - "AFRO:NIGERIA:ENUGU:UZO_UWANI", - "AFRO:NIGERIA:FCT_ABUJA:ABAJI", - "AFRO:NIGERIA:FCT_ABUJA:ABUJA_MUNICIPAL", - "AFRO:NIGERIA:FCT_ABUJA:BWARI", - "AFRO:NIGERIA:FCT_ABUJA:GWAGWALADA", - "AFRO:NIGERIA:FCT_ABUJA:KUJE", - "AFRO:NIGERIA:FCT_ABUJA:KWALI", - "AFRO:NIGERIA:GOMBE:AKKO", - "AFRO:NIGERIA:GOMBE:BALANGA", - "AFRO:NIGERIA:GOMBE:BILLIRI", - "AFRO:NIGERIA:GOMBE:DUKKU", - "AFRO:NIGERIA:GOMBE:FUNAKAYE", - "AFRO:NIGERIA:GOMBE:GOMBE", - "AFRO:NIGERIA:GOMBE:KALTUNGO", - "AFRO:NIGERIA:GOMBE:KWAMI", - "AFRO:NIGERIA:GOMBE:NAFADA_BAJOGA", - "AFRO:NIGERIA:GOMBE:SHOMGOM", - "AFRO:NIGERIA:GOMBE:YAMALTU_DEBA", - "AFRO:NIGERIA:IMO:ABOH_MBAISE", - "AFRO:NIGERIA:IMO:AHIAZU_MBAISE", - "AFRO:NIGERIA:IMO:EHIME_MBANO", - "AFRO:NIGERIA:IMO:EZINIHITTE", - "AFRO:NIGERIA:IMO:IDEATO_NORTH", - "AFRO:NIGERIA:IMO:IDEATO_SOUTH", - "AFRO:NIGERIA:IMO:IHITTE_UBOMA", - "AFRO:NIGERIA:IMO:IKEDURU", - "AFRO:NIGERIA:IMO:ISIALA_MBANO", - "AFRO:NIGERIA:IMO:ISU", - "AFRO:NIGERIA:IMO:MBAITOLI", - "AFRO:NIGERIA:IMO:NGOR_OKPALA", - "AFRO:NIGERIA:IMO:NJABA", - "AFRO:NIGERIA:IMO:NKWERRE", - "AFRO:NIGERIA:IMO:NWANGELE", - "AFRO:NIGERIA:IMO:OBOWO", - "AFRO:NIGERIA:IMO:OGUTA", - "AFRO:NIGERIA:IMO:OHAJI_EGBEMA", - "AFRO:NIGERIA:IMO:OKIGWE", - "AFRO:NIGERIA:IMO:ORLU", - "AFRO:NIGERIA:IMO:ORSU", - "AFRO:NIGERIA:IMO:ORU_EAST", - "AFRO:NIGERIA:IMO:ORU_WEST", - "AFRO:NIGERIA:IMO:OWERRI_MUNICIPAL", - "AFRO:NIGERIA:IMO:OWERRI_NORTH", - "AFRO:NIGERIA:IMO:OWERRI_WEST", - "AFRO:NIGERIA:IMO:UNUIMO", - "AFRO:NIGERIA:JIGAWA:AUYO", - "AFRO:NIGERIA:JIGAWA:BABURA", - "AFRO:NIGERIA:JIGAWA:BIRINIWA", - "AFRO:NIGERIA:JIGAWA:BIRNIN_KUDU", - "AFRO:NIGERIA:JIGAWA:BUJI", - "AFRO:NIGERIA:JIGAWA:DUTSE", - "AFRO:NIGERIA:JIGAWA:GAGARAWA", - "AFRO:NIGERIA:JIGAWA:GARKI", - "AFRO:NIGERIA:JIGAWA:GUMEL", - "AFRO:NIGERIA:JIGAWA:GURI", - "AFRO:NIGERIA:JIGAWA:GWARAM", - "AFRO:NIGERIA:JIGAWA:GWIWA", - "AFRO:NIGERIA:JIGAWA:HADEJIA", - "AFRO:NIGERIA:JIGAWA:JAHUN", - "AFRO:NIGERIA:JIGAWA:KAFIN_HAUSA", - "AFRO:NIGERIA:JIGAWA:KAUGAMA", - "AFRO:NIGERIA:JIGAWA:KAZAURE", - "AFRO:NIGERIA:JIGAWA:KIRI_KASAMMA", - "AFRO:NIGERIA:JIGAWA:KIYAWA", - "AFRO:NIGERIA:JIGAWA:MAIGATARI", - "AFRO:NIGERIA:JIGAWA:MALAM_MADORI", - "AFRO:NIGERIA:JIGAWA:MIGA", - "AFRO:NIGERIA:JIGAWA:RINGIM", - "AFRO:NIGERIA:JIGAWA:RONI", - "AFRO:NIGERIA:JIGAWA:SULE_TANKARKAR", - "AFRO:NIGERIA:JIGAWA:TAURA", - "AFRO:NIGERIA:JIGAWA:YANKWASHI", - "AFRO:NIGERIA:KADUNA:BIRNIN_GWARI", - "AFRO:NIGERIA:KADUNA:CHIKUN", - "AFRO:NIGERIA:KADUNA:GIWA", - "AFRO:NIGERIA:KADUNA:IGABI", - "AFRO:NIGERIA:KADUNA:IKARA", - "AFRO:NIGERIA:KADUNA:JABA", - "AFRO:NIGERIA:KADUNA:JEMAA", - "AFRO:NIGERIA:KADUNA:KACHIA", - "AFRO:NIGERIA:KADUNA:KADUNA_NORTH", - "AFRO:NIGERIA:KADUNA:KADUNA_SOUTH", - "AFRO:NIGERIA:KADUNA:KAGARKO", - "AFRO:NIGERIA:KADUNA:KAJURU", - "AFRO:NIGERIA:KADUNA:KAURA", - "AFRO:NIGERIA:KADUNA:KAURU", - "AFRO:NIGERIA:KADUNA:KUBAU", - "AFRO:NIGERIA:KADUNA:KUDAN", - "AFRO:NIGERIA:KADUNA:LERE", - "AFRO:NIGERIA:KADUNA:MAKARFI", - "AFRO:NIGERIA:KADUNA:SABON_GARI", - "AFRO:NIGERIA:KADUNA:SANGA", - "AFRO:NIGERIA:KADUNA:SOBA", - "AFRO:NIGERIA:KADUNA:ZANGON_KATAF", - "AFRO:NIGERIA:KADUNA:ZARIA", - "AFRO:NIGERIA:KANO:AJINGI", - "AFRO:NIGERIA:KANO:ALBASU", - "AFRO:NIGERIA:KANO:BAGWAI", - "AFRO:NIGERIA:KANO:BEBEJI", - "AFRO:NIGERIA:KANO:BICHI", - "AFRO:NIGERIA:KANO:BUNKURE", - "AFRO:NIGERIA:KANO:DALA", - "AFRO:NIGERIA:KANO:DAMBATTA", - "AFRO:NIGERIA:KANO:DAWAKIN_KUDU", - "AFRO:NIGERIA:KANO:DAWAKIN_TOFA", - "AFRO:NIGERIA:KANO:DOGUWA", - "AFRO:NIGERIA:KANO:FAGGE", - "AFRO:NIGERIA:KANO:GABASAWA", - "AFRO:NIGERIA:KANO:GARKO", - "AFRO:NIGERIA:KANO:GARUM_MALLAM", - "AFRO:NIGERIA:KANO:GAYA", - "AFRO:NIGERIA:KANO:GEZAWA", - "AFRO:NIGERIA:KANO:GWALE", - "AFRO:NIGERIA:KANO:GWARZO", - "AFRO:NIGERIA:KANO:KABO", - "AFRO:NIGERIA:KANO:KANO_MUNICIPAL", - "AFRO:NIGERIA:KANO:KARAYE", - "AFRO:NIGERIA:KANO:KIBIYA", - "AFRO:NIGERIA:KANO:KIRU", - "AFRO:NIGERIA:KANO:KUMBOTSO", - "AFRO:NIGERIA:KANO:KUNCHI", - "AFRO:NIGERIA:KANO:KURA", - "AFRO:NIGERIA:KANO:MADOBI", - "AFRO:NIGERIA:KANO:MAKODA", - "AFRO:NIGERIA:KANO:MINJIBIR", - "AFRO:NIGERIA:KANO:NASARAWA", - "AFRO:NIGERIA:KANO:RANO", - "AFRO:NIGERIA:KANO:RIMIN_GADO", - "AFRO:NIGERIA:KANO:ROGO", - "AFRO:NIGERIA:KANO:SHANONO", - "AFRO:NIGERIA:KANO:SUMAILA", - "AFRO:NIGERIA:KANO:TAKAI", - "AFRO:NIGERIA:KANO:TARAUNI", - "AFRO:NIGERIA:KANO:TOFA", - "AFRO:NIGERIA:KANO:TSANYAWA", - "AFRO:NIGERIA:KANO:TUDUN_WADA", - "AFRO:NIGERIA:KANO:UNGOGO", - "AFRO:NIGERIA:KANO:WARAWA", - "AFRO:NIGERIA:KANO:WUDIL", - "AFRO:NIGERIA:KATSINA:BAKORI", - "AFRO:NIGERIA:KATSINA:BATAGARAWA", - "AFRO:NIGERIA:KATSINA:BATSARI", - "AFRO:NIGERIA:KATSINA:BAURE", - "AFRO:NIGERIA:KATSINA:BINDAWA", - "AFRO:NIGERIA:KATSINA:CHARANCHI", - "AFRO:NIGERIA:KATSINA:DANDUME", - "AFRO:NIGERIA:KATSINA:DANJA", - "AFRO:NIGERIA:KATSINA:DAN_MUSA", - "AFRO:NIGERIA:KATSINA:DAURA", - "AFRO:NIGERIA:KATSINA:DUTSI", - "AFRO:NIGERIA:KATSINA:DUTSIN_MA", - "AFRO:NIGERIA:KATSINA:FASKARI", - "AFRO:NIGERIA:KATSINA:FUNTUA", - "AFRO:NIGERIA:KATSINA:INGAWA", - "AFRO:NIGERIA:KATSINA:JIBIA", - "AFRO:NIGERIA:KATSINA:KAFUR", - "AFRO:NIGERIA:KATSINA:KAITA", - "AFRO:NIGERIA:KATSINA:KANKARA", - "AFRO:NIGERIA:KATSINA:KANKIA", - "AFRO:NIGERIA:KATSINA:KATSINA", - "AFRO:NIGERIA:KATSINA:KURFI", - "AFRO:NIGERIA:KATSINA:KUSADA", - "AFRO:NIGERIA:KATSINA:MAIADUA", - "AFRO:NIGERIA:KATSINA:MALUMFASHI", - "AFRO:NIGERIA:KATSINA:MANI", - "AFRO:NIGERIA:KATSINA:MASHI", - "AFRO:NIGERIA:KATSINA:MATAZU", - "AFRO:NIGERIA:KATSINA:MUSAWA", - "AFRO:NIGERIA:KATSINA:RIMI", - "AFRO:NIGERIA:KATSINA:SABUWA", - "AFRO:NIGERIA:KATSINA:SAFANA", - "AFRO:NIGERIA:KATSINA:SANDAMU", - "AFRO:NIGERIA:KATSINA:ZANGO", - "AFRO:NIGERIA:KEBBI:ALEIRO", - "AFRO:NIGERIA:KEBBI:AREWA_DANDI", - "AFRO:NIGERIA:KEBBI:ARGUNGU", - "AFRO:NIGERIA:KEBBI:AUGIE", - "AFRO:NIGERIA:KEBBI:BAGUDO", - "AFRO:NIGERIA:KEBBI:BIRNIN_KEBBI", - "AFRO:NIGERIA:KEBBI:BUNZA", - "AFRO:NIGERIA:KEBBI:DANDI", - "AFRO:NIGERIA:KEBBI:FAKAI", - "AFRO:NIGERIA:KEBBI:GWANDU", - "AFRO:NIGERIA:KEBBI:JEGA", - "AFRO:NIGERIA:KEBBI:KALGO", - "AFRO:NIGERIA:KEBBI:KOKO_BESSE", - "AFRO:NIGERIA:KEBBI:MAIYAMA", - "AFRO:NIGERIA:KEBBI:NGASKI", - "AFRO:NIGERIA:KEBBI:SAKABA", - "AFRO:NIGERIA:KEBBI:SHANGA", - "AFRO:NIGERIA:KEBBI:SURU", - "AFRO:NIGERIA:KEBBI:WASAGU_DANKO", - "AFRO:NIGERIA:KEBBI:YAURI", - "AFRO:NIGERIA:KEBBI:ZURU", - "AFRO:NIGERIA:KOGI:ADAVI", - "AFRO:NIGERIA:KOGI:AJAOKUTA", - "AFRO:NIGERIA:KOGI:ANKPA", - "AFRO:NIGERIA:KOGI:BASSA", - "AFRO:NIGERIA:KOGI:DEKINA", - "AFRO:NIGERIA:KOGI:IBAJI", - "AFRO:NIGERIA:KOGI:IDAH", - "AFRO:NIGERIA:KOGI:IGALAMELA_ODOLU", - "AFRO:NIGERIA:KOGI:IJUMU", - "AFRO:NIGERIA:KOGI:KABBA_BUNU", - "AFRO:NIGERIA:KOGI:KOGI", - "AFRO:NIGERIA:KOGI:LOKOJA", - "AFRO:NIGERIA:KOGI:MOPA_MURO", - "AFRO:NIGERIA:KOGI:OFU", - "AFRO:NIGERIA:KOGI:OGORI_MAGONGO", - "AFRO:NIGERIA:KOGI:OKEHI", - "AFRO:NIGERIA:KOGI:OKENE", - "AFRO:NIGERIA:KOGI:OLAMABOLO", - "AFRO:NIGERIA:KOGI:OMALA", - "AFRO:NIGERIA:KOGI:YAGBA_EAST", - "AFRO:NIGERIA:KOGI:YAGBA_WEST", - "AFRO:NIGERIA:KWARA:ASA", - "AFRO:NIGERIA:KWARA:BARUTEN", - "AFRO:NIGERIA:KWARA:EDU", - "AFRO:NIGERIA:KWARA:EKITI", - "AFRO:NIGERIA:KWARA:IFELODUN", - "AFRO:NIGERIA:KWARA:ILORIN_EAST", - "AFRO:NIGERIA:KWARA:ILORIN_SOUTH", - "AFRO:NIGERIA:KWARA:ILORIN_WEST", - "AFRO:NIGERIA:KWARA:IREPODUN", - "AFRO:NIGERIA:KWARA:ISIN", - "AFRO:NIGERIA:KWARA:KAIAMA", - "AFRO:NIGERIA:KWARA:MORO", - "AFRO:NIGERIA:KWARA:OFFA", - "AFRO:NIGERIA:KWARA:OKE_ERO", - "AFRO:NIGERIA:KWARA:OYUN", - "AFRO:NIGERIA:KWARA:PATEGI", - "AFRO:NIGERIA:LAGOS:AGEGE", - "AFRO:NIGERIA:LAGOS:AJEROMI_IFELODUN", - "AFRO:NIGERIA:LAGOS:ALIMOSHO", - "AFRO:NIGERIA:LAGOS:AMUWO_ODOFIN", - "AFRO:NIGERIA:LAGOS:APAPA", - "AFRO:NIGERIA:LAGOS:BADAGRY", - "AFRO:NIGERIA:LAGOS:EPE", - "AFRO:NIGERIA:LAGOS:ETI_OSA", - "AFRO:NIGERIA:LAGOS:IBEJU_LEKKI", - "AFRO:NIGERIA:LAGOS:IFAKO_IJAYE", - "AFRO:NIGERIA:LAGOS:IKEJA", - "AFRO:NIGERIA:LAGOS:IKORODU", - "AFRO:NIGERIA:LAGOS:KOSOFE", - "AFRO:NIGERIA:LAGOS:LAGOS_ISLAND", - "AFRO:NIGERIA:LAGOS:LAGOS_MAINLAND", - "AFRO:NIGERIA:LAGOS:MUSHIN", - "AFRO:NIGERIA:LAGOS:OJO", - "AFRO:NIGERIA:LAGOS:OSHODI_ISOLO", - "AFRO:NIGERIA:LAGOS:SHOMOLU", - "AFRO:NIGERIA:LAGOS:SURULERE", - "AFRO:NIGERIA:NASARAWA:AKWANGA", - "AFRO:NIGERIA:NASARAWA:AWE", - "AFRO:NIGERIA:NASARAWA:DOMA", - "AFRO:NIGERIA:NASARAWA:KARU", - "AFRO:NIGERIA:NASARAWA:KEANA", - "AFRO:NIGERIA:NASARAWA:KEFFI", - "AFRO:NIGERIA:NASARAWA:KOKONA", - "AFRO:NIGERIA:NASARAWA:LAFIA", - "AFRO:NIGERIA:NASARAWA:NASARAWA", - "AFRO:NIGERIA:NASARAWA:NASARAWA_EGON", - "AFRO:NIGERIA:NASARAWA:OBI", - "AFRO:NIGERIA:NASARAWA:TOTO", - "AFRO:NIGERIA:NASARAWA:WAMBA", - "AFRO:NIGERIA:NIGER:AGAIE", - "AFRO:NIGERIA:NIGER:AGWARA", - "AFRO:NIGERIA:NIGER:BIDA", - "AFRO:NIGERIA:NIGER:BORGU", - "AFRO:NIGERIA:NIGER:BOSSO", - "AFRO:NIGERIA:NIGER:CHANCHAGA", - "AFRO:NIGERIA:NIGER:EDATI", - "AFRO:NIGERIA:NIGER:GBAKO", - "AFRO:NIGERIA:NIGER:GURARA", - "AFRO:NIGERIA:NIGER:KATCHA", - "AFRO:NIGERIA:NIGER:KONTAGORA", - "AFRO:NIGERIA:NIGER:LAPAI", - "AFRO:NIGERIA:NIGER:LAVUN", - "AFRO:NIGERIA:NIGER:MAGAMA", - "AFRO:NIGERIA:NIGER:MARIGA", - "AFRO:NIGERIA:NIGER:MASHEGU", - "AFRO:NIGERIA:NIGER:MOKWA", - "AFRO:NIGERIA:NIGER:MUYA", - "AFRO:NIGERIA:NIGER:PAIKORO", - "AFRO:NIGERIA:NIGER:RAFI", - "AFRO:NIGERIA:NIGER:RIJAU", - "AFRO:NIGERIA:NIGER:SHIRORO", - "AFRO:NIGERIA:NIGER:SULEJA", - "AFRO:NIGERIA:NIGER:TAFA", - "AFRO:NIGERIA:NIGER:WUSHISHI", - "AFRO:NIGERIA:OGUN:ABEOKUTA_NORTH", - "AFRO:NIGERIA:OGUN:ABEOKUTA_SOUTH", - "AFRO:NIGERIA:OGUN:ADO_ODO_OTA", - "AFRO:NIGERIA:OGUN:EWEKORO", - "AFRO:NIGERIA:OGUN:IFO", - "AFRO:NIGERIA:OGUN:IJEBU_EAST", - "AFRO:NIGERIA:OGUN:IJEBU_NORTH", - "AFRO:NIGERIA:OGUN:IJEBU_NORTH_EAST", - "AFRO:NIGERIA:OGUN:IJEBU_ODE", - "AFRO:NIGERIA:OGUN:IKENNE", - "AFRO:NIGERIA:OGUN:IMEKO_AFON", - "AFRO:NIGERIA:OGUN:IPOKIA", - "AFRO:NIGERIA:OGUN:OBAFEMI_OWODE", - "AFRO:NIGERIA:OGUN:ODEDA", - "AFRO:NIGERIA:OGUN:ODOGBOLU", - "AFRO:NIGERIA:OGUN:OGUN_WATERSIDE", - "AFRO:NIGERIA:OGUN:REMO_NORTH", - "AFRO:NIGERIA:OGUN:SHAGAMU", - "AFRO:NIGERIA:OGUN:YEWA_NORTH", - "AFRO:NIGERIA:OGUN:YEWA_SOUTH", - "AFRO:NIGERIA:ONDO:AKOKO_NORTH_EAST", - "AFRO:NIGERIA:ONDO:AKOKO_NORTH_WEST", - "AFRO:NIGERIA:ONDO:AKOKO_SOUTH_EAST", - "AFRO:NIGERIA:ONDO:AKOKO_SOUTH_WEST", - "AFRO:NIGERIA:ONDO:AKURE_NORTH", - "AFRO:NIGERIA:ONDO:AKURE_SOUTH", - "AFRO:NIGERIA:ONDO:ESE_ODO", - "AFRO:NIGERIA:ONDO:IDANRE", - "AFRO:NIGERIA:ONDO:IFEDORE", - "AFRO:NIGERIA:ONDO:ILAJE", - "AFRO:NIGERIA:ONDO:ILE_OLUJI_OKEIGBO", - "AFRO:NIGERIA:ONDO:IRELE", - "AFRO:NIGERIA:ONDO:ODIGBO", - "AFRO:NIGERIA:ONDO:OKITIPUPA", - "AFRO:NIGERIA:ONDO:ONDO_EAST", - "AFRO:NIGERIA:ONDO:ONDO_WEST", - "AFRO:NIGERIA:ONDO:OSE", - "AFRO:NIGERIA:ONDO:OWO", - "AFRO:NIGERIA:OSUN:AIYEDADE", - "AFRO:NIGERIA:OSUN:AIYEDIRE", - "AFRO:NIGERIA:OSUN:ATAKUMOSA_EAST", - "AFRO:NIGERIA:OSUN:ATAKUMOSA_WEST", - "AFRO:NIGERIA:OSUN:BOLUWADURO", - "AFRO:NIGERIA:OSUN:BORIPE", - "AFRO:NIGERIA:OSUN:EDE_NORTH", - "AFRO:NIGERIA:OSUN:EDE_SOUTH", - "AFRO:NIGERIA:OSUN:EGBEDORE", - "AFRO:NIGERIA:OSUN:EJIGBO", - "AFRO:NIGERIA:OSUN:IFEDAYO", - "AFRO:NIGERIA:OSUN:IFELODUN", - "AFRO:NIGERIA:OSUN:IFE_CENTRAL", - "AFRO:NIGERIA:OSUN:IFE_EAST", - "AFRO:NIGERIA:OSUN:IFE_NORTH", - "AFRO:NIGERIA:OSUN:IFE_SOUTH", - "AFRO:NIGERIA:OSUN:ILA", - "AFRO:NIGERIA:OSUN:ILESHA_EAST", - "AFRO:NIGERIA:OSUN:ILESHA_WEST", - "AFRO:NIGERIA:OSUN:IREPODUN", - "AFRO:NIGERIA:OSUN:IREWOLE", - "AFRO:NIGERIA:OSUN:ISOKAN", - "AFRO:NIGERIA:OSUN:IWO", - "AFRO:NIGERIA:OSUN:OBOKUN", - "AFRO:NIGERIA:OSUN:ODO_OTIN", - "AFRO:NIGERIA:OSUN:OLA_OLUWA", - "AFRO:NIGERIA:OSUN:OLORUNDA", - "AFRO:NIGERIA:OSUN:ORIADE", - "AFRO:NIGERIA:OSUN:OROLU", - "AFRO:NIGERIA:OSUN:OSOGBO", - "AFRO:NIGERIA:OYO:AFIJIO", - "AFRO:NIGERIA:OYO:AKINYELE", - "AFRO:NIGERIA:OYO:ATIBA", - "AFRO:NIGERIA:OYO:ATISBO", - "AFRO:NIGERIA:OYO:EGBEDA", - "AFRO:NIGERIA:OYO:IBADAN_NORTH", - "AFRO:NIGERIA:OYO:IBADAN_NORTH_EAST", - "AFRO:NIGERIA:OYO:IBADAN_NORTH_WEST", - "AFRO:NIGERIA:OYO:IBADAN_SOUTH_EAST", - "AFRO:NIGERIA:OYO:IBADAN_SOUTH_WEST", - "AFRO:NIGERIA:OYO:IBARAPA_CENTRAL", - "AFRO:NIGERIA:OYO:IBARAPA_EAST", - "AFRO:NIGERIA:OYO:IBARAPA_NORTH", - "AFRO:NIGERIA:OYO:IDO", - "AFRO:NIGERIA:OYO:IREPO", - "AFRO:NIGERIA:OYO:ISEYIN", - "AFRO:NIGERIA:OYO:ITESIWAJU", - "AFRO:NIGERIA:OYO:IWAJOWA", - "AFRO:NIGERIA:OYO:KAJOLA", - "AFRO:NIGERIA:OYO:LAGELU", - "AFRO:NIGERIA:OYO:OGBOMOSHO_NORTH", - "AFRO:NIGERIA:OYO:OGBOMOSHO_SOUTH", - "AFRO:NIGERIA:OYO:OGO_OLUWA", - "AFRO:NIGERIA:OYO:OLORUNSOGO", - "AFRO:NIGERIA:OYO:OLUYOLE", - "AFRO:NIGERIA:OYO:ONA_ARA", - "AFRO:NIGERIA:OYO:ORELOPE", - "AFRO:NIGERIA:OYO:ORI_IRE", - "AFRO:NIGERIA:OYO:OYO_EAST", - "AFRO:NIGERIA:OYO:OYO_WEST", - "AFRO:NIGERIA:OYO:SAKI_EAST", - "AFRO:NIGERIA:OYO:SAKI_WEST", - "AFRO:NIGERIA:OYO:SURULERE", - "AFRO:NIGERIA:PLATEAU:BARKIN_LADI", - "AFRO:NIGERIA:PLATEAU:BASSA", - "AFRO:NIGERIA:PLATEAU:BOKKOS", - "AFRO:NIGERIA:PLATEAU:JOS_EAST", - "AFRO:NIGERIA:PLATEAU:JOS_NORTH", - "AFRO:NIGERIA:PLATEAU:JOS_SOUTH", - "AFRO:NIGERIA:PLATEAU:KANAM", - "AFRO:NIGERIA:PLATEAU:KANKE", - "AFRO:NIGERIA:PLATEAU:LANGTANG_NORTH", - "AFRO:NIGERIA:PLATEAU:LANGTANG_SOUTH", - "AFRO:NIGERIA:PLATEAU:MANGU", - "AFRO:NIGERIA:PLATEAU:MIKANG", - "AFRO:NIGERIA:PLATEAU:PANKSHIN", - "AFRO:NIGERIA:PLATEAU:QUAAN_PAN", - "AFRO:NIGERIA:PLATEAU:RIYOM", - "AFRO:NIGERIA:PLATEAU:SHENDAM", - "AFRO:NIGERIA:PLATEAU:WASE", - "AFRO:NIGERIA:RIVERS:ABUA_ODUAL", - "AFRO:NIGERIA:RIVERS:AHOADA_EAST", - "AFRO:NIGERIA:RIVERS:AHOADA_WEST", - "AFRO:NIGERIA:RIVERS:AKUKU_TORU", - "AFRO:NIGERIA:RIVERS:ANDONI", - "AFRO:NIGERIA:RIVERS:ASARI_TORU", - "AFRO:NIGERIA:RIVERS:BONNY", - "AFRO:NIGERIA:RIVERS:DEGEMA", - "AFRO:NIGERIA:RIVERS:ELEME", - "AFRO:NIGERIA:RIVERS:EMOHUA", - "AFRO:NIGERIA:RIVERS:ETCHE", - "AFRO:NIGERIA:RIVERS:GOKANA", - "AFRO:NIGERIA:RIVERS:IKWERRE", - "AFRO:NIGERIA:RIVERS:KHANA", - "AFRO:NIGERIA:RIVERS:OBIO_AKPOR", - "AFRO:NIGERIA:RIVERS:OGBA_EGBEMA_NDONI", - "AFRO:NIGERIA:RIVERS:OGU_BOLO", - "AFRO:NIGERIA:RIVERS:OKRIKA", - "AFRO:NIGERIA:RIVERS:OMUMMA", - "AFRO:NIGERIA:RIVERS:OPOBO_NKORO", - "AFRO:NIGERIA:RIVERS:OYIGBO", - "AFRO:NIGERIA:RIVERS:PORT_HARCOURT", - "AFRO:NIGERIA:RIVERS:TAI", - "AFRO:NIGERIA:SOKOTO:BINJI", - "AFRO:NIGERIA:SOKOTO:BODINGA", - "AFRO:NIGERIA:SOKOTO:DANGE_SHUNI", - "AFRO:NIGERIA:SOKOTO:GADA", - 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"AFRO:NIGERIA:ZAMFARA:MARU", - "AFRO:NIGERIA:ZAMFARA:SHINKAFI", - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA", - "AFRO:NIGERIA:ZAMFARA:TSAFE", - "AFRO:NIGERIA:ZAMFARA:ZURMI" - ], - "timevec": [ - 36682.5, - 37047.5, - 37412.5, - 37777.5, - 38142.5, - 38507.5, - 38872.5, - 39237.5, - 39602.5, - 39967.5, - 40332.5, - 40697.5, - 41062.5, - 41427.5, - 41792.5, - 42157.5, - 42522.5, - 42887.5, - 43252.5, - 43617.5 - ] -} \ No newline at end of file diff --git a/model_measles_nga01/Assets/data/NGA_MCV_SIA.json b/model_measles_nga01/Assets/data/NGA_MCV_SIA.json deleted file mode 100644 index ed19ccfb..00000000 --- a/model_measles_nga01/Assets/data/NGA_MCV_SIA.json +++ /dev/null @@ -1,656 +0,0 @@ -{ - "NGA_2005_1": { - "age_max": 5475, - "age_min": 273, - "date": 38669, - "nodes": [ - "AFRO:NIGERIA:ADAMAWA", - "AFRO:NIGERIA:BAUCHI", - "AFRO:NIGERIA:BENUE", - "AFRO:NIGERIA:BORNO", - "AFRO:NIGERIA:FCT_ABUJA", - "AFRO:NIGERIA:GOMBE", - "AFRO:NIGERIA:JIGAWA", - "AFRO:NIGERIA:KADUNA", - 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}, - "NGA_2017_18": { - "age_max": 1825, - "age_min": 273, - "date": 43052, - "nodes": [ - "AFRO:NIGERIA:BORNO" - ], - "targ_frac": 1.0 - }, - "NGA_2017_19": { - "age_max": 1825, - "age_min": 273, - "date": 43050, - "nodes": [ - "AFRO:NIGERIA:GOMBE", - "AFRO:NIGERIA:YOBE" - ], - "targ_frac": 1.0 - }, - "NGA_2017_20": { - "age_max": 1825, - "age_min": 273, - "date": 43053, - "nodes": [ - "AFRO:NIGERIA:TARABA" - ], - "targ_frac": 1.0 - }, - "NGA_2018_21": { - "age_max": 1825, - "age_min": 273, - "date": 43149, - "nodes": [ - "AFRO:NIGERIA:BENUE", - "AFRO:NIGERIA:NASARAWA", - "AFRO:NIGERIA:PLATEAU", - "AFRO:NIGERIA:ABIA", - "AFRO:NIGERIA:ANAMBRA", - "AFRO:NIGERIA:EBONYI", - "AFRO:NIGERIA:IMO", - "AFRO:NIGERIA:ONDO" - ], - "targ_frac": 1.0 - }, - "NGA_2018_22": { - "age_max": 1825, - "age_min": 273, - "date": 43151, - "nodes": [ - "AFRO:NIGERIA:FCT_ABUJA" - ], - "targ_frac": 1.0 - }, - "NGA_2018_23": { - "age_max": 1825, - "age_min": 273, - "date": 43150, - "nodes": [ - "AFRO:NIGERIA:KOGI", - "AFRO:NIGERIA:EDO", - "AFRO:NIGERIA:RIVERS" - ], - "targ_frac": 1.0 - }, - "NGA_2018_24": { - "age_max": 1825, - "age_min": 273, - "date": 43142, - "nodes": [ - "AFRO:NIGERIA:KWARA", - "AFRO:NIGERIA:AKWA_IBOM", - "AFRO:NIGERIA:BAYELSA", - "AFRO:NIGERIA:DELTA", - "AFRO:NIGERIA:EKITI", - "AFRO:NIGERIA:OGUN", - "AFRO:NIGERIA:OSUN" - ], - "targ_frac": 1.0 - }, - "NGA_2018_25": { - "age_max": 1825, - "age_min": 273, - "date": 43126, - "nodes": [ - "AFRO:NIGERIA:NIGER" - ], - "targ_frac": 1.0 - }, - "NGA_2018_26": { - "age_max": 1825, - "age_min": 273, - "date": 43152, - "nodes": [ - "AFRO:NIGERIA:ENUGU" - ], - "targ_frac": 1.0 - }, - "NGA_2018_27": { - "age_max": 1825, - "age_min": 273, - "date": 43144, - "nodes": [ - "AFRO:NIGERIA:CROSS_RIVER" - ], - "targ_frac": 1.0 - }, - "NGA_2018_28": { - "age_max": 1825, - "age_min": 273, - "date": 43156, - "nodes": [ - "AFRO:NIGERIA:LAGOS", - "AFRO:NIGERIA:OYO" - ], - "targ_frac": 1.0 - }, - "NGA_2019_29": { - "age_max": 3650, - "age_min": 182, - "date": 43519, - "nodes": [ - "AFRO:NIGERIA:BORNO:MAIDUGURI" - ], - "targ_frac": 0.5 - }, - "NGA_2019_30": { - "age_max": 730, - "age_min": 365, - "date": 43758, - "nodes": [ - "AFRO:NIGERIA:ABIA", - "AFRO:NIGERIA:ANAMBRA", - "AFRO:NIGERIA:EBONYI", - "AFRO:NIGERIA:ENUGU", - "AFRO:NIGERIA:IMO", - "AFRO:NIGERIA:AKWA_IBOM", - "AFRO:NIGERIA:BAYELSA", - "AFRO:NIGERIA:CROSS_RIVER", - "AFRO:NIGERIA:DELTA", - "AFRO:NIGERIA:EDO", - "AFRO:NIGERIA:RIVERS", - "AFRO:NIGERIA:EKITI", - "AFRO:NIGERIA:LAGOS", - "AFRO:NIGERIA:OGUN", - "AFRO:NIGERIA:ONDO", - "AFRO:NIGERIA:OSUN", - "AFRO:NIGERIA:OYO" - ], - "targ_frac": 1.0 - }, - "NGA_2019_31": { - "age_max": 1825, - "age_min": 273, - "date": 43760, - "nodes": [ - "AFRO:NIGERIA:ADAMAWA", - "AFRO:NIGERIA:BENUE", - "AFRO:NIGERIA:BORNO", - "AFRO:NIGERIA:FCT_ABUJA", - "AFRO:NIGERIA:GOMBE", - "AFRO:NIGERIA:JIGAWA", - "AFRO:NIGERIA:KADUNA", - "AFRO:NIGERIA:KEBBI", - "AFRO:NIGERIA:KWARA", - "AFRO:NIGERIA:PLATEAU", - "AFRO:NIGERIA:TARABA", - "AFRO:NIGERIA:YOBE", - "AFRO:NIGERIA:ZAMFARA" - ], - "targ_frac": 1.0 - }, - "NGA_2019_32": { - "age_max": 1825, - "age_min": 273, - "date": 43782, - "nodes": [ - "AFRO:NIGERIA:BAUCHI" - ], - "targ_frac": 1.0 - }, - "NGA_2019_33": { - "age_max": 1825, - "age_min": 273, - "date": 43780, - "nodes": [ - "AFRO:NIGERIA:KANO" - ], - "targ_frac": 1.0 - }, - "NGA_2019_34": { - "age_max": 1825, - "age_min": 273, - "date": 43774, - "nodes": [ - "AFRO:NIGERIA:KATSINA", - "AFRO:NIGERIA:NASARAWA" - ], - "targ_frac": 1.0 - }, - "NGA_2019_35": { - "age_max": 1825, - "age_min": 273, - "date": 43764, - "nodes": [ - "AFRO:NIGERIA:SOKOTO" - ], - "targ_frac": 1.0 - }, - "NGA_2020_36": { - "age_max": 1825, - "age_min": 273, - "date": 44100, - "nodes": [ - "AFRO:NIGERIA:NIGER" - ], - "targ_frac": 1.0 - }, - "NGA_2020_37": { - "age_max": 1825, - "age_min": 273, - "date": 44094, - "nodes": [ - "AFRO:NIGERIA:KOGI" - ], - "targ_frac": 1.0 - }, - "NGA_2021_38": { - "age_max": 1825, - "age_min": 273, - "date": 44493, - "nodes": [ - "AFRO:NIGERIA:ABIA", - "AFRO:NIGERIA:IMO" - ], - "targ_frac": 1.0 - }, - "NGA_2021_39": { - "age_max": 1825, - "age_min": 273, - "date": 44496, - "nodes": [ - "AFRO:NIGERIA:BAYELSA", - "AFRO:NIGERIA:KEBBI", - "AFRO:NIGERIA:SOKOTO" - ], - "targ_frac": 1.0 - }, - "NGA_2021_40": { - "age_max": 1825, - "age_min": 273, - "date": 44489, - "nodes": [ - "AFRO:NIGERIA:BORNO" - ], - "targ_frac": 1.0 - }, - "NGA_2021_41": { - "age_max": 1825, - "age_min": 273, - "date": 44503, - "nodes": [ - "AFRO:NIGERIA:EBONYI" - ], - "targ_frac": 1.0 - }, - "NGA_2021_42": { - "age_max": 1825, - "age_min": 273, - "date": 44487, - "nodes": [ - "AFRO:NIGERIA:KADUNA", - "AFRO:NIGERIA:TARABA", - "AFRO:NIGERIA:YOBE" - ], - "targ_frac": 1.0 - }, - "NGA_2021_43": { - "age_max": 1825, - "age_min": 273, - "date": 44490, - "nodes": [ - "AFRO:NIGERIA:KANO" - ], - "targ_frac": 1.0 - }, - "NGA_2021_44": { - "age_max": 1825, - "age_min": 273, - "date": 44485, - "nodes": [ - "AFRO:NIGERIA:KATSINA" - ], - "targ_frac": 1.0 - }, - "NGA_2021_45": { - "age_max": 1825, - "age_min": 273, - "date": 44510, - "nodes": [ - "AFRO:NIGERIA:KWARA" - ], - "targ_frac": 1.0 - }, - "NGA_2022_46": { - "age_max": 1825, - "age_min": 273, - "date": 44705, - "nodes": [ - "AFRO:NIGERIA:LAGOS", - "AFRO:NIGERIA:OGUN", - "AFRO:NIGERIA:GOMBE" - ], - "targ_frac": 1.0 - } -} \ No newline at end of file diff --git a/model_measles_nga01/Assets/python/aux_demo_calc.py b/model_measles_nga01/Assets/python/aux_demo_calc.py deleted file mode 100644 index 5c8b1f22..00000000 --- a/model_measles_nga01/Assets/python/aux_demo_calc.py +++ /dev/null @@ -1,77 +0,0 @@ -#******************************************************************************** -# -# Steady-state age distribution calculator (a.k.a. magic) -# -#******************************************************************************** - -import os, sys - -import numpy as np -import scipy.sparse as sp -import scipy.sparse.linalg as la -import scipy.optimize as opt - -#******************************************************************************** - -def demoCalc_AgeDist(bval, mvecX_in, mvecY): - - # Control parameters - max_yr = 120 - bin_size = 30 - day_to_year = 365 - - # Age brackets - avecY = np.arange(0,max_yr*day_to_year,bin_size)-1 - - # Mortality sampling - mvecX = [-1] + mvecX_in + [max_yr*day_to_year+1] - mvecY = [mvecY[0]] + mvecY + [mvecY[-1]] - mX = np.arange(0,max_yr*day_to_year,bin_size) - mX[0] = 1 - mval = 1.0 - np.interp(mX,xp=mvecX,fp=mvecY) - r_n = mval.size - - # Matrix construction - BmatRC = (np.zeros(r_n), np.arange(r_n)) - Bmat = sp.csr_matrix(([bval*bin_size]*r_n, BmatRC), shape=(r_n,r_n)) - Mmat = sp.spdiags(mval[:-1]**bin_size, -1, r_n, r_n) - Dmat = Bmat+Mmat - - # Math - (gR,popVec) = la.eigs(Dmat,k=1,sigma=1.0) - gR = np.abs(gR**(float(day_to_year)/float(bin_size))) - popVec = np.abs(popVec)/np.sum(np.abs(popVec)) - - # Apply seasonal forcing - mVecR = [ -2.0, 30.5, 30.6, 60.5, 60.6, 91.5, 91.6,121.5, - 121.6,152.5,152.6,183.5,183.6,213.5,213.6,244.5, - 245.6,274.5,274.6,305.5,305.6,333.5,335.6,364.5] - fVec=(12*[1.0]) # No seasonal forcing - fVec = np.flipud([val for val in fVec for _ in (0,1)]) - wfVec = np.array([np.mean(np.interp(np.mod(range(val+1,val+31),365), - xp=mVecR,fp=fVec)) for val in avecY]).reshape(-1,1) - popVec = popVec*wfVec/np.sum(popVec*wfVec) - - # Age sampling - avecY[0] = 0 - avecX = np.clip(np.around(np.cumsum(popVec),decimals=7),0.0, 1.0) - avecX = np.insert(avecX,0,np.zeros(1)) - - return ((gR.tolist())[0],(avecX[:-1]).tolist(),(avecY).tolist()) - -#******************************************************************************** - -# Calculated haversine distance -def demoCalc_hDist(lat1, long1, lat2, long2): - - lat1 = np.pi*lat1 /180.0 - lat2 = np.pi*lat2 /180.0 - long1 = np.pi*long1/180.0 - long2 = np.pi*long2/180.0 - - delt = 6371*2*np.arcsin(np.sqrt(np.sin(0.5*lat2-0.5*lat1)**2 + - np.cos(lat2)*np.cos(lat1)*np.sin(0.5*long2-0.5*long1)**2)) - - return delt - -#******************************************************************************* \ No newline at end of file diff --git a/model_measles_nga01/Assets/python/aux_obj_calc.py b/model_measles_nga01/Assets/python/aux_obj_calc.py deleted file mode 100644 index 3f4cb820..00000000 --- a/model_measles_nga01/Assets/python/aux_obj_calc.py +++ /dev/null @@ -1,74 +0,0 @@ -#******************************************************************************* -# -#******************************************************************************* - -import numpy as np - -#******************************************************************************* - -EPS = np.finfo(float).eps - -#******************************************************************************* - -def norpois_vec(yobs, ysim, yscal=1.0): - - lliktot = 0.0 - Gtot = 0.0 - Htot = 0.0 - mlam = 0.1 - - for k1 in range(len(yobs)): - yobsval = float(yobs[k1]) - ysimval = float(ysim[k1]) - llik = 0.0 - G = 0.0 - H = 0.0 - - if(yobsval>0): - llik = yobsval*np.log((yscal*ysimval + mlam)/yobsval) \ - - yscal*ysimval - mlam + yobsval - 0.5*np.log(2.0*np.pi*yobsval) - G = yobsval - ysimval*yscal - H = - ysimval*yscal - elif(yobs==0): - llik = -ysimval*yscal - mlam - G = -ysimval*yscal - H = -ysimval*yscal - - lliktot = lliktot + llik - Gtot = Gtot + G - Htot = Htot + H - - if(Htot != 0.0): - sstptot = Gtot/Htot - else: - sstptot = 0.0; - - return (lliktot,sstptot) - -#******************************************************************************* - -def norpois_opt(yobs, ysim): - - LLret = 0 - SFvec = [] - - for k1 in range(len(yobs)): - lyscal = 0.0 - yobs = yobs[k1] - - while(True): - (lliktot,sstptot) = norpois_vec(yobs, ysim, np.exp(lyscal)) - - if(abs(sstptot) > 5.0): - sstptot = np.sign(sstptot)*5.0 - - lyscal = lyscal - sstptot - if(abs(sstptot) < 1.0e-4): - break - - LLret = LLret + lliktot - SFvec.append(np.exp(lyscal)) - - return (LLret,SFvec) - -#******************************************************************************* \ No newline at end of file diff --git a/model_measles_nga01/Assets/python/builder_campaign.py b/model_measles_nga01/Assets/python/builder_campaign.py deleted file mode 100644 index 1c52ba49..00000000 --- a/model_measles_nga01/Assets/python/builder_campaign.py +++ /dev/null @@ -1,252 +0,0 @@ -#******************************************************************************** -# -# Builds a campaign file for input to the DTK. -# -#******************************************************************************** - -import os, sys, json - -import global_data as gdata - -import numpy as np - -import emod_api.campaign as camp_module - -from emod_api import schema_to_class as s2c -from emod_api.interventions import utils - -#******************************************************************************** - -def campaignBuilder(): - - # Note: campaign module itself is the file object; no Campaign class right now - CAMP_FILENAME = 'campaign.json' - BASE_YEAR = gdata.base_year - - # ***** Get variables for this simulation ***** - START_YEAR = gdata.var_params['start_year'] - - PEAK_SIZE = gdata.var_params['R0_peak_magnitude'] - PEAK_TIME = gdata.var_params['R0_peak_day'] - PEAK_WIDE = gdata.var_params['R0_peak_width'] - - - # ***** Events ***** - - node_dict = gdata.demog_node - node_opts = list(node_dict.keys()) - - - start_day = 365.0*(START_YEAR-BASE_YEAR) - - # Add MCV1 RI - mcv1_dat = np.loadtxt(os.path.join('Assets','data', 'NGA_MCV1.csv'), delimiter=',') - with open(os.path.join('Assets','data', 'NGA_MCV1.json')) as fid01: - mcv1_dict = json.load(fid01) - - time_vec = np.array(mcv1_dict['timevec']) - start_day - for k1 in range(len(mcv1_dict['namevec'])): - reg_name = mcv1_dict['namevec'][k1] - mcv1_vec = mcv1_dat[k1,:] - node_list = list() - - for node_name in node_opts: - if((node_name == reg_name) or (node_name.startswith(reg_name+':'))): - node_list.append(node_dict[node_name]) - - if(not node_list): - continue - - if(np.amin(time_vec) <= 0.0): - init_mcv1 = np.interp(0.0, time_vec, mcv1_vec) - else: - init_mcv1 = np.mean(mcv1_vec[:3]) - - time_list = [0.0] + (time_vec[time_vec>0.0]).tolist() + [365.0*100] - mcv1_list = [init_mcv1] + (mcv1_vec[time_vec>0.0]).tolist() + [np.mean(mcv1_vec[-3:])] - - pdict = {'startday': start_day , - 'nodes': node_list , - 'x_vals': time_list , - 'y_vals': mcv1_list } - - camp_module.add(IV_MCV1(pdict)) - - - # Add MCV SIAs - with open(os.path.join('Assets','data','NGA_MCV_SIA.json')) as fid01: - dict_sia = json.load(fid01) - - for sia_name in dict_sia: - sia_obj = dict_sia[sia_name] - start_val = sia_obj['date'] - if(start_val < start_day): - continue - - SIA_COVER = 0.50 - age_min = sia_obj['age_min'] - age_max = sia_obj['age_max'] - targ_frac = sia_obj['targ_frac'] - node_list = list() - for targ_val in sia_obj['nodes']: - for node_name in node_opts: - if((node_name == targ_val) or (node_name.startswith(targ_val+':'))): - node_list.append(node_dict[node_name]) - - if(not node_list): - continue - - pdict = {'startday': start_val , - 'nodes': node_list , - 'agemin': age_min , - 'agemax': age_max , - 'coverage': SIA_COVER*targ_frac } - - camp_module.add(IV_SIA(pdict)) - - - # Add infectivity seasonality - all_nodes = [node_dict[val] for val in node_opts] - pdict = {'startday': start_day , - 'nodes': all_nodes , - 'peak_size': PEAK_SIZE , - 'peak_wide': PEAK_WIDE , - 'peak_time': PEAK_TIME } - - camp_module.add(IV_BumpR0(pdict)) - - - # ***** End file construction ***** - camp_module.save(filename=CAMP_FILENAME) - - # Save filename to global data for use in other functions - gdata.camp_file = CAMP_FILENAME - - - return None - -#******************************************************************************** - -# Routine immunization for MCV1 -def IV_MCV1(params=dict()): - - SCHEMA_PATH = gdata.schema_path - - camp_event = s2c.get_class_with_defaults('CampaignEvent', SCHEMA_PATH) - camp_coord = s2c.get_class_with_defaults('StandardEventCoordinator', SCHEMA_PATH) - camp_iv01 = s2c.get_class_with_defaults('NodeLevelHealthTriggeredIVScaleUpSwitch', SCHEMA_PATH) - camp_iv02 = s2c.get_class_with_defaults('DelayedIntervention', SCHEMA_PATH) - camp_iv03 = s2c.get_class_with_defaults('Vaccine', SCHEMA_PATH) - - node_set = utils.do_nodes(SCHEMA_PATH, params['nodes']) - - camp_event.Event_Coordinator_Config = camp_coord - camp_event.Start_Day = params['startday'] - camp_event.Nodeset_Config = node_set - - camp_coord.Intervention_Config = camp_iv01 - - camp_iv01.Actual_IndividualIntervention_Config = camp_iv02 - camp_iv01.Demographic_Coverage = 1.0 # Required, not used - camp_iv01.Trigger_Condition_List = ['Births'] - camp_iv01.Demographic_Coverage_Time_Profile = 'InterpolationMap' - camp_iv01.Coverage_vs_Time_Interpolation_Map.Times = params['x_vals'] - camp_iv01.Coverage_vs_Time_Interpolation_Map.Values = params['y_vals'] - camp_iv01.Not_Covered_IndividualIntervention_Configs = [] # Breaks if not present - - camp_iv02.Actual_IndividualIntervention_Configs = [camp_iv03] - camp_iv02.Delay_Period_Distribution = "GAUSSIAN_DISTRIBUTION" - camp_iv02.Delay_Period_Gaussian_Mean = 300.0 - camp_iv02.Delay_Period_Gaussian_Std_Dev = 90.0 - - camp_iv03.Acquire_Config.Initial_Effect = 1.0 - - return camp_event - -#******************************************************************************** - -# SIAs for MCV -def IV_SIA(params=dict()): - - SCHEMA_PATH = gdata.schema_path - - camp_event = s2c.get_class_with_defaults('CampaignEvent', SCHEMA_PATH) - camp_coord = s2c.get_class_with_defaults('StandardEventCoordinator', SCHEMA_PATH) - camp_iv01 = s2c.get_class_with_defaults('DelayedIntervention', SCHEMA_PATH) - camp_iv02 = s2c.get_class_with_defaults('Vaccine', SCHEMA_PATH) - - node_set = utils.do_nodes(SCHEMA_PATH, params['nodes']) - - camp_event.Event_Coordinator_Config = camp_coord - camp_event.Start_Day = params['startday'] - camp_event.Nodeset_Config = node_set - - camp_coord.Intervention_Config = camp_iv01 - camp_coord.Target_Demographic = 'ExplicitAgeRanges' - camp_coord.Demographic_Coverage = params['coverage'] - camp_coord.Target_Age_Min = params['agemin']/365.0 - camp_coord.Target_Age_Max = params['agemax']/365.0 - - camp_iv01.Actual_IndividualIntervention_Configs = [camp_iv02] - camp_iv01.Delay_Period_Distribution = "UNIFORM_DISTRIBUTION" - camp_iv01.Delay_Period_Min = 0.0 - camp_iv01.Delay_Period_Max = 14.0 - - camp_iv02.Acquire_Config.Initial_Effect = 1.0 - camp_iv02.Vaccine_Take = 0.95 - - return camp_event - -#******************************************************************************** - -# Seasonal infectivity forcing; boxcar -def IV_BumpR0(params=dict()): - - SCHEMA_PATH = gdata.schema_path - - camp_event = s2c.get_class_with_defaults('CampaignEvent', SCHEMA_PATH) - camp_coord = s2c.get_class_with_defaults('StandardEventCoordinator', SCHEMA_PATH) - camp_iv01 = s2c.get_class_with_defaults('NodeInfectivityMult', SCHEMA_PATH) - - node_set = utils.do_nodes(SCHEMA_PATH, params['nodes']) - - camp_event.Event_Coordinator_Config = camp_coord - camp_event.Start_Day = params['startday'] - camp_event.Nodeset_Config = node_set - - camp_coord.Intervention_Config = camp_iv01 - camp_coord.Number_Repetitions = -1 # Repeat forever - camp_coord.Timesteps_Between_Repetitions = 365.0 - - init_off = params['startday'] %365.0 - peak_wid = params['peak_wide'] - x_peak = (params['peak_time']-init_off)%365.0 - y_peak = params['peak_size'] - x_init = (x_peak -peak_wid)%365.0 - x_ends = (x_peak +peak_wid)%365.0 - - if(peak_wid > x_peak): - dx_val = x_peak - elif(peak_wid > 365.0-x_peak): - dx_val = 365.0-x_peak - else: - dx_val = peak_wid - - #y_bound = y_peak - (y_peak-1)/peak_wid * dx_val - y_bound = y_peak - (y_peak-1)*(dx_val>=peak_wid) - - xyvals = set([( 0.0, y_bound), - (x_init, 1.0), - (x_init+0.1, y_peak), - (x_peak, y_peak), - (x_ends-0.1, y_peak), - (x_ends, 1.0), - ( 365.0, y_bound)]) - xyvals = sorted(list(xyvals), key=lambda val: val[0]) - - camp_iv01.Multiplier_By_Duration.Times = [val[0] for val in xyvals] - camp_iv01.Multiplier_By_Duration.Values = [val[1] for val in xyvals] - - return camp_event - -#******************************************************************************** diff --git a/model_measles_nga01/Assets/python/builder_config.py b/model_measles_nga01/Assets/python/builder_config.py deleted file mode 100644 index ad5e29ab..00000000 --- a/model_measles_nga01/Assets/python/builder_config.py +++ /dev/null @@ -1,199 +0,0 @@ -#******************************************************************************** -# -# Builds a config file for input to the DTK. -# -#******************************************************************************** - -import os, sys, json - -import global_data as gdata - -import numpy as np - -from emod_api.config import default_from_schema_no_validation as dfs - -#******************************************************************************** - -def max_coeff_ref(exp_vals): - - if(np.min(exp_vals)<0.0 or np.max(exp_vals)>8.0): - raise Exception('Network exponent out of range.') - - x_ref = np.array([ 0.0, 0.25, 0.50, 0.75, - 1.0, 2.0, 3.0, 4.0, - 5.0, 6.0, 7.0, 8.0 ]) - y_ref = np.array([-2.794, -1.298, 0.155, 1.528, - 2.797, 6.924, 9.774, 12.22, - 14.44, 16.56, 18.65, 20.75]) - - max_coeffs = np.interp(exp_vals, x_ref, y_ref).tolist() - - return max_coeffs - -#******************************************************************************** - -def update_config_obj(config): - - MAX_CLOCK = gdata.max_clock - BASE_YEAR = gdata.base_year - TIME_STEP = gdata.t_step_days - - - # ***** Get variables for this simulation ***** - R0 = gdata.var_params['R0'] - - NI_LN_MULT = gdata.var_params['net_inf_ln_mult'] - NI_POWER = gdata.var_params['net_inf_power'] - NI_MAXFRAC = gdata.var_params['net_inf_maxfrac'] - - RUN_NUM = gdata.var_params['run_number'] - - START_YEAR = gdata.var_params['start_year'] - RUN_YEARS = gdata.var_params['run_years'] - - AGENT_RATE = gdata.var_params['agent_rate'] - - CORR_ACQ_TRANS = gdata.var_params['corr_acq_trans'] - - - # ***** Random number seed **** - config.parameters.Run_Number = RUN_NUM - - - # ***** Time ***** - config.parameters.Start_Time = 365.0*(START_YEAR-BASE_YEAR) - config.parameters.Simulation_Duration = 365.0*RUN_YEARS + 1.0 - config.parameters.Simulation_Timestep = TIME_STEP - - config.parameters.Enable_Termination_On_Total_Wall_Time = 1 - config.parameters.Wall_Time_Maximum_In_Minutes = MAX_CLOCK - - - # ***** Intrahost ***** - MEAN_INF_DUR = 18.0 - config.parameters.Base_Infectivity_Distribution = 'GAMMA_DISTRIBUTION' - config.parameters.Base_Infectivity_Scale = R0/MEAN_INF_DUR - config.parameters.Base_Infectivity_Shape = 1.0 - - config.parameters.Incubation_Period_Distribution = 'GAMMA_DISTRIBUTION' - config.parameters.Incubation_Period_Scale = 1.0 - config.parameters.Incubation_Period_Shape = 3.5 - - config.parameters.Infectious_Period_Distribution = 'GAUSSIAN_DISTRIBUTION' - config.parameters.Infectious_Period_Gaussian_Mean = MEAN_INF_DUR - config.parameters.Infectious_Period_Gaussian_Std_Dev = 2.0 - - config.parameters.Enable_Nonuniform_Shedding = 1.0 - config.parameters.Shedding_Distribution_Alpha = 10.0 - config.parameters.Shedding_Distribution_Beta = 10.0 - - config.parameters.Symptomatic_Infectious_Offset = 11.0 - - config.parameters.Enable_Disease_Mortality = 0 - - config.parameters.Acquisition_Transmission_Correlation = CORR_ACQ_TRANS - - - # ***** Immunity ***** - config.parameters.Enable_Immunity = 1 - config.parameters.Enable_Immune_Decay = 0 - - config.parameters.Post_Infection_Acquisition_Multiplier = 0.0 - config.parameters.Post_Infection_Mortality_Multiplier = 0.0 - config.parameters.Post_Infection_Transmission_Multiplier = 0.0 - - config.parameters.Maternal_Acquire_Config.Initial_Effect = 1.0 - config.parameters.Maternal_Acquire_Config.Enable_Box_Duration_Distribution = 1 - config.parameters.Maternal_Acquire_Config.Box_Duration_Distribution = 'GAUSSIAN_DISTRIBUTION' - config.parameters.Maternal_Acquire_Config.Box_Duration_Gaussian_Mean = 120.0 - config.parameters.Maternal_Acquire_Config.Box_Duration_Gaussian_Std_Dev = 67.0 - - config.parameters.Enable_Initial_Susceptibility_Distribution = 1 - config.parameters.Susceptibility_Initialization_Distribution_Type= 'DISTRIBUTION_COMPLEX' - - - # ***** Interventions ***** - config.parameters.Enable_Interventions = 1 - config.parameters.Campaign_Filename = gdata.camp_file - - - # ***** Network Infectivity ***** - ni_coeff = np.exp(max_coeff_ref(NI_POWER) + NI_LN_MULT) - - config.parameters.Enable_Network_Infectivity = 1 - - config.parameters.Network_Infectivity_Coefficient = [ni_coeff] - config.parameters.Network_Infectivity_Exponent = [NI_POWER] - config.parameters.Network_Infectivity_Max_Export_Frac = NI_MAXFRAC - config.parameters.Network_Infectivity_Min_Distance = 1 - - config.parameters.Enable_Infectivity_Reservoir = 1 - - - # ***** Adapted sampling ***** - config.parameters.Individual_Sampling_Type = 'ADAPTED_SAMPLING_BY_IMMUNE_STATE' - config.parameters.Min_Node_Population_Samples = gdata.demog_min_pop - config.parameters.Base_Individual_Sample_Rate = 1.0/AGENT_RATE - config.parameters.Relative_Sample_Rate_Immune = 0.01 - config.parameters.Immune_Threshold_For_Downsampling = 1.0e-5 - config.parameters.Immune_Downsample_Min_Age = 365.0 - - - # ***** Demographic parameters ***** - config.parameters.Enable_Demographics_Builtin = 0 - - config.parameters.Enable_Vital_Dynamics = 1 - config.parameters.Enable_Birth = 1 - config.parameters.Birth_Rate_Dependence = 'POPULATION_DEP_RATE' - config.parameters.Enable_Aging = 1 - config.parameters.Age_Initialization_Distribution_Type = 'DISTRIBUTION_COMPLEX' - config.parameters.Enable_Natural_Mortality = 1 - config.parameters.Death_Rate_Dependence = 'NONDISEASE_MORTALITY_BY_AGE_AND_GENDER' - - config.parameters.Enable_Acquisition_Heterogeneity = 1 - - config.parameters.Demographics_Filenames = gdata.demog_files - - - # ***** Reporting ***** - START_LOG_TIME = 365.0*(START_YEAR-BASE_YEAR+3.0) - gdata.start_log_time = START_LOG_TIME - - config.parameters.Enable_Default_Reporting = 1 - config.parameters.Enable_Demographics_Reporting = 1 - config.parameters.Enable_Event_DB = 1 - config.parameters.SQL_Start_Time = START_LOG_TIME - config.parameters.SQL_Events = ["NewlySymptomatic"] - - config.parameters.Enable_Spatial_Output = 0 - - config.parameters.Custom_Reports_Filename = gdata.reports_file - - - return config - -#******************************************************************************** - -def configBuilder(): - - FILE_CONFIG = 'config.json' - SCHEMA_PATH = gdata.schema_path - - default_conf = dfs.get_default_config_from_schema(SCHEMA_PATH,as_rod=True) - - # Probably ought to be an emod-api call - config_obj = update_config_obj(default_conf); - config_obj.parameters.finalize() - - # Need to get these listed in the schema - #config_obj.parameters['logLevel_Memory'] = 'DEBUG' - config_obj.parameters['logLevel_StandardEventCoordinator'] = 'WARNING' - config_obj.parameters['logLevel_SimulationEventContext'] = 'WARNING' - - with open(FILE_CONFIG, 'w') as fid01: - json.dump(config_obj, fid01, sort_keys=True, indent=4) - - - return FILE_CONFIG - -#******************************************************************************** \ No newline at end of file diff --git a/model_measles_nga01/Assets/python/builder_demographics.py b/model_measles_nga01/Assets/python/builder_demographics.py deleted file mode 100644 index 06a7d253..00000000 --- a/model_measles_nga01/Assets/python/builder_demographics.py +++ /dev/null @@ -1,296 +0,0 @@ -#******************************************************************************** -# -# Builds a demographics.json file to be used as input to the DTK. -# -#******************************************************************************** - -import os, sys, json - -import global_data as gdata - -import numpy as np -import scipy.optimize as opt - -from refdat_population_admin02 import data_dict as dict_pop_admin02 -from refdat_area_admin02 import data_dict as dict_area_admin02 -from refdat_location_admin02 import data_dict as dict_longlat_admin02 - -from refdat_population_100km import data_dict as dict_pop_100km -from refdat_area_100km import data_dict as dict_area_100km -from refdat_location_100km import data_dict as dict_longlat_100km - -from refdat_alias import data_dict as dict_alias -from refdat_birthrate import data_dict as dict_birth -from refdat_deathrate import data_dict as dict_death - -from aux_demo_calc import demoCalc_AgeDist - -from emod_api.demographics.Demographics import Demographics, \ - DemographicsOverlay -from emod_api.demographics.Node import Node -from emod_api.demographics.PropertiesAndAttributes import IndividualAttributes, \ - NodeAttributes - -#******************************************************************************** - -def demographicsBuilder(): - - DEMOG_FILENAME = 'demographics.json' - REF_NAME = 'measles-custom' - GEOG_LIST = ['AFRO:NIGERIA:NORTH_CENTRAL', - 'AFRO:NIGERIA:NORTH_EAST', - 'AFRO:NIGERIA:NORTH_WEST'] - - - # ***** Get variables for this simulation ***** - START_YEAR = gdata.var_params['start_year'] - - SUB_LGA = gdata.var_params['use_10k_res'] - - R0 = gdata.var_params['R0'] - LOG10_IMP = gdata.var_params['log10_import_rate'] - IND_RISK_VAR = gdata.var_params['ind_variance_risk'] - - - PATH_OVERLAY = 'demog_overlay' - if(not os.path.exists(PATH_OVERLAY)): - os.mkdir(PATH_OVERLAY) - - - # ***** Populate nodes in primary file ***** - - # Add nodes - node_list = list() - - if(SUB_LGA): - dict_pop = dict_pop_100km - dict_area = dict_area_100km - dict_longlat = dict_longlat_100km - else: - dict_pop = dict_pop_admin02 - dict_area = dict_area_admin02 - dict_longlat = dict_longlat_admin02 - - # Remove location aliases from geography list - for rname in GEOG_LIST: - if(rname in dict_alias): - for rname_val in dict_alias[rname]: - GEOG_LIST.append(rname_val) - - node_id = 0 - ipop_time = dict() - imp_case = np.power(10.0, LOG10_IMP) - - for loc_name in dict_pop: - if(any([loc_name.startswith(val) for val in GEOG_LIST])): - ipop_time[loc_name] = dict_pop[loc_name][1] + 0.5 - node_id = node_id + 1 - - node_obj = Node(lat = dict_longlat[loc_name][1], - lon = dict_longlat[loc_name][0], - pop = dict_pop[loc_name][0], - name = loc_name, - forced_id = node_id, - area = dict_area[loc_name]) - - imp_rate = imp_case*dict_pop[loc_name][0]/1.0e5 - node_obj.node_attributes.extra_attributes = {'InfectivityReservoirSize': imp_rate} - - node_list.append(node_obj) - - - # ***** Write node name bookkeeping ***** - - nname_dict = {node_obj.name: node_obj.forced_id for node_obj in node_list} - node_rep_list = sorted([nname for nname in dict_pop_admin02.keys() if - any([nname.startswith(val+':') or val == nname for val in GEOG_LIST])]) - rep_groups = {nrep:[nname_dict[val] for val in nname_dict.keys() if val.startswith(nrep+':') or val == nrep] - for nrep in node_rep_list} - - gdata.demog_node_map = rep_groups - - # ***** Prune small nodes ***** - - rev_node_list = [node_obj for node_obj in node_list - if node_obj.node_attributes.initial_population >= gdata.demog_min_pop] - node_list = rev_node_list - node_name_dict = {node_obj.name: node_obj.forced_id for node_obj in node_list} - - gdata.demog_node = node_name_dict - gdata.max_node_id = max([node_name_dict[val] for val in node_name_dict]) - - - # ***** Create primary file ***** - - demog_obj = Demographics(nodes=node_list, idref=REF_NAME) - - # Save filename to global data for use in other functions - gdata.demog_files.append(DEMOG_FILENAME) - - - # ***** Update defaults in primary file **** - - demog_obj.raw['Defaults']['NodeAttributes'].clear() - nadict = dict() - nadict['InfectivityOverdispersion'] = 0.0 - nadict['InfectivityMultiplier'] = 1.0 - demog_obj.raw['Defaults']['NodeAttributes'].update(nadict) - - demog_obj.raw['Defaults']['IndividualAttributes'].clear() - iadict = dict() - iadict['AcquisitionHeterogeneityVariance'] = IND_RISK_VAR - demog_obj.raw['Defaults']['IndividualAttributes'].update(iadict) - - - # ***** Populate vital dynamics overlays ***** - - # Remove mortality aliases from ref data - ddeath_keys = list(dict_death.keys()) - for rname in ddeath_keys: - if(rname in dict_alias): - for rname_val in dict_alias[rname]: - dict_death[rname_val] = dict_death[rname] - dict_death.pop(rname) - - # Remove birth aliases from ref data - dbirth_keys = list(dict_birth.keys()) - for rname in dict_birth: - if(rname in dict_alias): - for rname_val in dict_alias[rname]: - dict_birth[rname_val] = dict_birth[rname] - dict_birth.pop(rname) - - # Create list of vital dynamics overlays - vd_over_list = list() - for node_dict in demog_obj.nodes: - node_name = node_dict.name - node_id = node_dict.forced_id - node_birth = None - node_death = None - - for rname in dict_death: - if(node_name.startswith(rname+':') or node_name==rname): - if(node_death is None): - node_death = np.array(dict_death[rname]) - else: - raise Exception("Duplicate mortality data") - - for rname in dict_birth: - if(node_name.startswith(rname+':') or node_name==rname): - if(node_birth is None): - node_birth = np.array(dict_birth[rname]) - else: - raise Exception("Duplicate birthrate data") - - match_found = False - for data_tup in vd_over_list: - if(np.all(np.equal(data_tup[0],node_birth)) and - np.all(np.equal(data_tup[1],node_death))): - data_tup[2].append(node_id) - match_found = True - break - - if(not match_found): - vd_over_list.append((node_birth,node_death,[node_id])) - - - # ***** Write vital dynamics and susceptibility initialization overlays ***** - - for k1 in range(len(vd_over_list)): - data_tup = vd_over_list[k1] - over_set = dict() - - # Age initialization magic - brth_rate = data_tup[0].item() - d_rate_y = data_tup[1].tolist() - d_rate_x = dict_death['BIN_EDGES'] - force_v = 12*[1.0] # No seasonal forcing - (grow_rate, age_x, age_y) = demoCalc_AgeDist(brth_rate,d_rate_x,d_rate_y) - - # Update initial node populations - for node_dict in demog_obj.nodes: - node_name = node_dict.name - node_id = node_dict.forced_id - if(node_id in data_tup[2]): - ref_year = ipop_time[loc_name] - mult_fac = grow_rate**(START_YEAR-ref_year) - new_pop = int(mult_fac * node_dict.node_attributes.initial_population) - node_dict.node_attributes.initial_population = new_pop - - # Vital dynamics overlays - dover_obj = DemographicsOverlay() - dover_obj.node_attributes = NodeAttributes() - dover_obj.individual_attributes = IndividualAttributes() - dover_obj.individual_attributes.age_distribution = IndividualAttributes.AgeDistribution() - dover_obj.individual_attributes.mortality_distribution = IndividualAttributes.MortalityDistribution() - - dover_obj.meta_data = {'IdReference': REF_NAME} - - dover_obj.nodes = [nodeid for nodeid in data_tup[2]] - - dover_obj.node_attributes.birth_rate = brth_rate - dover_obj.node_attributes.growth_rate = grow_rate - - dover_obj.individual_attributes.age_distribution.distribution_values = [age_x] - dover_obj.individual_attributes.age_distribution.result_scale_factor = 1 - dover_obj.individual_attributes.age_distribution.result_values = [age_y] - - dover_obj.individual_attributes.mortality_distribution.axis_names = ['gender','age'] - dover_obj.individual_attributes.mortality_distribution.axis_scale_factors = [1,1] - dover_obj.individual_attributes.mortality_distribution.num_distribution_axes = 2 - dover_obj.individual_attributes.mortality_distribution.num_population_groups = [2,len(d_rate_x)] - dover_obj.individual_attributes.mortality_distribution.population_groups = [[0,1], d_rate_x] - dover_obj.individual_attributes.mortality_distribution.result_scale_factor = 1 - dover_obj.individual_attributes.mortality_distribution.result_values = [d_rate_y,d_rate_y] - - nfname = DEMOG_FILENAME.rsplit('.',1)[0] + '_vd{:03}.json'.format(k1) - nfname = os.path.join(PATH_OVERLAY,nfname) - gdata.demog_files.append(nfname) - dover_obj.to_file(file_name=nfname) - - # Calculate initial susceptibilities - targ_frac = 1.1*(1.0/R0) # Tries to aim for Reff of 1.1; - - # Stuff below ought to get wrapped into a separate function. It's doing an implicit solve - # of an exponential decay mapped onto the age distribution specified above. The target - # area-under-the-curve is the value specified by targ_frac above. Just aims to get close. - # May break for very low target frac values (e.g., < 0.01) - age_year = np.array(age_y[1:])/365.0 - age_prob = np.diff(np.array(age_x)) - - boxer = lambda x1: np.sum(np.minimum(np.exp(x1*(age_year-0.65)),1.0)*age_prob)-targ_frac - iSP0 = opt.brentq(boxer, a=-80, b=0) - isus_x = [0] + (np.logspace(1.475,4.540,20,dtype=int)).tolist() - isus_y = [round(np.minimum(np.exp(iSP0*(val/365.0-0.65)),1.0),4) for val in isus_x] - - # Initial susceptibility overlays - dover_obj = DemographicsOverlay() - dover_obj.individual_attributes = IndividualAttributes() - dover_obj.individual_attributes.susceptibility_distribution = IndividualAttributes.SusceptibilityDistribution() - - dover_obj.meta_data = {'IdReference': REF_NAME} - - dover_obj.nodes = [nodeid for nodeid in data_tup[2]] - - dover_obj.individual_attributes.susceptibility_distribution.distribution_values = isus_x - dover_obj.individual_attributes.susceptibility_distribution.result_scale_factor = 1 - dover_obj.individual_attributes.susceptibility_distribution.result_values = isus_y - - nfname = DEMOG_FILENAME.rsplit('.',1)[0] + '_is{:03}.json'.format(k1) - nfname = os.path.join(PATH_OVERLAY,nfname) - gdata.demog_files.append(nfname) - dover_obj.to_file(file_name=nfname) - - - # ***** Write primary demographics file ***** - - demog_obj.generate_file(name=DEMOG_FILENAME) - - # Save the demographics object for use in other functions - gdata.demog_object = demog_obj - - - - return None - -#******************************************************************************* \ No newline at end of file diff --git a/model_measles_nga01/Assets/python/builder_reports.py b/model_measles_nga01/Assets/python/builder_reports.py deleted file mode 100644 index 6b0a90b3..00000000 --- a/model_measles_nga01/Assets/python/builder_reports.py +++ /dev/null @@ -1,25 +0,0 @@ -# ***************************************************************************** -# -# Configuration file for custom reporters. -# -# ***************************************************************************** - -from emod_report_func import build_file, write_file - -# ***************************************************************************** - - -def reportsBuilder(): - - # Dictionary to be written - json_set = build_file() - - # Configurations - pass - - # Write file - write_file(json_set) - - return None - -# ***************************************************************************** diff --git a/model_measles_nga01/Assets/python/dtk_in_process.py b/model_measles_nga01/Assets/python/dtk_in_process.py deleted file mode 100644 index e65f86d7..00000000 --- a/model_measles_nga01/Assets/python/dtk_in_process.py +++ /dev/null @@ -1,68 +0,0 @@ -#******************************************************************************** -# -#******************************************************************************** - -import os, sys, json, sqlite3 - -import global_data as gdata - -import numpy as np - -import emod_api.campaign as camp_module - -from builder_campaign import IV_SIA - -#******************************************************************************* - -def application(timestep): - - PREV_TIME = gdata.prev_proc_time - FIRST_CALL = gdata.first_call_bool - NODE_DICT = gdata.demog_node - - - proc_time = float(timestep) - - - # First call to in-process; initialize as needed - if(FIRST_CALL): - gdata.first_call_bool = False - gdata.data_vec_time = np.array(list()) - gdata.data_vec_node = np.array(list()) - gdata.data_vec_mcw = np.array(list()) - - print("Hello from in-process at time {:.1f}".format(proc_time)) - - - # Only evaluate every month-ish - #if(((proc_time%365.0)%30.0) < 29.0): - if(True): - return None - - - # Connect to SQL database; retreive new entries - connection_obj = sqlite3.connect('simulation_events.db') - cursor_obj = connection_obj.cursor() - - sql_cmd = "SELECT * FROM SIM_EVENTS WHERE SIM_TIME > {:.1f}".format(PREV_TIME) - cursor_obj.execute(sql_cmd) - row_list = cursor_obj.fetchall() - - data_time = np.array([val[0] for val in row_list], dtype = float) # Time - data_node = np.array([val[2] for val in row_list], dtype = int ) # Node - data_mcw = np.array([val[4] for val in row_list], dtype = float) # MCW - data_age = np.array([val[5] for val in row_list], dtype = float) # Age - - gdata.data_vec_time = np.append(gdata.data_vec_time, data_time) - gdata.data_vec_node = np.append(gdata.data_vec_node, data_node) - gdata.data_vec_mcw = np.append(gdata.data_vec_mcw, data_mcw) - gdata.data_vec_age = np.append(gdata.data_vec_mcw, data_age) - - - # Record timestamp of previous process - gdata.prev_proc_time = proc_time - - - return None - -#******************************************************************************* diff --git a/model_measles_nga01/Assets/python/dtk_post_process.py b/model_measles_nga01/Assets/python/dtk_post_process.py deleted file mode 100644 index 5d7fc3b1..00000000 --- a/model_measles_nga01/Assets/python/dtk_post_process.py +++ /dev/null @@ -1,137 +0,0 @@ -#******************************************************************************** -# -#******************************************************************************** - -import os, sys, shutil, json, sqlite3 - -import global_data as gdata - -import numpy as np - -from aux_obj_calc import norpois_opt - -#******************************************************************************** - -pop_age_days = [ 0, 1825, 3650, 5475, 7300, 9125, 10950, 12775, - 14600, 16425, 18250, 20075, 21900, 23725, 25550, 27375, - 29200, 31025, 32850, 34675, 36500] - -nga_2010_frac = [] - -nga_2020_frac = [] - -tpop_xval = [] - -tpop_yval = [] - -ref_dat = [] - -#******************************************************************************** - -def application(output_path): - - BASE_YEAR = gdata.base_year - TIME_STEP = gdata.t_step_days - START_LOG_TIME = gdata.start_log_time - - SIM_IDX = gdata.sim_index - PREV_TIME = gdata.prev_proc_time - REP_MAP_DICT = gdata.demog_node_map # LGA Dotname: [NodeIDs] - NODEID_DICT = gdata.demog_node # Node Dotname: ForcedID - - - # ***** Get variables for this simulation ***** - START_YEAR = gdata.var_params['start_year'] - RUN_YEARS = gdata.var_params['run_years'] - - - # Connect to SQL database; retreive new entries - connection_obj = sqlite3.connect('simulation_events.db') - cursor_obj = connection_obj.cursor() - - sql_cmd = "SELECT * FROM SIM_EVENTS WHERE SIM_TIME > {:.1f}".format(PREV_TIME) - cursor_obj.execute(sql_cmd) - row_list = cursor_obj.fetchall() - - data_time = np.array([val[0] for val in row_list], dtype = float) # Time - data_node = np.array([val[2] for val in row_list], dtype = int ) # Node - data_mcw = np.array([val[4] for val in row_list], dtype = float) # MCW - data_age = np.array([val[5] for val in row_list], dtype = float) # Age - - gdata.data_vec_time = np.append(gdata.data_vec_time, data_time) - gdata.data_vec_node = np.append(gdata.data_vec_node, data_node) - gdata.data_vec_mcw = np.append(gdata.data_vec_mcw, data_mcw) - gdata.data_vec_age = np.append(gdata.data_vec_mcw, data_age) - - - # Prep output dictionary - key_str = '{:05d}'.format(SIM_IDX) - parsed_dat = {key_str: dict()} - - - # Aggregate new infections to timeseries by month, by admin01 - DAY_BINS = [31,28,31,30,31,30,31,31,30,31,30,31] - BIN_EDGES = np.cumsum(15*DAY_BINS) + START_LOG_TIME + 0.5 # Hist for 15 years - BIN_EDGES = np.insert(BIN_EDGES, 0, START_LOG_TIME + 0.5) - - adm1_list = list(set([val.rsplit(':',1)[0] for val in REP_MAP_DICT.keys()])) - adm1_dict = {adm1:[NODEID_DICT[val] for val in NODEID_DICT.keys() if val.startswith(adm1+':')] - for adm1 in adm1_list} - - for adm1_name in adm1_dict: - rep_bool = np.isin(gdata.data_vec_node,adm1_dict[adm1_name]) - (inf_mo, tstamps) = np.histogram(gdata.data_vec_time[rep_bool], - bins = BIN_EDGES, - weights = gdata.data_vec_mcw[rep_bool]) - - parsed_dat[key_str][adm1_name] = inf_mo.tolist() - - - # Sample population pyramid at start, then every year - with open(os.path.join(output_path,'DemographicsSummary.json')) as fid01: - demog_output = json.load(fid01) - - ds_start = demog_output['Header']['Start_Time'] - ds_nstep = demog_output['Header']['Timesteps'] - ds_tsize = demog_output['Header']['Simulation_Timestep'] - time_vec = np.arange(ds_nstep)*ds_tsize + ds_start - nyr_bool = (np.diff(time_vec//365.0)>0.0) - - age_key_list = [ '<5', '5-9', '10-14', '15-19', '20-24', '25-29', - '30-34', '35-39', '40-44', '45-49', '50-54', '55-59', - '60-64', '65-69', '70-74', '75-79', '80-84', '85-89', - '90-94', '95-99'] - pyr_dat = np.zeros((int(RUN_YEARS)+1,len(age_key_list))) - - for k1 in range(len(age_key_list)): - age_key_str = 'Population Age {:s}'.format(age_key_list[k1]) - age_vec_dat = np.array(demog_output['Channels'][age_key_str]['Data']) - pyr_dat[0, k1] = age_vec_dat[0] - age_subset = age_vec_dat[:-1][nyr_bool] - if(age_subset.shape[0] < int(RUN_YEARS)): - age_subset = np.append(age_subset, age_vec_dat[-1]) - pyr_dat[1:, k1] = age_subset - - parsed_dat[key_str]['pyramid'] = pyr_dat.tolist() - - - # Calibration score from timeseries data - #(err_score, scal_vec) = norpois_opt([ref_dat], inf_mo[:len(ref_dat)]) - err_score = 0 - - parsed_dat[key_str]['cal_val'] = float(err_score) - #parsed_dat[key_str]['rep_rate'] = float(scal_vec[0]) - - - # Common output data - parsed_dat['tstamps'] = (np.diff(tstamps)/2.0 + tstamps[:-1]).tolist() - - - # Write output dictionary - with open('parsed_out.json','w') as fid01: - json.dump(parsed_dat, fid01) - - - return None - -#******************************************************************************* diff --git a/model_measles_nga01/Assets/python/dtk_pre_process.py b/model_measles_nga01/Assets/python/dtk_pre_process.py deleted file mode 100644 index 163a1a50..00000000 --- a/model_measles_nga01/Assets/python/dtk_pre_process.py +++ /dev/null @@ -1,18 +0,0 @@ -# ***************************************************************************** -# -# ***************************************************************************** - -from emod_preproc_func import standard_pre_process - -# ***************************************************************************** - - -def application(config_filename_in): - - # Standard pre-process function calls all other file builders - config_filename = standard_pre_process() - - # Pre-process function needs to return config filename as a string - return config_filename - -# ***************************************************************************** diff --git a/model_measles_nga01/Assets/python/global_data.py b/model_measles_nga01/Assets/python/global_data.py deleted file mode 100644 index 09dcaf7e..00000000 --- a/model_measles_nga01/Assets/python/global_data.py +++ /dev/null @@ -1,41 +0,0 @@ -#******************************************************************************** -# -# Static data module for embedded python in the DTK. -# -#******************************************************************************** - -# Control params -sim_index = None -var_params = dict() -schema_path = 'Assets/schema.json' - -# Filename params -demog_files = list() -camp_file = None -reports_file = 'custom_dlls.json' - -demog_dict = dict() -demog_node = dict() -demog_node_map = dict() # LGA: [NodeIDs] - -demog_object = None -demog_min_pop = 100 - -# Other stuff -first_call_bool = True -prev_proc_time = -1.0 -max_node_id = 0 - -data_vec_time = None -data_vec_node = None -data_vec_mcw = None -data_vec_age = None - -base_year = 1900.0 -t_step_days = 1.0 -start_log_time = None - -max_clock = 120.0 - -#******************************************************************************* - diff --git a/model_measles_nga01/Assets/python/refdat_alias.py b/model_measles_nga01/Assets/python/refdat_alias.py deleted file mode 100644 index 5801a510..00000000 --- a/model_measles_nga01/Assets/python/refdat_alias.py +++ /dev/null @@ -1,67 +0,0 @@ -#******************************************************************************** -# -# Alias data -# -#******************************************************************************** - -data_dict = \ -{ - "AFRO:NIGERIA:NORTH_CENTRAL": [ - "AFRO:NIGERIA:BENUE", - "AFRO:NIGERIA:FCT_ABUJA", - "AFRO:NIGERIA:KOGI", - "AFRO:NIGERIA:KWARA", - "AFRO:NIGERIA:NASARAWA", - "AFRO:NIGERIA:NIGER", - "AFRO:NIGERIA:PLATEAU" - ], - "AFRO:NIGERIA:NORTH_EAST": [ - "AFRO:NIGERIA:ADAMAWA", - "AFRO:NIGERIA:BAUCHI", - "AFRO:NIGERIA:BORNO", - "AFRO:NIGERIA:GOMBE", - "AFRO:NIGERIA:TARABA", - "AFRO:NIGERIA:YOBE" - ], - "AFRO:NIGERIA:NORTH_WEST": [ - "AFRO:NIGERIA:JIGAWA", - "AFRO:NIGERIA:KADUNA", - "AFRO:NIGERIA:KANO", - "AFRO:NIGERIA:KATSINA", - "AFRO:NIGERIA:KEBBI", - "AFRO:NIGERIA:SOKOTO", - "AFRO:NIGERIA:ZAMFARA" - ], - "AFRO:NIGERIA:SOUTH_EAST": [ - "AFRO:NIGERIA:ABIA", - "AFRO:NIGERIA:ANAMBRA", - "AFRO:NIGERIA:EBONYI", - "AFRO:NIGERIA:ENUGU", - "AFRO:NIGERIA:IMO" - ], - "AFRO:NIGERIA:SOUTH_SOUTH": [ - "AFRO:NIGERIA:AKWA_IBOM", - "AFRO:NIGERIA:BAYELSA", - "AFRO:NIGERIA:CROSS_RIVER", - "AFRO:NIGERIA:DELTA", - "AFRO:NIGERIA:EDO", - "AFRO:NIGERIA:RIVERS" - ], - "AFRO:NIGERIA:SOUTH_WEST": [ - "AFRO:NIGERIA:EKITI", - "AFRO:NIGERIA:LAGOS", - "AFRO:NIGERIA:OGUN", - "AFRO:NIGERIA:ONDO", - "AFRO:NIGERIA:OSUN", - "AFRO:NIGERIA:OYO" - ] -} - -#******************************************************************************** - - - - - - - diff --git a/model_measles_nga01/Assets/python/refdat_area_100km.py b/model_measles_nga01/Assets/python/refdat_area_100km.py deleted file mode 100644 index a1d780a5..00000000 --- a/model_measles_nga01/Assets/python/refdat_area_100km.py +++ /dev/null @@ -1,9202 +0,0 @@ -#******************************************************************************** -# -# Area data; km^2 -# -#******************************************************************************** - -data_dict = \ -{ - "AFRO:NIGERIA:ABIA:ABA_NORTH:A000" : 27.499, - "AFRO:NIGERIA:ABIA:ABA_SOUTH:A000" : 37.811, - "AFRO:NIGERIA:ABIA:AROCHUKWU:A000" : 139.887, - "AFRO:NIGERIA:ABIA:AROCHUKWU:A001" : 113.160, - "AFRO:NIGERIA:ABIA:AROCHUKWU:A002" : 85.384, - "AFRO:NIGERIA:ABIA:AROCHUKWU:A003" : 103.960, - "AFRO:NIGERIA:ABIA:BENDE:A000" : 109.482, - "AFRO:NIGERIA:ABIA:BENDE:A001" : 113.117, - "AFRO:NIGERIA:ABIA:BENDE:A002" : 95.504, - "AFRO:NIGERIA:ABIA:BENDE:A003" : 81.574, - "AFRO:NIGERIA:ABIA:BENDE:A004" : 103.658, - "AFRO:NIGERIA:ABIA:BENDE:A005" : 90.076, - "AFRO:NIGERIA:ABIA:IKWUANO:A000" : 113.884, - "AFRO:NIGERIA:ABIA:IKWUANO:A001" : 81.241, - "AFRO:NIGERIA:ABIA:IKWUANO:A002" : 65.617, - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_NORTH:A000" : 107.903, - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_NORTH:A001" : 80.030, - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_NORTH:A002" : 88.166, - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_SOUTH:A000" : 73.619, - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_SOUTH:A001" : 88.865, - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_SOUTH:A002" : 88.910, - "AFRO:NIGERIA:ABIA:ISUIKWUATO:A000" : 99.309, - "AFRO:NIGERIA:ABIA:ISUIKWUATO:A001" : 107.079, - "AFRO:NIGERIA:ABIA:ISUIKWUATO:A002" : 76.815, - "AFRO:NIGERIA:ABIA:ISUIKWUATO:A003" : 93.200, - "AFRO:NIGERIA:ABIA:OBI_NGWA:A000" : 87.509, - "AFRO:NIGERIA:ABIA:OBI_NGWA:A001" : 96.849, - "AFRO:NIGERIA:ABIA:OBI_NGWA:A002" : 96.160, - "AFRO:NIGERIA:ABIA:OBI_NGWA:A003" : 90.552, - "AFRO:NIGERIA:ABIA:OHAFIA:A000" : 91.620, - "AFRO:NIGERIA:ABIA:OHAFIA:A001" : 109.886, - "AFRO:NIGERIA:ABIA:OHAFIA:A002" : 114.768, - "AFRO:NIGERIA:ABIA:OHAFIA:A003" : 129.464, - "AFRO:NIGERIA:ABIA:OHAFIA:A004" : 100.282, - "AFRO:NIGERIA:ABIA:OSISIOMA_NGWA:A000" : 104.162, - "AFRO:NIGERIA:ABIA:OSISIOMA_NGWA:A001" : 78.241, - "AFRO:NIGERIA:ABIA:UGWUNAGBO:A000" : 126.648, - "AFRO:NIGERIA:ABIA:UKWA_EAST:A000" : 79.799, - "AFRO:NIGERIA:ABIA:UKWA_EAST:A001" : 122.180, - "AFRO:NIGERIA:ABIA:UKWA_EAST:A002" : 121.703, - "AFRO:NIGERIA:ABIA:UKWA_WEST:A000" : 64.222, - "AFRO:NIGERIA:ABIA:UKWA_WEST:A001" : 181.750, - "AFRO:NIGERIA:ABIA:UMUAHIA_NORTH:A000" : 59.519, - "AFRO:NIGERIA:ABIA:UMUAHIA_NORTH:A001" : 89.923, - "AFRO:NIGERIA:ABIA:UMUAHIA_NORTH:A002" : 108.518, - "AFRO:NIGERIA:ABIA:UMUAHIA_SOUTH:A000" : 142.190, - "AFRO:NIGERIA:ABIA:UMU_NNEOCHI:A000" : 89.299, - "AFRO:NIGERIA:ABIA:UMU_NNEOCHI:A001" : 98.797, - "AFRO:NIGERIA:ABIA:UMU_NNEOCHI:A002" : 82.241, - "AFRO:NIGERIA:ABIA:UMU_NNEOCHI:A003" : 85.271, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A000" : 92.440, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A001" : 101.461, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A002" : 103.466, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A003" : 96.511, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A004" : 97.914, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A005" : 109.603, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A006" : 122.250, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A007" : 72.526, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A008" : 92.355, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A009" : 90.011, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A010" : 89.959, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A011" : 106.804, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A012" : 91.244, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A013" : 107.094, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A014" : 114.988, - "AFRO:NIGERIA:ADAMAWA:DEMSA:A015" : 105.087, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A000" : 104.988, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A001" : 95.202, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A002" : 85.024, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A003" : 99.625, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A004" : 103.679, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A005" : 90.316, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A006" : 111.488, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A007" : 103.706, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A008" : 99.096, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A009" : 99.644, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A010" : 109.299, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A011" : 114.791, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A012" : 97.861, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A013" : 98.227, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A014" : 102.108, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A015" : 84.844, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A016" : 94.742, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A017" : 111.413, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A018" : 93.912, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A019" : 103.955, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A020" : 100.827, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A021" : 98.389, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A022" : 99.346, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A023" : 90.816, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A024" : 98.958, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A025" : 93.882, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A026" : 101.572, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A027" : 103.913, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A028" : 88.877, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A029" : 98.635, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A030" : 106.024, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A031" : 102.949, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A032" : 92.114, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A033" : 101.604, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A034" : 124.385, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A035" : 107.512, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A036" : 95.270, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A037" : 105.586, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A038" : 92.456, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A039" : 104.623, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A040" : 102.446, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A041" : 89.119, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A042" : 98.203, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A043" : 99.995, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A044" : 82.303, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A045" : 113.178, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A046" : 100.318, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A047" : 79.615, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A048" : 109.286, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A049" : 102.460, - "AFRO:NIGERIA:ADAMAWA:FUFORE:A050" : 98.303, - "AFRO:NIGERIA:ADAMAWA:GANYE:A000" : 90.582, - "AFRO:NIGERIA:ADAMAWA:GANYE:A001" : 93.134, - "AFRO:NIGERIA:ADAMAWA:GANYE:A002" : 99.591, - "AFRO:NIGERIA:ADAMAWA:GANYE:A003" : 101.556, - "AFRO:NIGERIA:ADAMAWA:GANYE:A004" : 101.312, - "AFRO:NIGERIA:ADAMAWA:GANYE:A005" : 90.047, - "AFRO:NIGERIA:ADAMAWA:GANYE:A006" : 98.403, - "AFRO:NIGERIA:ADAMAWA:GANYE:A007" : 106.168, - "AFRO:NIGERIA:ADAMAWA:GANYE:A008" : 91.257, - "AFRO:NIGERIA:ADAMAWA:GANYE:A009" : 100.196, - "AFRO:NIGERIA:ADAMAWA:GANYE:A010" : 100.074, - "AFRO:NIGERIA:ADAMAWA:GANYE:A011" : 106.620, - "AFRO:NIGERIA:ADAMAWA:GANYE:A012" : 101.036, - 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"AFRO:NIGERIA:ZAMFARA:BUNGUDU:A020" : 106.244, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A000" : 100.064, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A001" : 98.982, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A002" : 107.047, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A003" : 109.353, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A004" : 83.280, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A005" : 109.842, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A006" : 114.705, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A007" : 102.757, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A008" : 99.634, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A009" : 101.545, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A010" : 103.046, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A011" : 98.768, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A012" : 100.841, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A013" : 85.046, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A014" : 100.555, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A015" : 93.311, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A016" : 107.605, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A017" : 99.399, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A018" : 100.871, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A019" : 100.978, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A020" : 98.166, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A021" : 94.185, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A022" : 95.172, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A023" : 89.792, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A024" : 98.743, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A025" : 95.215, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A026" : 83.220, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A027" : 91.006, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A028" : 98.078, - "AFRO:NIGERIA:ZAMFARA:GUMMI:A029" : 93.443, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A000" : 114.097, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A001" : 90.015, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A002" : 92.052, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A003" : 102.632, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A004" : 97.137, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A005" : 97.089, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A006" : 100.585, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A007" : 114.415, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A008" : 118.999, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A009" : 103.285, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A010" : 88.485, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A011" : 97.953, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A012" : 83.303, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A013" : 89.603, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A014" : 105.976, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A015" : 94.683, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A016" : 93.535, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A017" : 121.310, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A018" : 123.167, - "AFRO:NIGERIA:ZAMFARA:GUSAU:A019" : 109.205, - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA:A000" : 85.214, - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA:A001" : 110.262, - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA:A002" : 93.746, - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA:A003" : 94.109, - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA:A004" : 100.348, - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA:A005" : 90.036, - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA:A006" : 125.878, - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA:A007" : 117.733, - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA:A008" : 97.906, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A000" : 87.902, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A001" : 101.847, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A002" : 92.358, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A003" : 77.961, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A004" : 115.233, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A005" : 83.156, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A006" : 106.999, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A007" : 104.047, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A008" : 105.813, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A009" : 105.606, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A010" : 114.778, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A011" : 77.821, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A012" : 59.438, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A013" : 100.705, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A014" : 87.672, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A015" : 103.197, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A016" : 98.877, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A017" : 96.231, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A018" : 103.781, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A019" : 102.290, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A020" : 107.858, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A021" : 110.973, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A022" : 104.157, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A023" : 98.117, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A024" : 103.179, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A025" : 101.295, - "AFRO:NIGERIA:ZAMFARA:MARADUN:A026" : 109.404, - "AFRO:NIGERIA:ZAMFARA:MARU:A000" : 65.756, - "AFRO:NIGERIA:ZAMFARA:MARU:A001" : 112.576, - "AFRO:NIGERIA:ZAMFARA:MARU:A002" : 83.950, - "AFRO:NIGERIA:ZAMFARA:MARU:A003" : 77.478, - "AFRO:NIGERIA:ZAMFARA:MARU:A004" : 101.325, - "AFRO:NIGERIA:ZAMFARA:MARU:A005" : 75.164, - "AFRO:NIGERIA:ZAMFARA:MARU:A006" : 80.039, - "AFRO:NIGERIA:ZAMFARA:MARU:A007" : 89.298, - "AFRO:NIGERIA:ZAMFARA:MARU:A008" : 101.641, - "AFRO:NIGERIA:ZAMFARA:MARU:A009" : 97.625, - "AFRO:NIGERIA:ZAMFARA:MARU:A010" : 98.653, - "AFRO:NIGERIA:ZAMFARA:MARU:A011" : 100.635, - "AFRO:NIGERIA:ZAMFARA:MARU:A012" : 111.853, - "AFRO:NIGERIA:ZAMFARA:MARU:A013" : 91.292, - "AFRO:NIGERIA:ZAMFARA:MARU:A014" : 97.425, - "AFRO:NIGERIA:ZAMFARA:MARU:A015" : 99.637, - "AFRO:NIGERIA:ZAMFARA:MARU:A016" : 101.131, - "AFRO:NIGERIA:ZAMFARA:MARU:A017" : 104.435, - "AFRO:NIGERIA:ZAMFARA:MARU:A018" : 93.547, - "AFRO:NIGERIA:ZAMFARA:MARU:A019" : 85.582, - "AFRO:NIGERIA:ZAMFARA:MARU:A020" : 107.971, - "AFRO:NIGERIA:ZAMFARA:MARU:A021" : 85.210, - "AFRO:NIGERIA:ZAMFARA:MARU:A022" : 63.681, - "AFRO:NIGERIA:ZAMFARA:MARU:A023" : 102.219, - "AFRO:NIGERIA:ZAMFARA:MARU:A024" : 105.062, - "AFRO:NIGERIA:ZAMFARA:MARU:A025" : 89.474, - "AFRO:NIGERIA:ZAMFARA:MARU:A026" : 97.277, - "AFRO:NIGERIA:ZAMFARA:MARU:A027" : 111.059, - "AFRO:NIGERIA:ZAMFARA:MARU:A028" : 112.396, - "AFRO:NIGERIA:ZAMFARA:MARU:A029" : 97.772, - "AFRO:NIGERIA:ZAMFARA:MARU:A030" : 109.395, - "AFRO:NIGERIA:ZAMFARA:MARU:A031" : 110.349, - "AFRO:NIGERIA:ZAMFARA:MARU:A032" : 123.440, - "AFRO:NIGERIA:ZAMFARA:MARU:A033" : 99.044, - "AFRO:NIGERIA:ZAMFARA:MARU:A034" : 96.680, - "AFRO:NIGERIA:ZAMFARA:MARU:A035" : 96.280, - "AFRO:NIGERIA:ZAMFARA:MARU:A036" : 102.638, - "AFRO:NIGERIA:ZAMFARA:MARU:A037" : 109.063, - "AFRO:NIGERIA:ZAMFARA:MARU:A038" : 103.780, - "AFRO:NIGERIA:ZAMFARA:MARU:A039" : 110.632, - "AFRO:NIGERIA:ZAMFARA:MARU:A040" : 108.751, - "AFRO:NIGERIA:ZAMFARA:MARU:A041" : 100.462, - "AFRO:NIGERIA:ZAMFARA:MARU:A042" : 108.948, - "AFRO:NIGERIA:ZAMFARA:MARU:A043" : 109.585, - "AFRO:NIGERIA:ZAMFARA:MARU:A044" : 89.993, - "AFRO:NIGERIA:ZAMFARA:MARU:A045" : 106.808, - "AFRO:NIGERIA:ZAMFARA:MARU:A046" : 101.236, - "AFRO:NIGERIA:ZAMFARA:MARU:A047" : 102.901, - "AFRO:NIGERIA:ZAMFARA:MARU:A048" : 103.886, - "AFRO:NIGERIA:ZAMFARA:MARU:A049" : 103.278, - "AFRO:NIGERIA:ZAMFARA:MARU:A050" : 103.981, - "AFRO:NIGERIA:ZAMFARA:MARU:A051" : 106.370, - "AFRO:NIGERIA:ZAMFARA:MARU:A052" : 100.888, - "AFRO:NIGERIA:ZAMFARA:MARU:A053" : 100.425, - "AFRO:NIGERIA:ZAMFARA:MARU:A054" : 118.034, - "AFRO:NIGERIA:ZAMFARA:MARU:A055" : 103.228, - "AFRO:NIGERIA:ZAMFARA:MARU:A056" : 102.316, - "AFRO:NIGERIA:ZAMFARA:MARU:A057" : 97.959, - "AFRO:NIGERIA:ZAMFARA:MARU:A058" : 91.802, - "AFRO:NIGERIA:ZAMFARA:MARU:A059" : 107.548, - "AFRO:NIGERIA:ZAMFARA:MARU:A060" : 97.602, - "AFRO:NIGERIA:ZAMFARA:MARU:A061" : 96.874, - "AFRO:NIGERIA:ZAMFARA:MARU:A062" : 92.464, - "AFRO:NIGERIA:ZAMFARA:MARU:A063" : 94.915, - "AFRO:NIGERIA:ZAMFARA:MARU:A064" : 109.494, - "AFRO:NIGERIA:ZAMFARA:MARU:A065" : 102.745, - "AFRO:NIGERIA:ZAMFARA:MARU:A066" : 103.343, - "AFRO:NIGERIA:ZAMFARA:MARU:A067" : 111.352, - "AFRO:NIGERIA:ZAMFARA:MARU:A068" : 82.387, - "AFRO:NIGERIA:ZAMFARA:MARU:A069" : 82.751, - "AFRO:NIGERIA:ZAMFARA:MARU:A070" : 105.961, - "AFRO:NIGERIA:ZAMFARA:MARU:A071" : 98.286, - "AFRO:NIGERIA:ZAMFARA:MARU:A072" : 111.935, - "AFRO:NIGERIA:ZAMFARA:MARU:A073" : 91.908, - "AFRO:NIGERIA:ZAMFARA:MARU:A074" : 97.180, - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A000" : 114.381, - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A001" : 106.511, - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A002" : 96.148, - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A003" : 113.352, - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A004" : 114.338, - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A005" : 90.917, - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A006" : 87.649, - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A007" : 103.407, - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A008" : 98.465, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A000" : 103.539, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A001" : 117.131, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A002" : 89.490, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A003" : 104.454, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A004" : 105.049, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A005" : 101.977, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A006" : 107.119, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A007" : 104.921, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A008" : 107.632, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A009" : 108.256, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A010" : 96.751, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A011" : 92.852, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A012" : 94.529, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A013" : 99.663, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A014" : 109.626, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A000" : 100.630, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A001" : 110.103, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A002" : 94.433, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A003" : 130.137, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A004" : 87.365, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A005" : 100.122, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A006" : 98.479, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A007" : 98.239, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A008" : 96.682, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A009" : 104.292, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A010" : 101.767, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A011" : 99.052, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A012" : 104.809, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A013" : 106.167, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A014" : 101.326, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A015" : 87.909, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A016" : 109.213, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A017" : 110.973, - "AFRO:NIGERIA:ZAMFARA:TSAFE:A018" : 97.957, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A000" : 105.441, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A001" : 60.970, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A002" : 92.021, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A003" : 105.625, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A004" : 102.383, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A005" : 107.413, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A006" : 99.127, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A007" : 93.583, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A008" : 108.885, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A009" : 108.598, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A010" : 110.998, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A011" : 96.554, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A012" : 92.540, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A013" : 104.991, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A014" : 122.783, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A015" : 101.921, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A016" : 102.954, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A017" : 94.616, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A018" : 94.901, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A019" : 110.352, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A020" : 100.308, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A021" : 94.966, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A022" : 105.880, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A023" : 98.740, - "AFRO:NIGERIA:ZAMFARA:ZURMI:A024" : 105.398 -} - -#******************************************************************************** \ No newline at end of file diff --git a/model_measles_nga01/Assets/python/refdat_area_admin02.py b/model_measles_nga01/Assets/python/refdat_area_admin02.py deleted file mode 100644 index 697f3602..00000000 --- a/model_measles_nga01/Assets/python/refdat_area_admin02.py +++ /dev/null @@ -1,792 +0,0 @@ -#******************************************************************************** -# -# Area data; km^2 -# -#******************************************************************************** - -data_dict = \ -{ - "AFRO:NIGERIA:ABIA:ABA_NORTH": 22.0, - "AFRO:NIGERIA:ABIA:ABA_SOUTH": 41.6, - "AFRO:NIGERIA:ABIA:AROCHUKWU": 448.6, - "AFRO:NIGERIA:ABIA:BENDE": 692.7, - "AFRO:NIGERIA:ABIA:IKWUANO": 276.4, - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_NORTH": 243.6, - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_SOUTH": 284.2, - "AFRO:NIGERIA:ABIA:ISUIKWUATO": 353.8, - "AFRO:NIGERIA:ABIA:OBI_NGWA": 369.9, - "AFRO:NIGERIA:ABIA:OHAFIA": 449.4, - "AFRO:NIGERIA:ABIA:OSISIOMA_NGWA": 182.0, - "AFRO:NIGERIA:ABIA:UGWUNAGBO": 122.3, - "AFRO:NIGERIA:ABIA:UKWA_EAST": 320.7, - "AFRO:NIGERIA:ABIA:UKWA_WEST": 259.9, - "AFRO:NIGERIA:ABIA:UMUAHIA_NORTH": 258.0, - "AFRO:NIGERIA:ABIA:UMUAHIA_SOUTH": 142.2, - "AFRO:NIGERIA:ABIA:UMU_NNEOCHI": 355.6, - "AFRO:NIGERIA:ADAMAWA:DEMSA": 1599.4, - "AFRO:NIGERIA:ADAMAWA:FUFORE": 5086.9, - "AFRO:NIGERIA:ADAMAWA:GANYE": 2104.0, - "AFRO:NIGERIA:ADAMAWA:GIREI": 1044.6, - "AFRO:NIGERIA:ADAMAWA:GOMBI": 2321.2, - "AFRO:NIGERIA:ADAMAWA:GUYUK": 767.7, - "AFRO:NIGERIA:ADAMAWA:HONG": 2598.2, - "AFRO:NIGERIA:ADAMAWA:JADA": 3598.2, - "AFRO:NIGERIA:ADAMAWA:LAMURDE": 1087.4, - "AFRO:NIGERIA:ADAMAWA:MADAGALI": 961.3, - "AFRO:NIGERIA:ADAMAWA:MAIHA": 1351.8, - "AFRO:NIGERIA:ADAMAWA:MAYO_BELWA": 2377.9, - "AFRO:NIGERIA:ADAMAWA:MICHIKA": 825.6, - "AFRO:NIGERIA:ADAMAWA:MUBI_NORTH": 829.4, - "AFRO:NIGERIA:ADAMAWA:MUBI_SOUTH": 477.8, - "AFRO:NIGERIA:ADAMAWA:NUMAN": 807.2, - "AFRO:NIGERIA:ADAMAWA:SHELLENG": 1386.5, - "AFRO:NIGERIA:ADAMAWA:SONG": 4219.3, - "AFRO:NIGERIA:ADAMAWA:TOUNGO": 5670.4, - "AFRO:NIGERIA:ADAMAWA:YOLA_NORTH": 67.6, - "AFRO:NIGERIA:ADAMAWA:YOLA_SOUTH": 922.8, - "AFRO:NIGERIA:AKWA_IBOM:ABAK": 186.4, - "AFRO:NIGERIA:AKWA_IBOM:EASTERN_OBOLO": 157.2, - "AFRO:NIGERIA:AKWA_IBOM:EKET": 190.6, - "AFRO:NIGERIA:AKWA_IBOM:ESIT_EKET": 144.2, - "AFRO:NIGERIA:AKWA_IBOM:ESSIEN_UDIM": 309.2, - "AFRO:NIGERIA:AKWA_IBOM:ETIM_EKPO": 188.5, - "AFRO:NIGERIA:AKWA_IBOM:ETINAN": 194.5, - "AFRO:NIGERIA:AKWA_IBOM:IBENO": 272.4, - "AFRO:NIGERIA:AKWA_IBOM:IBESIKPO_ASUTAN": 178.2, - "AFRO:NIGERIA:AKWA_IBOM:IBIONO_IBOM": 391.1, - "AFRO:NIGERIA:AKWA_IBOM:IKA": 136.9, - "AFRO:NIGERIA:AKWA_IBOM:IKONO": 173.6, - "AFRO:NIGERIA:AKWA_IBOM:IKOT_ABASI": 282.0, - "AFRO:NIGERIA:AKWA_IBOM:IKOT_EKPENE": 161.6, - "AFRO:NIGERIA:AKWA_IBOM:INI": 337.4, - "AFRO:NIGERIA:AKWA_IBOM:ITU": 182.1, - "AFRO:NIGERIA:AKWA_IBOM:MBO": 331.4, - "AFRO:NIGERIA:AKWA_IBOM:MKPAT_ENIN": 379.0, - "AFRO:NIGERIA:AKWA_IBOM:NSIT_ATAI": 146.6, - "AFRO:NIGERIA:AKWA_IBOM:NSIT_IBOM": 138.0, - "AFRO:NIGERIA:AKWA_IBOM:NSIT_UBIUM": 195.2, - "AFRO:NIGERIA:AKWA_IBOM:OBOT_AKARA": 269.3, - "AFRO:NIGERIA:AKWA_IBOM:OKOBO": 307.7, - "AFRO:NIGERIA:AKWA_IBOM:ONNA": 55.1, - "AFRO:NIGERIA:AKWA_IBOM:ORON": 127.0, - "AFRO:NIGERIA:AKWA_IBOM:ORUK_ANAM": 540.2, - "AFRO:NIGERIA:AKWA_IBOM:UDUNG_UKO": 66.5, - "AFRO:NIGERIA:AKWA_IBOM:UKANAFUN": 239.9, - "AFRO:NIGERIA:AKWA_IBOM:URUAN": 322.1, - "AFRO:NIGERIA:AKWA_IBOM:URUE_OFFONG_ORUKO": 101.3, - "AFRO:NIGERIA:AKWA_IBOM:UYO": 168.3, - "AFRO:NIGERIA:ANAMBRA:AGUATA": 195.5, - "AFRO:NIGERIA:ANAMBRA:ANAMBRA_EAST": 626.1, - "AFRO:NIGERIA:ANAMBRA:ANAMBRA_WEST": 579.8, - "AFRO:NIGERIA:ANAMBRA:ANAOCHA": 121.9, - "AFRO:NIGERIA:ANAMBRA:AWKA_NORTH": 357.5, - "AFRO:NIGERIA:ANAMBRA:AWKA_SOUTH": 150.3, - "AFRO:NIGERIA:ANAMBRA:AYAMELUM": 600.2, - "AFRO:NIGERIA:ANAMBRA:DUNUKOFIA": 67.9, - "AFRO:NIGERIA:ANAMBRA:EKWUSIGO": 134.8, - "AFRO:NIGERIA:ANAMBRA:IDEMILI_NORTH": 139.4, - "AFRO:NIGERIA:ANAMBRA:IDEMILI_SOUTH": 112.4, - "AFRO:NIGERIA:ANAMBRA:IHIALA": 307.9, - "AFRO:NIGERIA:ANAMBRA:NJIKOKA": 82.4, - "AFRO:NIGERIA:ANAMBRA:NNEWI_NORTH": 48.1, - "AFRO:NIGERIA:ANAMBRA:NNEWI_SOUTH": 178.0, - "AFRO:NIGERIA:ANAMBRA:OGBARU": 390.7, - "AFRO:NIGERIA:ANAMBRA:ONITSHA_NORTH": 28.8, - "AFRO:NIGERIA:ANAMBRA:ONITSHA_SOUTH": 10.0, - "AFRO:NIGERIA:ANAMBRA:ORUMBA_NORTH": 295.3, - "AFRO:NIGERIA:ANAMBRA:ORUMBA_SOUTH": 204.7, - "AFRO:NIGERIA:ANAMBRA:OYI": 148.5, - "AFRO:NIGERIA:BAUCHI:ALKALERI": 7144.3, - "AFRO:NIGERIA:BAUCHI:BAUCHI": 3232.0, - "AFRO:NIGERIA:BAUCHI:BOGORO": 837.9, - "AFRO:NIGERIA:BAUCHI:DAMBAN": 1181.9, - "AFRO:NIGERIA:BAUCHI:DARAZO": 3042.5, - "AFRO:NIGERIA:BAUCHI:DASS": 682.1, - "AFRO:NIGERIA:BAUCHI:GAMAWA": 2868.6, - 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"AFRO:NIGERIA:OSUN:BORIPE": 120.2, - "AFRO:NIGERIA:OSUN:EDE_NORTH": 79.7, - "AFRO:NIGERIA:OSUN:EDE_SOUTH": 243.2, - "AFRO:NIGERIA:OSUN:EGBEDORE": 282.4, - "AFRO:NIGERIA:OSUN:EJIGBO": 310.3, - "AFRO:NIGERIA:OSUN:IFEDAYO": 140.9, - "AFRO:NIGERIA:OSUN:IFELODUN": 144.2, - "AFRO:NIGERIA:OSUN:IFE_CENTRAL": 142.4, - "AFRO:NIGERIA:OSUN:IFE_EAST": 288.0, - "AFRO:NIGERIA:OSUN:IFE_NORTH": 419.0, - "AFRO:NIGERIA:OSUN:IFE_SOUTH": 1043.5, - "AFRO:NIGERIA:OSUN:ILA": 258.4, - "AFRO:NIGERIA:OSUN:ILESHA_EAST": 72.6, - "AFRO:NIGERIA:OSUN:ILESHA_WEST": 86.4, - "AFRO:NIGERIA:OSUN:IREPODUN": 9.0, - "AFRO:NIGERIA:OSUN:IREWOLE": 257.6, - "AFRO:NIGERIA:OSUN:ISOKAN": 257.2, - "AFRO:NIGERIA:OSUN:IWO": 260.7, - "AFRO:NIGERIA:OSUN:OBOKUN": 513.0, - "AFRO:NIGERIA:OSUN:ODO_OTIN": 239.7, - "AFRO:NIGERIA:OSUN:OLA_OLUWA": 369.8, - "AFRO:NIGERIA:OSUN:OLORUNDA": 193.7, - "AFRO:NIGERIA:OSUN:ORIADE": 434.1, - "AFRO:NIGERIA:OSUN:OROLU": 65.9, - "AFRO:NIGERIA:OSUN:OSOGBO": 128.5, - "AFRO:NIGERIA:OYO:AFIJIO": 925.7, - "AFRO:NIGERIA:OYO:AKINYELE": 446.2, - "AFRO:NIGERIA:OYO:ATIBA": 678.2, - "AFRO:NIGERIA:OYO:ATISBO": 3121.7, - "AFRO:NIGERIA:OYO:EGBEDA": 232.3, - "AFRO:NIGERIA:OYO:IBADAN_NORTH": 19.7, - "AFRO:NIGERIA:OYO:IBADAN_NORTH_EAST": 20.8, - "AFRO:NIGERIA:OYO:IBADAN_NORTH_WEST": 13.6, - "AFRO:NIGERIA:OYO:IBADAN_SOUTH_EAST": 14.9, - "AFRO:NIGERIA:OYO:IBADAN_SOUTH_WEST": 25.3, - "AFRO:NIGERIA:OYO:IBARAPA_CENTRAL": 411.9, - "AFRO:NIGERIA:OYO:IBARAPA_EAST": 766.9, - "AFRO:NIGERIA:OYO:IBARAPA_NORTH": 1224.0, - "AFRO:NIGERIA:OYO:IDO": 762.8, - "AFRO:NIGERIA:OYO:IREPO": 1014.7, - "AFRO:NIGERIA:OYO:ISEYIN": 2351.4, - "AFRO:NIGERIA:OYO:ITESIWAJU": 984.4, - "AFRO:NIGERIA:OYO:IWAJOWA": 2552.1, - "AFRO:NIGERIA:OYO:KAJOLA": 667.0, - "AFRO:NIGERIA:OYO:LAGELU": 406.8, - "AFRO:NIGERIA:OYO:OGBOMOSHO_NORTH": 179.5, - "AFRO:NIGERIA:OYO:OGBOMOSHO_SOUTH": 47.7, - "AFRO:NIGERIA:OYO:OGO_OLUWA": 420.5, - "AFRO:NIGERIA:OYO:OLORUNSOGO": 1637.9, - "AFRO:NIGERIA:OYO:OLUYOLE": 660.2, - "AFRO:NIGERIA:OYO:ONA_ARA": 315.1, - "AFRO:NIGERIA:OYO:ORELOPE": 934.0, - "AFRO:NIGERIA:OYO:ORI_IRE": 2071.7, - 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"AFRO:NIGERIA:SOKOTO:GUDU": 2999.6, - "AFRO:NIGERIA:SOKOTO:GWADABAWA": 1011.4, - "AFRO:NIGERIA:SOKOTO:ILLELA": 1028.6, - "AFRO:NIGERIA:SOKOTO:ISA": 2046.2, - "AFRO:NIGERIA:SOKOTO:KEBBE": 2209.5, - "AFRO:NIGERIA:SOKOTO:KWARE": 645.4, - "AFRO:NIGERIA:SOKOTO:RABAH": 2137.9, - "AFRO:NIGERIA:SOKOTO:SABON_BIRNI": 2305.9, - "AFRO:NIGERIA:SOKOTO:SHAGARI": 1375.8, - "AFRO:NIGERIA:SOKOTO:SILAME": 741.0, - "AFRO:NIGERIA:SOKOTO:SOKOTO_NORTH": 19.4, - "AFRO:NIGERIA:SOKOTO:SOKOTO_SOUTH": 32.2, - "AFRO:NIGERIA:SOKOTO:TAMBUWAL": 1851.2, - "AFRO:NIGERIA:SOKOTO:TANGAZA": 2327.5, - "AFRO:NIGERIA:SOKOTO:TURETA": 1875.4, - "AFRO:NIGERIA:SOKOTO:WAMAKKO": 696.9, - "AFRO:NIGERIA:SOKOTO:WURNO": 668.3, - "AFRO:NIGERIA:SOKOTO:YABO": 834.7, - "AFRO:NIGERIA:TARABA:ARDO_KOLA": 2001.6, - "AFRO:NIGERIA:TARABA:BALI": 9757.2, - "AFRO:NIGERIA:TARABA:DONGA": 3105.5, - "AFRO:NIGERIA:TARABA:GASHAKA": 8519.1, - "AFRO:NIGERIA:TARABA:GASSOL": 5310.6, - "AFRO:NIGERIA:TARABA:IBI": 2681.6, - "AFRO:NIGERIA:TARABA:JALINGO": 402.9, - "AFRO:NIGERIA:TARABA:KARIM_LAMIDO": 6120.9, - "AFRO:NIGERIA:TARABA:KURMI": 4505.9, - "AFRO:NIGERIA:TARABA:LAU": 1479.6, - "AFRO:NIGERIA:TARABA:SARDAUNA": 4751.2, - "AFRO:NIGERIA:TARABA:TAKUM": 3111.4, - "AFRO:NIGERIA:TARABA:USSA": 950.2, - "AFRO:NIGERIA:TARABA:WUKARI": 4286.4, - "AFRO:NIGERIA:TARABA:YORRO": 1165.0, - "AFRO:NIGERIA:TARABA:ZING": 875.5, - "AFRO:NIGERIA:YOBE:BADE": 1126.1, - "AFRO:NIGERIA:YOBE:BURSARI": 3654.3, - "AFRO:NIGERIA:YOBE:DAMATURU": 2381.4, - "AFRO:NIGERIA:YOBE:FIKA": 2863.4, - "AFRO:NIGERIA:YOBE:FUNE": 5654.8, - "AFRO:NIGERIA:YOBE:GEIDAM": 3941.4, - "AFRO:NIGERIA:YOBE:GUJBA": 3355.9, - "AFRO:NIGERIA:YOBE:GULANI": 2376.5, - "AFRO:NIGERIA:YOBE:JAKUSKO": 3407.6, - "AFRO:NIGERIA:YOBE:KARASUWA": 1326.9, - "AFRO:NIGERIA:YOBE:MACHINA": 1362.3, - "AFRO:NIGERIA:YOBE:NANGERE": 1151.3, - "AFRO:NIGERIA:YOBE:NGURU": 726.0, - "AFRO:NIGERIA:YOBE:POTISKUM": 427.1, - "AFRO:NIGERIA:YOBE:TARMUWA": 4004.6, - "AFRO:NIGERIA:YOBE:YUNUSARI": 3733.2, - "AFRO:NIGERIA:YOBE:YUSUFARI": 4434.9, - "AFRO:NIGERIA:ZAMFARA:ANKA": 2590.7, - "AFRO:NIGERIA:ZAMFARA:BAKURA": 1787.3, - "AFRO:NIGERIA:ZAMFARA:BIRNIN_MAGAJI_KIYAW": 1239.1, - "AFRO:NIGERIA:ZAMFARA:BUKKUYUM": 3766.8, - "AFRO:NIGERIA:ZAMFARA:BUNGUDU": 2085.6, - "AFRO:NIGERIA:ZAMFARA:GUMMI": 2954.6, - "AFRO:NIGERIA:ZAMFARA:GUSAU": 2037.5, - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA": 915.2, - "AFRO:NIGERIA:ZAMFARA:MARADUN": 2660.7, - "AFRO:NIGERIA:ZAMFARA:MARU": 7450.1, - "AFRO:NIGERIA:ZAMFARA:SHINKAFI": 925.0, - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA": 1543.0, - "AFRO:NIGERIA:ZAMFARA:TSAFE": 1939.7, - "AFRO:NIGERIA:ZAMFARA:ZURMI": 2521.9 -} - -#******************************************************************************** - - - - - - - diff --git a/model_measles_nga01/Assets/python/refdat_birthrate.py b/model_measles_nga01/Assets/python/refdat_birthrate.py deleted file mode 100644 index 02a375c4..00000000 --- a/model_measles_nga01/Assets/python/refdat_birthrate.py +++ /dev/null @@ -1,92 +0,0 @@ -#******************************************************************************** -# -# Birth rate data -# -#******************************************************************************** - -data_dict = \ -{ - "AFRO:NIGERIA:BENUE": - 35.9/1000.0/365.0, - "AFRO:NIGERIA:FCT_ABUJA": - 34.5/1000.0/365.0, - "AFRO:NIGERIA:KOGI": - 27.9/1000.0/365.0, - "AFRO:NIGERIA:KWARA": - 34.1/1000.0/365.0, - "AFRO:NIGERIA:NASARAWA": - 37.0/1000.0/365.0, - "AFRO:NIGERIA:NIGER": - 38.4/1000.0/365.0, - "AFRO:NIGERIA:PLATEAU": - 36.5/1000.0/365.0, - "AFRO:NIGERIA:ADAMAWA": - 42.5/1000.0/365.0, - "AFRO:NIGERIA:BAUCHI": - 54.0/1000.0/365.0, - "AFRO:NIGERIA:BORNO": - 35.3/1000.0/365.0, - "AFRO:NIGERIA:GOMBE": - 45.6/1000.0/365.0, - "AFRO:NIGERIA:TARABA": - 46.2/1000.0/365.0, - "AFRO:NIGERIA:YOBE": - 42.9/1000.0/365.0, - "AFRO:NIGERIA:JIGAWA": - 52.6/1000.0/365.0, - "AFRO:NIGERIA:KADUNA": - 32.7/1000.0/365.0, - "AFRO:NIGERIA:KANO": - 41.1/1000.0/365.0, - "AFRO:NIGERIA:KATSINA": - 50.1/1000.0/365.0, - "AFRO:NIGERIA:KEBBI": - 41.7/1000.0/365.0, - "AFRO:NIGERIA:SOKOTO": - 50.4/1000.0/365.0, - "AFRO:NIGERIA:ZAMFARA": - 57.4/1000.0/365.0, - "AFRO:NIGERIA:ABIA": - 30.1/1000.0/365.0, - "AFRO:NIGERIA:ANAMBRA": - 33.4/1000.0/365.0, - "AFRO:NIGERIA:EBONYI": - 37.9/1000.0/365.0, - "AFRO:NIGERIA:ENUGU": - 34.8/1000.0/365.0, - "AFRO:NIGERIA:IMO": - 32.3/1000.0/365.0, - "AFRO:NIGERIA:AKWA_IBOM": - 29.8/1000.0/365.0, - "AFRO:NIGERIA:BAYELSA": - 34.3/1000.0/365.0, - "AFRO:NIGERIA:CROSS_RIVER": - 37.0/1000.0/365.0, - "AFRO:NIGERIA:DELTA": - 33.1/1000.0/365.0, - "AFRO:NIGERIA:EDO": - 31.5/1000.0/365.0, - "AFRO:NIGERIA:RIVERS": - 34.5/1000.0/365.0, - "AFRO:NIGERIA:EKITI": - 31.3/1000.0/365.0, - "AFRO:NIGERIA:LAGOS": - 33.6/1000.0/365.0, - "AFRO:NIGERIA:OGUN": - 37.6/1000.0/365.0, - "AFRO:NIGERIA:ONDO": - 34.5/1000.0/365.0, - "AFRO:NIGERIA:OSUN": - 30.4/1000.0/365.0, - "AFRO:NIGERIA:OYO": - 34.1/1000.0/365.0 -} - -#******************************************************************************** - - - - - - - diff --git a/model_measles_nga01/Assets/python/refdat_deathrate.py b/model_measles_nga01/Assets/python/refdat_deathrate.py deleted file mode 100644 index 76881be4..00000000 --- a/model_measles_nga01/Assets/python/refdat_deathrate.py +++ /dev/null @@ -1,89 +0,0 @@ -#******************************************************************************** -# -# Mortality rate data -# -#******************************************************************************** - -data_dict = \ -{ - 'BIN_EDGES': - [ 0.6, 29.5, 29.6, 359.5, 359.6, 1829.5, - 1829.6, 3659.5, 3659.6, 5489.5, 5489.6, 7289.5, - 7289.6, 9119.5, 9119.6, 10949.5, 10949.6, 12779.5, - 12779.6, 14609.5, 14609.6, 16439.5, 16439.6, 18239.5, - 18239.6, 20069.5, 20069.6, 21899.5, 21899.6, 23729.5, - 23729.6, 25559.5, 25559.6, 27389.5, 27389.6, 29189.5, - 29189.6, 31019.5, 31019.6, 32849.5, 32849.6, 34679.5, - 34679.6, 36509.5, 36509.6, 38339.5, 38339.6, 40139.5, - 40139.6, 41969.5, 41969.6, 43799.5, 43799.6, 43829.5], - - 'AFRO:NIGERIA:NORTH_CENTRAL': - [1.23e-3, 1.23e-3, 9.54e-5, 9.54e-5, 4.64e-5, 4.64e-5, - 1.22e-6, 1.22e-6, 7.27e-5, 7.27e-5, 2.62e-5, 2.62e-5, - 1.69e-6, 1.69e-6, 2.20e-6, 2.20e-6, 2.56e-5, 2.56e-5, - 2.90e-5, 2.90e-5, 2.01e-5, 2.01e-5, 1.36e-5, 1.36e-5, - 1.90e-5, 1.90e-5, 3.36e-5, 3.36e-5, 5.66e-5, 5.66e-5, - 9.15e-5, 9.15e-5, 1.43e-4, 1.43e-4, 2.16e-4, 2.16e-4, - 3.18e-4, 3.18e-4, 4.58e-4, 4.58e-4, 6.45e-4, 6.45e-4, - 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, - 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0], - 'AFRO:NIGERIA:NORTH_EAST': - [1.51e-3, 1.51e-3, 1.02e-4, 1.02e-4, 6.42e-5, 6.42e-5, - 1.22e-6, 1.22e-6, 7.27e-5, 7.27e-5, 2.62e-5, 2.62e-5, - 1.69e-6, 1.69e-6, 2.20e-6, 2.20e-6, 2.56e-5, 2.56e-5, - 2.90e-5, 2.90e-5, 2.01e-5, 2.01e-5, 1.36e-5, 1.36e-5, - 1.90e-5, 1.90e-5, 3.36e-5, 3.36e-5, 5.66e-5, 5.66e-5, - 9.15e-5, 9.15e-5, 1.43e-4, 1.43e-4, 2.16e-4, 2.16e-4, - 3.18e-4, 3.18e-4, 4.58e-4, 4.58e-4, 6.45e-4, 6.45e-4, - 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, - 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0], - 'AFRO:NIGERIA:NORTH_WEST': - [1.55e-3, 1.55e-3, 1.43e-4, 1.43e-4, 7.55e-5, 7.55e-5, - 1.22e-6, 1.22e-6, 7.27e-5, 7.27e-5, 2.62e-5, 2.62e-5, - 1.69e-6, 1.69e-6, 2.20e-6, 2.20e-6, 2.56e-5, 2.56e-5, - 2.90e-5, 2.90e-5, 2.01e-5, 2.01e-5, 1.36e-5, 1.36e-5, - 1.90e-5, 1.90e-5, 3.36e-5, 3.36e-5, 5.66e-5, 5.66e-5, - 9.15e-5, 9.15e-5, 1.43e-4, 1.43e-4, 2.16e-4, 2.16e-4, - 3.18e-4, 3.18e-4, 4.58e-4, 4.58e-4, 6.45e-4, 6.45e-4, - 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, - 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0], - 'AFRO:NIGERIA:SOUTH_EAST': - [1.30e-3, 1.30e-3, 1.40e-4, 1.40e-4, 3.78e-5, 3.78e-5, - 1.22e-6, 1.22e-6, 7.27e-5, 7.27e-5, 2.62e-5, 2.62e-5, - 1.69e-6, 1.69e-6, 2.20e-6, 2.20e-6, 2.56e-5, 2.56e-5, - 2.90e-5, 2.90e-5, 2.01e-5, 2.01e-5, 1.36e-5, 1.36e-5, - 1.90e-5, 1.90e-5, 3.36e-5, 3.36e-5, 5.66e-5, 5.66e-5, - 9.15e-5, 9.15e-5, 1.43e-4, 1.43e-4, 2.16e-4, 2.16e-4, - 3.18e-4, 3.18e-4, 4.58e-4, 4.58e-4, 6.45e-4, 6.45e-4, - 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, - 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0], - 'AFRO:NIGERIA:SOUTH_SOUTH': - [1.12e-3, 1.12e-3, 7.98e-5, 7.98e-5, 2.42e-5, 2.42e-5, - 1.22e-6, 1.22e-6, 7.27e-5, 7.27e-5, 2.62e-5, 2.62e-5, - 1.69e-6, 1.69e-6, 2.20e-6, 2.20e-6, 2.56e-5, 2.56e-5, - 2.90e-5, 2.90e-5, 2.01e-5, 2.01e-5, 1.36e-5, 1.36e-5, - 1.90e-5, 1.90e-5, 3.36e-5, 3.36e-5, 5.66e-5, 5.66e-5, - 9.15e-5, 9.15e-5, 1.43e-4, 1.43e-4, 2.16e-4, 2.16e-4, - 3.18e-4, 3.18e-4, 4.58e-4, 4.58e-4, 6.45e-4, 6.45e-4, - 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, - 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0], - 'AFRO:NIGERIA:SOUTH_WEST': - [1.37e-3, 1.37e-3, 6.43e-5, 6.43e-5, 2.14e-5, 2.14e-5, - 1.22e-6, 1.22e-6, 7.27e-5, 7.27e-5, 2.62e-5, 2.62e-5, - 1.69e-6, 1.69e-6, 2.20e-6, 2.20e-6, 2.56e-5, 2.56e-5, - 2.90e-5, 2.90e-5, 2.01e-5, 2.01e-5, 1.36e-5, 1.36e-5, - 1.90e-5, 1.90e-5, 3.36e-5, 3.36e-5, 5.66e-5, 5.66e-5, - 9.15e-5, 9.15e-5, 1.43e-4, 1.43e-4, 2.16e-4, 2.16e-4, - 3.18e-4, 3.18e-4, 4.58e-4, 4.58e-4, 6.45e-4, 6.45e-4, - 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, - 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0, 1.00e-0] -} - -#******************************************************************************** - - - - - - - diff --git a/model_measles_nga01/Assets/python/refdat_location_100km.py b/model_measles_nga01/Assets/python/refdat_location_100km.py deleted file mode 100644 index fc8ae978..00000000 --- a/model_measles_nga01/Assets/python/refdat_location_100km.py +++ /dev/null @@ -1,18394 +0,0 @@ -#******************************************************************************** -# -# Location data -# Longitude and latitude data (x,y) -# -#******************************************************************************** - -data_dict = \ -{ - "AFRO:NIGERIA:ABIA:ABA_NORTH:A000": - ( 7.363510, 5.111383), - "AFRO:NIGERIA:ABIA:ABA_SOUTH:A000": - ( 7.351331, 5.076646), - "AFRO:NIGERIA:ABIA:AROCHUKWU:A000": - ( 7.853222, 5.476995), - "AFRO:NIGERIA:ABIA:AROCHUKWU:A001": - ( 7.675360, 5.575118), - "AFRO:NIGERIA:ABIA:AROCHUKWU:A002": - ( 7.923784, 5.407217), - "AFRO:NIGERIA:ABIA:AROCHUKWU:A003": - ( 7.750443, 5.551950), - "AFRO:NIGERIA:ABIA:BENDE:A000": - ( 7.611558, 5.706473), - "AFRO:NIGERIA:ABIA:BENDE:A001": - ( 7.613568, 5.605525), - "AFRO:NIGERIA:ABIA:BENDE:A002": - ( 7.679334, 5.778530), - "AFRO:NIGERIA:ABIA:BENDE:A003": - ( 7.538918, 5.646989), - "AFRO:NIGERIA:ABIA:BENDE:A004": - ( 7.646413, 5.496750), - "AFRO:NIGERIA:ABIA:BENDE:A005": - ( 7.584455, 5.795486), - "AFRO:NIGERIA:ABIA:IKWUANO:A000": - ( 7.546867, 5.369971), - "AFRO:NIGERIA:ABIA:IKWUANO:A001": - ( 7.581875, 5.449019), - "AFRO:NIGERIA:ABIA:IKWUANO:A002": - ( 7.616081, 5.357400), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_NORTH:A000": - ( 7.476172, 5.373533), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_NORTH:A001": - ( 7.357438, 5.368606), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_NORTH:A002": - ( 7.404055, 5.418592), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_SOUTH:A000": - ( 7.407669, 5.271722), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_SOUTH:A001": - ( 7.316524, 5.285272), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_SOUTH:A002": - ( 7.468441, 5.297701), - "AFRO:NIGERIA:ABIA:ISUIKWUATO:A000": - ( 7.512212, 5.730907), - "AFRO:NIGERIA:ABIA:ISUIKWUATO:A001": - ( 7.432850, 5.745894), - "AFRO:NIGERIA:ABIA:ISUIKWUATO:A002": - ( 7.423643, 5.841211), - "AFRO:NIGERIA:ABIA:ISUIKWUATO:A003": - ( 7.492178, 5.843249), - "AFRO:NIGERIA:ABIA:OBI_NGWA:A000": - ( 7.441717, 5.073720), - "AFRO:NIGERIA:ABIA:OBI_NGWA:A001": - ( 7.507587, 5.237804), - "AFRO:NIGERIA:ABIA:OBI_NGWA:A002": - ( 7.494452, 5.141532), - "AFRO:NIGERIA:ABIA:OBI_NGWA:A003": - ( 7.417492, 5.168899), - "AFRO:NIGERIA:ABIA:OHAFIA:A000": - ( 7.768234, 5.747011), - "AFRO:NIGERIA:ABIA:OHAFIA:A001": - ( 7.839423, 5.557898), - "AFRO:NIGERIA:ABIA:OHAFIA:A002": - ( 7.696557, 5.677157), - "AFRO:NIGERIA:ABIA:OHAFIA:A003": - ( 7.863871, 5.652919), - "AFRO:NIGERIA:ABIA:OHAFIA:A004": - ( 7.781000, 5.644466), - "AFRO:NIGERIA:ABIA:OSISIOMA_NGWA:A000": - ( 7.341154, 5.219138), - "AFRO:NIGERIA:ABIA:OSISIOMA_NGWA:A001": - ( 7.312907, 5.128139), - "AFRO:NIGERIA:ABIA:UGWUNAGBO:A000": - ( 7.349192, 5.014369), - "AFRO:NIGERIA:ABIA:UKWA_EAST:A000": - ( 7.363270, 4.928848), - "AFRO:NIGERIA:ABIA:UKWA_EAST:A001": - ( 7.480671, 5.030779), - "AFRO:NIGERIA:ABIA:UKWA_EAST:A002": - ( 7.448043, 4.905742), - "AFRO:NIGERIA:ABIA:UKWA_WEST:A000": - ( 7.237287, 4.913756), - "AFRO:NIGERIA:ABIA:UKWA_WEST:A001": - ( 7.269707, 5.019987), - "AFRO:NIGERIA:ABIA:UMUAHIA_NORTH:A000": - ( 7.474762, 5.589329), - "AFRO:NIGERIA:ABIA:UMUAHIA_NORTH:A001": - ( 7.526945, 5.537723), - "AFRO:NIGERIA:ABIA:UMUAHIA_NORTH:A002": - ( 7.446136, 5.662413), - "AFRO:NIGERIA:ABIA:UMUAHIA_SOUTH:A000": - ( 7.444722, 5.486698), - "AFRO:NIGERIA:ABIA:UMU_NNEOCHI:A000": - ( 7.415160, 5.926155), - "AFRO:NIGERIA:ABIA:UMU_NNEOCHI:A001": - ( 7.483567, 5.971091), - "AFRO:NIGERIA:ABIA:UMU_NNEOCHI:A002": - ( 7.307036, 5.953749), - "AFRO:NIGERIA:ABIA:UMU_NNEOCHI:A003": - ( 7.373574, 5.995619), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A000": - ( 12.097857, 9.578436), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A001": - ( 11.769838, 9.246689), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A002": - ( 12.297353, 9.445476), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A003": - ( 11.988927, 9.386709), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A004": - ( 11.909760, 9.290737), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A005": - ( 12.179832, 9.609122), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A006": - ( 12.082885, 9.471787), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A007": - ( 11.883052, 9.388177), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A008": - ( 11.994131, 9.311642), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A009": - ( 11.693817, 9.292164), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A010": - ( 11.805441, 9.325220), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A011": - ( 12.188772, 9.417166), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A012": - ( 12.237003, 9.514236), - "AFRO:NIGERIA:ADAMAWA:DEMSA:A013": - 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( 6.400442, 12.320836), - "AFRO:NIGERIA:ZAMFARA:MARU:A033": - ( 6.609945, 11.345579), - "AFRO:NIGERIA:ZAMFARA:MARU:A034": - ( 6.327910, 12.118461), - "AFRO:NIGERIA:ZAMFARA:MARU:A035": - ( 6.276307, 11.612600), - "AFRO:NIGERIA:ZAMFARA:MARU:A036": - ( 6.338131, 11.559489), - "AFRO:NIGERIA:ZAMFARA:MARU:A037": - ( 6.452448, 11.061756), - "AFRO:NIGERIA:ZAMFARA:MARU:A038": - ( 6.058040, 11.151996), - "AFRO:NIGERIA:ZAMFARA:MARU:A039": - ( 6.543671, 11.269246), - "AFRO:NIGERIA:ZAMFARA:MARU:A040": - ( 6.095976, 11.428745), - "AFRO:NIGERIA:ZAMFARA:MARU:A041": - ( 6.721974, 11.402352), - "AFRO:NIGERIA:ZAMFARA:MARU:A042": - ( 6.234958, 12.260430), - "AFRO:NIGERIA:ZAMFARA:MARU:A043": - ( 6.375147, 11.739424), - "AFRO:NIGERIA:ZAMFARA:MARU:A044": - ( 5.864467, 11.539275), - "AFRO:NIGERIA:ZAMFARA:MARU:A045": - ( 6.427618, 11.291485), - "AFRO:NIGERIA:ZAMFARA:MARU:A046": - ( 6.243763, 11.120285), - "AFRO:NIGERIA:ZAMFARA:MARU:A047": - ( 6.359277, 11.469538), - "AFRO:NIGERIA:ZAMFARA:MARU:A048": - ( 6.383431, 11.851180), - "AFRO:NIGERIA:ZAMFARA:MARU:A049": - ( 6.105582, 11.584813), - "AFRO:NIGERIA:ZAMFARA:MARU:A050": - ( 6.320655, 11.304500), - "AFRO:NIGERIA:ZAMFARA:MARU:A051": - ( 6.180659, 12.155870), - "AFRO:NIGERIA:ZAMFARA:MARU:A052": - ( 6.651181, 11.113446), - "AFRO:NIGERIA:ZAMFARA:MARU:A053": - ( 5.957301, 11.586386), - "AFRO:NIGERIA:ZAMFARA:MARU:A054": - ( 6.860849, 11.519470), - "AFRO:NIGERIA:ZAMFARA:MARU:A055": - ( 6.249858, 11.986006), - "AFRO:NIGERIA:ZAMFARA:MARU:A056": - ( 6.200923, 11.420737), - "AFRO:NIGERIA:ZAMFARA:MARU:A057": - ( 6.580128, 11.179786), - "AFRO:NIGERIA:ZAMFARA:MARU:A058": - ( 6.707089, 11.303340), - "AFRO:NIGERIA:ZAMFARA:MARU:A059": - ( 6.083036, 11.092205), - "AFRO:NIGERIA:ZAMFARA:MARU:A060": - ( 6.260289, 11.025248), - "AFRO:NIGERIA:ZAMFARA:MARU:A061": - ( 6.316236, 11.152134), - "AFRO:NIGERIA:ZAMFARA:MARU:A062": - ( 6.387490, 11.644233), - "AFRO:NIGERIA:ZAMFARA:MARU:A063": - ( 6.249845, 11.222489), - "AFRO:NIGERIA:ZAMFARA:MARU:A064": - ( 6.551299, 11.437748), - "AFRO:NIGERIA:ZAMFARA:MARU:A065": - ( 6.329081, 12.027288), - "AFRO:NIGERIA:ZAMFARA:MARU:A066": - ( 6.195341, 11.585715), - "AFRO:NIGERIA:ZAMFARA:MARU:A067": - ( 6.294787, 11.400621), - "AFRO:NIGERIA:ZAMFARA:MARU:A068": - ( 6.614116, 11.527204), - "AFRO:NIGERIA:ZAMFARA:MARU:A069": - ( 6.567441, 11.075769), - "AFRO:NIGERIA:ZAMFARA:MARU:A070": - ( 6.323151, 12.269327), - "AFRO:NIGERIA:ZAMFARA:MARU:A071": - ( 6.448470, 11.900733), - "AFRO:NIGERIA:ZAMFARA:MARU:A072": - ( 6.405762, 11.139533), - "AFRO:NIGERIA:ZAMFARA:MARU:A073": - ( 5.952704, 11.500440), - "AFRO:NIGERIA:ZAMFARA:MARU:A074": - ( 6.158108, 11.161659), - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A000": - ( 6.452449, 12.975430), - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A001": - ( 6.411667, 13.089921), - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A002": - ( 6.618757, 12.987221), - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A003": - ( 6.308514, 13.133109), - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A004": - ( 6.495041, 13.061866), - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A005": - ( 6.321418, 13.053413), - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A006": - ( 6.549846, 12.952958), - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A007": - ( 6.223203, 13.071697), - "AFRO:NIGERIA:ZAMFARA:SHINKAFI:A008": - ( 6.694274, 12.967475), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A000": - ( 6.139048, 12.231811), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A001": - ( 5.992322, 12.465360), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A002": - ( 6.018925, 12.259184), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A003": - ( 6.178932, 12.321790), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A004": - ( 6.103695, 12.595929), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A005": - ( 6.101374, 12.489248), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A006": - ( 6.073643, 12.176782), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A007": - ( 5.951264, 12.189436), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A008": - ( 5.929557, 12.386174), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A009": - ( 6.214226, 12.401129), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A010": - ( 6.017643, 12.368351), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A011": - ( 6.111432, 12.404537), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A012": - ( 6.032061, 12.546702), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A013": - ( 5.932660, 12.285984), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA:A014": - ( 6.089464, 12.309464), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A000": - ( 6.883255, 11.932951), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A001": - ( 7.106734, 12.038110), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A002": - ( 6.787111, 11.601100), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A003": - ( 7.067770, 11.952871), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A004": - ( 6.921766, 12.040336), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A005": - ( 6.747979, 11.782890), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A006": - ( 6.724697, 11.877060), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A007": - ( 6.740189, 11.699469), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A008": - ( 6.850485, 12.023561), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A009": - ( 6.924825, 11.843305), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A010": - ( 6.845380, 11.775620), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A011": - ( 7.175003, 11.953640), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A012": - ( 7.022027, 11.851491), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A013": - ( 7.016418, 12.040796), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A014": - ( 6.973074, 11.945868), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A015": - ( 7.102610, 11.873966), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A016": - ( 6.818879, 11.860397), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A017": - ( 6.786098, 11.950355), - "AFRO:NIGERIA:ZAMFARA:TSAFE:A018": - ( 6.828711, 11.686897), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A000": - ( 6.824625, 12.890970), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A001": - ( 6.434876, 12.750782), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A002": - ( 7.014859, 12.759153), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A003": - ( 6.825426, 12.798908), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A004": - ( 6.777547, 13.070952), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A005": - ( 6.916725, 12.950594), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A006": - ( 6.616799, 12.869495), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A007": - ( 6.750085, 12.762904), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A008": - ( 6.505035, 12.875029), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A009": - ( 6.853786, 13.009682), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A010": - ( 6.917122, 12.862922), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A011": - ( 6.844843, 12.696974), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A012": - ( 6.542923, 12.794929), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A013": - ( 6.660193, 12.793753), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A014": - ( 6.416189, 12.898479), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A015": - ( 6.918422, 12.779609), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A016": - ( 6.689075, 13.066280), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A017": - ( 6.938343, 12.697663), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A018": - ( 7.015282, 12.853974), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A019": - ( 7.007615, 12.947333), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A020": - ( 6.780091, 12.969589), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A021": - ( 6.684132, 12.694143), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A022": - ( 6.723523, 12.874023), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A023": - ( 6.601210, 12.718932), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A024": - ( 6.765628, 12.656921) -} - -#******************************************************************************** \ No newline at end of file diff --git a/model_measles_nga01/Assets/python/refdat_location_admin02.py b/model_measles_nga01/Assets/python/refdat_location_admin02.py deleted file mode 100644 index f5579cc3..00000000 --- a/model_measles_nga01/Assets/python/refdat_location_admin02.py +++ /dev/null @@ -1,1567 +0,0 @@ -#******************************************************************************** -# -# Location data -# Longitude and latitude data (x,y) -# -#******************************************************************************** - -data_dict = \ -{ - "AFRO:NIGERIA:ABIA:ABA_NORTH": - ( 7.368223, 5.113088), - "AFRO:NIGERIA:ABIA:ABA_SOUTH": - ( 7.351661, 5.079282), - "AFRO:NIGERIA:ABIA:AROCHUKWU": - ( 7.816092, 5.500128), - "AFRO:NIGERIA:ABIA:BENDE": - ( 7.618994, 5.665434), - "AFRO:NIGERIA:ABIA:IKWUANO": - ( 7.583710, 5.400132), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_NORTH": - ( 7.415709, 5.389410), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_SOUTH": - ( 7.397509, 5.290634), - "AFRO:NIGERIA:ABIA:ISUIKWUATO": - ( 7.466377, 5.792421), - "AFRO:NIGERIA:ABIA:OBI_NGWA": - ( 7.464264, 5.155038), - "AFRO:NIGERIA:ABIA:OHAFIA": - ( 7.810641, 5.655266), - "AFRO:NIGERIA:ABIA:OSISIOMA_NGWA": - ( 7.329772, 5.180754), - "AFRO:NIGERIA:ABIA:UGWUNAGBO": - ( 7.351404, 5.016681), - "AFRO:NIGERIA:ABIA:UKWA_EAST": - ( 7.426031, 4.944944), - "AFRO:NIGERIA:ABIA:UKWA_WEST": - ( 7.247946, 4.942607), - "AFRO:NIGERIA:ABIA:UMUAHIA_NORTH": - ( 7.490242, 5.584498), - "AFRO:NIGERIA:ABIA:UMUAHIA_SOUTH": - ( 7.444820, 5.487519), - "AFRO:NIGERIA:ABIA:UMU_NNEOCHI": - ( 7.397195, 5.961933), - "AFRO:NIGERIA:ADAMAWA:DEMSA": - ( 12.009271, 9.399000), - "AFRO:NIGERIA:ADAMAWA:FUFORE": - ( 12.642475, 9.198286), - "AFRO:NIGERIA:ADAMAWA:GANYE": - ( 12.016673, 8.426980), - "AFRO:NIGERIA:ADAMAWA:GIREI": - ( 12.481988, 9.441270), - "AFRO:NIGERIA:ADAMAWA:GOMBI": - ( 12.472212, 10.189258), - "AFRO:NIGERIA:ADAMAWA:GUYUK": - ( 11.906989, 9.840792), - "AFRO:NIGERIA:ADAMAWA:HONG": - ( 12.928475, 10.307138), - "AFRO:NIGERIA:ADAMAWA:JADA": - ( 12.437498, 8.672830), - "AFRO:NIGERIA:ADAMAWA:LAMURDE": - ( 11.695070, 9.562556), - "AFRO:NIGERIA:ADAMAWA:MADAGALI": - ( 13.521537, 10.814753), - "AFRO:NIGERIA:ADAMAWA:MAIHA": - ( 13.162443, 9.850174), - "AFRO:NIGERIA:ADAMAWA:MAYO_BELWA": - ( 11.959350, 8.998614), - "AFRO:NIGERIA:ADAMAWA:MICHIKA": - ( 13.409945, 10.579876), - "AFRO:NIGERIA:ADAMAWA:MUBI_NORTH": - ( 13.351964, 10.355471), - "AFRO:NIGERIA:ADAMAWA:MUBI_SOUTH": - ( 13.306846, 10.179464), - "AFRO:NIGERIA:ADAMAWA:NUMAN": - ( 11.799071, 9.445453), - "AFRO:NIGERIA:ADAMAWA:SHELLENG": - 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"AFRO:NIGERIA:OYO:IBARAPA_CENTRAL": - ( 3.261682, 7.421671), - "AFRO:NIGERIA:OYO:IBARAPA_EAST": - ( 3.488021, 7.587754), - "AFRO:NIGERIA:OYO:IBARAPA_NORTH": - ( 3.168540, 7.635290), - "AFRO:NIGERIA:OYO:IDO": - ( 3.728583, 7.482098), - "AFRO:NIGERIA:OYO:IREPO": - ( 3.913676, 9.013280), - "AFRO:NIGERIA:OYO:ISEYIN": - ( 3.596727, 7.985915), - "AFRO:NIGERIA:OYO:ITESIWAJU": - ( 3.448487, 8.232147), - "AFRO:NIGERIA:OYO:IWAJOWA": - ( 2.998271, 8.018483), - "AFRO:NIGERIA:OYO:KAJOLA": - ( 3.354038, 8.016826), - "AFRO:NIGERIA:OYO:LAGELU": - ( 4.054693, 7.521965), - "AFRO:NIGERIA:OYO:OGBOMOSHO_NORTH": - ( 4.272263, 8.155050), - "AFRO:NIGERIA:OYO:OGBOMOSHO_SOUTH": - ( 4.214178, 8.104620), - "AFRO:NIGERIA:OYO:OGO_OLUWA": - ( 4.213117, 7.972462), - "AFRO:NIGERIA:OYO:OLORUNSOGO": - ( 4.077845, 8.700820), - "AFRO:NIGERIA:OYO:OLUYOLE": - ( 3.874919, 7.207752), - "AFRO:NIGERIA:OYO:ONA_ARA": - ( 4.036001, 7.256910), - "AFRO:NIGERIA:OYO:ORELOPE": - ( 3.802165, 8.804604), - "AFRO:NIGERIA:OYO:ORI_IRE": - ( 4.108210, 8.298746), - "AFRO:NIGERIA:OYO:OYO_EAST": - ( 4.035245, 7.877921), - "AFRO:NIGERIA:OYO:OYO_WEST": - ( 3.835013, 7.934126), - "AFRO:NIGERIA:OYO:SAKI_EAST": - ( 3.620699, 8.695789), - "AFRO:NIGERIA:OYO:SAKI_WEST": - ( 3.170115, 8.630411), - "AFRO:NIGERIA:OYO:SURULERE": - ( 4.414018, 8.089027), - "AFRO:NIGERIA:PLATEAU:BARKIN_LADI": - ( 8.907920, 9.529886), - "AFRO:NIGERIA:PLATEAU:BASSA": - ( 8.795472, 10.083466), - "AFRO:NIGERIA:PLATEAU:BOKKOS": - ( 8.931251, 9.212947), - "AFRO:NIGERIA:PLATEAU:JOS_EAST": - ( 9.106952, 9.881932), - "AFRO:NIGERIA:PLATEAU:JOS_NORTH": - ( 8.905727, 9.938534), - "AFRO:NIGERIA:PLATEAU:JOS_SOUTH": - ( 8.832962, 9.758736), - "AFRO:NIGERIA:PLATEAU:KANAM": - ( 10.108299, 9.486882), - "AFRO:NIGERIA:PLATEAU:KANKE": - ( 9.636264, 9.372582), - "AFRO:NIGERIA:PLATEAU:LANGTANG_NORTH": - ( 9.815771, 9.089709), - "AFRO:NIGERIA:PLATEAU:LANGTANG_SOUTH": - ( 9.817968, 8.599179), - "AFRO:NIGERIA:PLATEAU:MANGU": - ( 9.181928, 9.396552), - "AFRO:NIGERIA:PLATEAU:MIKANG": - ( 9.613052, 9.021855), - "AFRO:NIGERIA:PLATEAU:PANKSHIN": - ( 9.431422, 9.280158), - "AFRO:NIGERIA:PLATEAU:QUAAN_PAN": - ( 9.170365, 8.744517), - "AFRO:NIGERIA:PLATEAU:RIYOM": - ( 8.691106, 9.576114), - "AFRO:NIGERIA:PLATEAU:SHENDAM": - ( 9.535002, 8.713992), - "AFRO:NIGERIA:PLATEAU:WASE": - ( 10.216535, 9.064853), - "AFRO:NIGERIA:RIVERS:ABUA_ODUAL": - ( 6.561683, 4.830660), - "AFRO:NIGERIA:RIVERS:AHOADA_EAST": - ( 6.624363, 5.072139), - "AFRO:NIGERIA:RIVERS:AHOADA_WEST": - ( 6.502317, 5.020103), - "AFRO:NIGERIA:RIVERS:AKUKU_TORU": - ( 6.679017, 4.533176), - "AFRO:NIGERIA:RIVERS:ANDONI": - ( 7.424796, 4.501633), - "AFRO:NIGERIA:RIVERS:ASARI_TORU": - ( 6.846423, 4.743603), - "AFRO:NIGERIA:RIVERS:BONNY": - ( 7.192185, 4.462059), - "AFRO:NIGERIA:RIVERS:DEGEMA": - ( 6.915529, 4.541251), - "AFRO:NIGERIA:RIVERS:ELEME": - ( 7.142721, 4.777331), - "AFRO:NIGERIA:RIVERS:EMOHUA": - ( 6.777642, 5.011576), - "AFRO:NIGERIA:RIVERS:ETCHE": - ( 7.087929, 5.097166), - "AFRO:NIGERIA:RIVERS:GOKANA": - ( 7.244125, 4.751932), - "AFRO:NIGERIA:RIVERS:IKWERRE": - ( 6.899912, 5.067549), - "AFRO:NIGERIA:RIVERS:KHANA": - ( 7.428937, 4.693733), - "AFRO:NIGERIA:RIVERS:OBIO_AKPOR": - ( 6.997533, 4.864274), - "AFRO:NIGERIA:RIVERS:OGBA_EGBEMA_NDONI": - ( 6.632076, 5.411533), - "AFRO:NIGERIA:RIVERS:OGU_BOLO": - ( 7.207640, 4.649632), - "AFRO:NIGERIA:RIVERS:OKRIKA": - ( 7.083667, 4.641956), - "AFRO:NIGERIA:RIVERS:OMUMMA": - ( 7.232209, 5.086612), - "AFRO:NIGERIA:RIVERS:OPOBO_NKORO": - ( 7.507242, 4.525469), - "AFRO:NIGERIA:RIVERS:OYIGBO": - ( 7.307975, 4.834767), - "AFRO:NIGERIA:RIVERS:PORT_HARCOURT": - ( 7.024031, 4.777612), - "AFRO:NIGERIA:RIVERS:TAI": - ( 7.249639, 4.757180), - "AFRO:NIGERIA:SOKOTO:BINJI": - ( 4.775915, 13.194492), - "AFRO:NIGERIA:SOKOTO:BODINGA": - ( 5.214852, 12.797952), - "AFRO:NIGERIA:SOKOTO:DANGE_SHUNI": - ( 5.423366, 12.833662), - "AFRO:NIGERIA:SOKOTO:GADA": - ( 5.677306, 13.696212), - "AFRO:NIGERIA:SOKOTO:GORONYO": - ( 5.791963, 13.361668), - "AFRO:NIGERIA:SOKOTO:GUDU": - ( 4.479925, 13.448712), - "AFRO:NIGERIA:SOKOTO:GWADABAWA": - ( 5.322002, 13.415827), - "AFRO:NIGERIA:SOKOTO:ILLELA": - ( 5.340719, 13.651118), - "AFRO:NIGERIA:SOKOTO:ISA": - ( 6.364819, 13.213491), - "AFRO:NIGERIA:SOKOTO:KEBBE": - ( 4.698873, 11.889903), - "AFRO:NIGERIA:SOKOTO:KWARE": - ( 5.321123, 13.138294), - "AFRO:NIGERIA:SOKOTO:RABAH": - ( 5.754423, 13.000610), - "AFRO:NIGERIA:SOKOTO:SABON_BIRNI": - ( 6.263462, 13.491669), - "AFRO:NIGERIA:SOKOTO:SHAGARI": - ( 5.110806, 12.540067), - "AFRO:NIGERIA:SOKOTO:SILAME": - ( 4.833673, 12.997574), - "AFRO:NIGERIA:SOKOTO:SOKOTO_NORTH": - ( 5.227705, 13.069896), - "AFRO:NIGERIA:SOKOTO:SOKOTO_SOUTH": - ( 5.260847, 13.040016), - "AFRO:NIGERIA:SOKOTO:TAMBUWAL": - ( 4.813348, 12.372746), - "AFRO:NIGERIA:SOKOTO:TANGAZA": - ( 4.960802, 13.507531), - "AFRO:NIGERIA:SOKOTO:TURETA": - ( 5.522275, 12.498457), - "AFRO:NIGERIA:SOKOTO:WAMAKKO": - ( 5.116444, 13.075158), - "AFRO:NIGERIA:SOKOTO:WURNO": - ( 5.535014, 13.243018), - "AFRO:NIGERIA:SOKOTO:YABO": - ( 4.948859, 12.789003), - "AFRO:NIGERIA:TARABA:ARDO_KOLA": - ( 11.164400, 8.826535), - "AFRO:NIGERIA:TARABA:BALI": - ( 10.977730, 8.140708), - "AFRO:NIGERIA:TARABA:DONGA": - ( 10.249453, 7.635009), - "AFRO:NIGERIA:TARABA:GASHAKA": - ( 11.373174, 7.494284), - "AFRO:NIGERIA:TARABA:GASSOL": - ( 10.556420, 8.472260), - "AFRO:NIGERIA:TARABA:IBI": - ( 9.808077, 8.346119), - "AFRO:NIGERIA:TARABA:JALINGO": - ( 11.326534, 8.942777), - "AFRO:NIGERIA:TARABA:KARIM_LAMIDO": - ( 10.873845, 9.176937), - "AFRO:NIGERIA:TARABA:KURMI": - ( 10.618767, 7.202004), - "AFRO:NIGERIA:TARABA:LAU": - ( 11.409923, 9.183253), - "AFRO:NIGERIA:TARABA:SARDAUNA": - ( 11.241892, 6.845611), - "AFRO:NIGERIA:TARABA:TAKUM": - ( 9.906119, 7.115854), - "AFRO:NIGERIA:TARABA:USSA": - ( 10.060984, 7.133469), - "AFRO:NIGERIA:TARABA:WUKARI": - ( 9.810344, 7.973640), - "AFRO:NIGERIA:TARABA:YORRO": - ( 11.555861, 8.896350), - "AFRO:NIGERIA:TARABA:ZING": - ( 11.728342, 8.889758), - "AFRO:NIGERIA:YOBE:BADE": - ( 10.929968, 12.723797), - "AFRO:NIGERIA:YOBE:BURSARI": - ( 11.437367, 12.714675), - "AFRO:NIGERIA:YOBE:DAMATURU": - ( 12.034058, 11.852810), - "AFRO:NIGERIA:YOBE:FIKA": - ( 11.252314, 11.346941), - "AFRO:NIGERIA:YOBE:FUNE": - ( 11.424678, 11.877816), - "AFRO:NIGERIA:YOBE:GEIDAM": - ( 12.110284, 12.679535), - "AFRO:NIGERIA:YOBE:GUJBA": - ( 11.970966, 11.391625), - "AFRO:NIGERIA:YOBE:GULANI": - ( 11.703712, 10.966285), - "AFRO:NIGERIA:YOBE:JAKUSKO": - ( 10.916035, 12.461951), - "AFRO:NIGERIA:YOBE:KARASUWA": - ( 10.764613, 12.978019), - "AFRO:NIGERIA:YOBE:MACHINA": - ( 9.984587, 13.028407), - "AFRO:NIGERIA:YOBE:NANGERE": - ( 10.990184, 11.828702), - "AFRO:NIGERIA:YOBE:NGURU": - ( 10.386269, 12.960908), - "AFRO:NIGERIA:YOBE:POTISKUM": - ( 11.146218, 11.681436), - "AFRO:NIGERIA:YOBE:TARMUWA": - ( 11.822789, 12.262452), - "AFRO:NIGERIA:YOBE:YUNUSARI": - ( 11.807059, 13.096044), - "AFRO:NIGERIA:YOBE:YUSUFARI": - ( 10.868392, 13.185242), - "AFRO:NIGERIA:ZAMFARA:ANKA": - ( 6.011457, 11.939976), - "AFRO:NIGERIA:ZAMFARA:BAKURA": - ( 5.845912, 12.616434), - "AFRO:NIGERIA:ZAMFARA:BIRNIN_MAGAJI_KIYAW": - ( 6.874846, 12.494024), - "AFRO:NIGERIA:ZAMFARA:BUKKUYUM": - ( 5.583922, 11.955491), - "AFRO:NIGERIA:ZAMFARA:BUNGUDU": - ( 6.571836, 12.087719), - "AFRO:NIGERIA:ZAMFARA:GUMMI": - ( 5.117283, 12.048822), - "AFRO:NIGERIA:ZAMFARA:GUSAU": - ( 6.798690, 12.036160), - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA": - ( 6.601182, 12.510930), - "AFRO:NIGERIA:ZAMFARA:MARADUN": - ( 6.268816, 12.736015), - "AFRO:NIGERIA:ZAMFARA:MARU": - ( 6.362734, 11.530668), - "AFRO:NIGERIA:ZAMFARA:SHINKAFI": - ( 6.451864, 13.033178), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA": - ( 6.057212, 12.362068), - "AFRO:NIGERIA:ZAMFARA:TSAFE": - ( 6.912216, 11.876822), - "AFRO:NIGERIA:ZAMFARA:ZURMI": - ( 6.766430, 12.845502) -} - -#******************************************************************************** - - - - - - - diff --git a/model_measles_nga01/Assets/python/refdat_population_100km.py b/model_measles_nga01/Assets/python/refdat_population_100km.py deleted file mode 100644 index 90406be8..00000000 --- a/model_measles_nga01/Assets/python/refdat_population_100km.py +++ /dev/null @@ -1,18393 +0,0 @@ -#******************************************************************************** -# -# Population data -# -#******************************************************************************** - -data_dict = \ -{ - "AFRO:NIGERIA:ABIA:ABA_NORTH:A000": - ( 296036, 2015), - "AFRO:NIGERIA:ABIA:ABA_SOUTH:A000": - ( 342075, 2015), - "AFRO:NIGERIA:ABIA:AROCHUKWU:A000": - ( 29960, 2015), - "AFRO:NIGERIA:ABIA:AROCHUKWU:A001": - ( 83339, 2015), - "AFRO:NIGERIA:ABIA:AROCHUKWU:A002": - ( 17138, 2015), - "AFRO:NIGERIA:ABIA:AROCHUKWU:A003": - ( 22285, 2015), - "AFRO:NIGERIA:ABIA:BENDE:A000": - ( 20084, 2015), - "AFRO:NIGERIA:ABIA:BENDE:A001": - ( 76056, 2015), - "AFRO:NIGERIA:ABIA:BENDE:A002": - ( 17056, 2015), - "AFRO:NIGERIA:ABIA:BENDE:A003": - ( 40921, 2015), - "AFRO:NIGERIA:ABIA:BENDE:A004": - ( 45501, 2015), - "AFRO:NIGERIA:ABIA:BENDE:A005": - ( 16405, 2015), - "AFRO:NIGERIA:ABIA:IKWUANO:A000": - ( 69528, 2015), - "AFRO:NIGERIA:ABIA:IKWUANO:A001": - ( 48022, 2015), - "AFRO:NIGERIA:ABIA:IKWUANO:A002": - ( 32225, 2015), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_NORTH:A000": - ( 89921, 2015), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_NORTH:A001": - ( 73782, 2015), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_NORTH:A002": - ( 93043, 2015), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_SOUTH:A000": - ( 57100, 2015), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_SOUTH:A001": - ( 96710, 2015), - "AFRO:NIGERIA:ABIA:ISIALA_NGWA_SOUTH:A002": - ( 88764, 2015), - "AFRO:NIGERIA:ABIA:ISUIKWUATO:A000": - ( 12701, 2015), - "AFRO:NIGERIA:ABIA:ISUIKWUATO:A001": - ( 63386, 2015), - "AFRO:NIGERIA:ABIA:ISUIKWUATO:A002": - ( 66633, 2015), - "AFRO:NIGERIA:ABIA:ISUIKWUATO:A003": - ( 48292, 2015), - "AFRO:NIGERIA:ABIA:OBI_NGWA:A000": - ( 67120, 2015), - "AFRO:NIGERIA:ABIA:OBI_NGWA:A001": - ( 192074, 2015), - "AFRO:NIGERIA:ABIA:OBI_NGWA:A002": - ( 148080, 2015), - "AFRO:NIGERIA:ABIA:OBI_NGWA:A003": - ( 57864, 2015), - "AFRO:NIGERIA:ABIA:OHAFIA:A000": - ( 55542, 2015), - "AFRO:NIGERIA:ABIA:OHAFIA:A001": - ( 71492, 2015), - "AFRO:NIGERIA:ABIA:OHAFIA:A002": - ( 36542, 2015), - "AFRO:NIGERIA:ABIA:OHAFIA:A003": - ( 26927, 2015), - "AFRO:NIGERIA:ABIA:OHAFIA:A004": - ( 20784, 2015), - "AFRO:NIGERIA:ABIA:OSISIOMA_NGWA:A000": - ( 141742, 2015), - "AFRO:NIGERIA:ABIA:OSISIOMA_NGWA:A001": - 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( 4973, 2015), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A021": - ( 715, 2015), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A022": - ( 6214, 2015), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A023": - ( 1376, 2015), - "AFRO:NIGERIA:ZAMFARA:ZURMI:A024": - ( 10314, 2015) -} - -#******************************************************************************** \ No newline at end of file diff --git a/model_measles_nga01/Assets/python/refdat_population_admin02.py b/model_measles_nga01/Assets/python/refdat_population_admin02.py deleted file mode 100644 index 638dcbad..00000000 --- a/model_measles_nga01/Assets/python/refdat_population_admin02.py +++ /dev/null @@ -1,1566 +0,0 @@ -#******************************************************************************** -# -# Population data -# -#******************************************************************************** - -data_dict = \ -{ - "AFRO:NIGERIA:ABIA:ABA_NORTH": - ( 221797, 2015), - "AFRO:NIGERIA:ABIA:ABA_SOUTH": - ( 562018, 2015), - "AFRO:NIGERIA:ABIA:AROCHUKWU": - ( 186915, 2015), - 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( 289238, 2015), - "AFRO:NIGERIA:ZAMFARA:BUNGUDU": - ( 295798, 2015), - "AFRO:NIGERIA:ZAMFARA:GUMMI": - ( 283414, 2015), - "AFRO:NIGERIA:ZAMFARA:GUSAU": - ( 455577, 2015), - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA": - ( 348210, 2015), - "AFRO:NIGERIA:ZAMFARA:MARADUN": - ( 262672, 2015), - "AFRO:NIGERIA:ZAMFARA:MARU": - ( 419025, 2015), - "AFRO:NIGERIA:ZAMFARA:SHINKAFI": - ( 194528, 2015), - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA": - ( 275622, 2015), - "AFRO:NIGERIA:ZAMFARA:TSAFE": - ( 375816, 2015), - "AFRO:NIGERIA:ZAMFARA:ZURMI": - ( 324032, 2015) -} - -#******************************************************************************** - - - - - - - diff --git a/model_measles_nga01/README.rst b/model_measles_nga01/README.rst deleted file mode 100644 index 386469b4..00000000 --- a/model_measles_nga01/README.rst +++ /dev/null @@ -1,19 +0,0 @@ -=================== -model_measles_nga01 -=================== - -Documentation. - -Important features include: - -- Multi-node network used to represent regions of Nigeria at the 10km scale. -- Network infectivity contagion transfer between nodes. -- Spatially varying rates of routine immunization. -- Acquisition-transmission covariance. -- Pre-specified calendar of supplemental immunization activities (SIAs). -- Maternally derived immunity. -- Overdispersion of the infection rate. -- Maximum simulation duration based on elapsed time. -- Weighted agents to represent multiple individuals per agent. -- Age-based immunity initialization to approximate endemic transmission. -- Infectivity reservoir to represent persistent exogeneous importation. diff --git a/model_measles_nga01/experiment_meas_nga_base01/idmtools.ini b/model_measles_nga01/experiment_meas_nga_base01/idmtools.ini deleted file mode 100644 index fcb4e664..00000000 --- a/model_measles_nga01/experiment_meas_nga_base01/idmtools.ini +++ /dev/null @@ -1,2 +0,0 @@ -[COMPS] -type = COMPS \ No newline at end of file diff --git a/model_measles_nga01/experiment_meas_nga_base01/make01_param_dict.py b/model_measles_nga01/experiment_meas_nga_base01/make01_param_dict.py deleted file mode 100644 index c0177540..00000000 --- a/model_measles_nga01/experiment_meas_nga_base01/make01_param_dict.py +++ /dev/null @@ -1,88 +0,0 @@ -#******************************************************************************** -# -#******************************************************************************** - -import json - -import numpy as np - -#******************************************************************************* - -# This script makes a json dictionary that is used by the pre-processing script -# in EMOD. Variable names defined here will be available to use in creating -# the input files. Please don't change the variable name for 'EXP_NAME' or -# for 'NUM_SIMS' because those are also used in scripts outside of EMOD. - -# The pre-process script will open the json dict created by this method. For -# everything in the 'EXP_VARIABLE' key, that script will assume a list and -# get a value from that list based on the sim index. For everything in the -# 'EXP_CONSTANT' key, it will assume a single value and copy that value. - - - -# ***** Setup ***** -param_dict = dict() - -param_dict['EXP_NAME'] = 'MEAS-NGA-Base01' -param_dict['NUM_SIMS'] = 10 -param_dict['EXP_VARIABLE'] = dict() -param_dict['EXP_CONSTANT'] = dict() - -# Random number consistency -np.random.seed(4) - -# Convenience naming -NSIMS = param_dict['NUM_SIMS'] - - - -# ***** Specify sim-variable parameters ***** - -param_dict['EXP_VARIABLE']['run_number'] = list(range(NSIMS)) - - - -# ***** Constants for this experiment ***** - -# Reference year to start sim; number of years for sim to run -param_dict['EXP_CONSTANT']['start_year'] = 2008 -param_dict['EXP_CONSTANT']['run_years'] = 4.0 - -# R0 value -param_dict['EXP_CONSTANT']['R0'] = 14.0 - -# R0 seasonality -param_dict['EXP_CONSTANT']['R0_peak_day'] = 65.0 -param_dict['EXP_CONSTANT']['R0_peak_width'] = 45.0 -param_dict['EXP_CONSTANT']['R0_peak_magnitude'] = 1.3 - -# Importation rate per-100k per-day -param_dict['EXP_CONSTANT']['log10_import_rate'] = -0.50 - -# Parameters for gravity model for network connections -param_dict['EXP_CONSTANT']['net_inf_power'] = 2.0 -param_dict['EXP_CONSTANT']['net_inf_ln_mult'] = -2.0 -param_dict['EXP_CONSTANT']['net_inf_maxfrac'] = 0.1 - -# Correlation between acqusition and transmission heterogeneity -param_dict['EXP_CONSTANT']['corr_acq_trans'] = 0.9 - -# Individual level risk variance (acquisition multiplier; mean = 1.0; log-normal distribution) -param_dict['EXP_CONSTANT']['ind_variance_risk'] = 0.3 - -# Base agent weight; less than 5 may have memory issues -param_dict['EXP_CONSTANT']['agent_rate'] = 16.0 - -# Subdivide LGAs into 100km^2 regions -param_dict['EXP_CONSTANT']['use_10k_res'] = False - - - -# ***** Write parameter dictionary ***** - -with open('param_dict.json','w') as fid01: - json.dump(param_dict,fid01) - - - -#******************************************************************************* diff --git a/model_measles_nga01/experiment_meas_nga_base01/make02_launch_sims.py b/model_measles_nga01/experiment_meas_nga_base01/make02_launch_sims.py deleted file mode 100644 index b64d20c1..00000000 --- a/model_measles_nga01/experiment_meas_nga_base01/make02_launch_sims.py +++ /dev/null @@ -1,59 +0,0 @@ -#******************************************************************************* -# -#******************************************************************************* - -import os, sys - -from idmtools.core.platform_factory import Platform -from idmtools.entities.experiment import Experiment - -# Ought to go in emodpy -LOCAL_PATH = os.path.abspath(os.path.join('..','..','local_python')) -sys.path.insert(0, LOCAL_PATH) -from emod_exp import exp_from_def_file -from emod_reduce import FILENAME_ID - -# ****************************************************************************** - - -# Paths -PATH_EXP_DEF = os.path.abspath('param_dict.json') -PATH_PYTHON = os.path.abspath(os.path.join('..', 'Assets', 'python')) -PATH_DATA = os.path.abspath(os.path.join('..', 'Assets', 'data')) -PATH_EXE = os.path.abspath(os.path.join('..', '..', 'env_Debian12')) - - -# Start and experiment on COMPS -def run_sims(): - - # Prepare the platform - plat_obj = Platform(block = 'COMPS', - endpoint = 'https://comps.idmod.org', - environment = 'Calculon', - priority = 'Normal', - simulation_root = '$COMPS_PATH(USER)', - node_group = 'idm_abcd', - num_cores = '1', - num_retries = '0', - exclusive = 'False') - - # Create experiment object - exp_obj = exp_from_def_file(PATH_EXP_DEF, PATH_PYTHON, PATH_EXE, PATH_DATA) - - # Send experiment to COMPS; start processing - plat_obj.run_items(exp_obj) - - # Save experiment id to file - exp_obj.to_id_file(FILENAME_ID) - print() - print(exp_obj.uid.hex) - - return None - -# ****************************************************************************** - -if(__name__ == "__main__"): - - run_sims() - -# ****************************************************************************** \ No newline at end of file diff --git a/model_measles_nga01/experiment_meas_nga_base01/make03_pool_brick.py b/model_measles_nga01/experiment_meas_nga_base01/make03_pool_brick.py deleted file mode 100644 index dfc8ee0f..00000000 --- a/model_measles_nga01/experiment_meas_nga_base01/make03_pool_brick.py +++ /dev/null @@ -1,35 +0,0 @@ -#******************************************************************************* -# -#******************************************************************************* - -import os, json - -from idmtools.core.id_file import read_id_file - -# Ought to go in emodpy -import sys -LOCAL_PATH = os.path.abspath(os.path.join('..','..','local_python')) -sys.path.insert(0, LOCAL_PATH) -from emod_reduce import get_sim_files - -# ****************************************************************************** - -def get_data_brick(): - - # Get Experiment ID - (exp_id,_,_,_) = read_id_file('COMPS_ID.id') - - # Reduce output and write data brick - data_brick = get_sim_files(exp_id, LOCAL_PATH) - with open('data_brick.json', 'w') as fid01: - json.dump(data_brick, fid01) - - return None - -# ****************************************************************************** - -if(__name__ == "__main__"): - - get_data_brick() - -# ****************************************************************************** \ No newline at end of file diff --git a/model_measles_nga01/figure_clouds/make_fig_clouds.py b/model_measles_nga01/figure_clouds/make_fig_clouds.py deleted file mode 100644 index 9017c257..00000000 --- a/model_measles_nga01/figure_clouds/make_fig_clouds.py +++ /dev/null @@ -1,110 +0,0 @@ -#******************************************************************************* - -import os, sys, json - -import numpy as np -import matplotlib.pyplot as plt -import matplotlib.patches as patch -import matplotlib as mpl - -#******************************************************************************* - -DIRNAME = 'experiment_meas_gha_base01' -YMAX = 350 - -targfile = os.path.join('..',DIRNAME,'param_dict.json') -with open(targfile) as fid01: - param_dict = json.load(fid01) - -targfile = os.path.join('..',DIRNAME,'data_brick.json') -with open(targfile) as fid01: - data_brick = json.load(fid01) - -targfile = os.path.join('..',DIRNAME,'data_calib.json') -with open(targfile) as fid01: - calib_dict = json.load(fid01) - - -nsims = int(param_dict['NUM_SIMS']) - -tvals = data_brick.pop('tstamps') -ntstp = len(tvals) -infBlock = np.zeros((nsims,ntstp)) -sclVal = np.zeros((nsims,1)) -cdata = np.zeros(nsims) - -for sim_idx_str in data_brick: - try: - sim_idx = int(sim_idx_str) - except: - continue - infDat = np.array(data_brick[sim_idx_str]['timeseries']) - infBlock[sim_idx,:] = infDat - sclVal[sim_idx,0] = data_brick[sim_idx_str]['rep_rate'] - cdata[sim_idx] = calib_dict[sim_idx_str] - -# Scaling factor -infBlock = infBlock * sclVal - -# Figure -fig01 = plt.figure(figsize=(8,6)) - -axs01 = fig01.add_subplot(111) -plt.sca(axs01) - -axs01.grid(visible=True, which='major', ls='-', lw=0.5, label='') -axs01.grid(visible=True, which='minor', ls=':', lw=0.1) -axs01.set_axisbelow(True) - -gidx = (cdata > -4000) - -infBlock = infBlock[gidx,:] - -yval = np.mean(infBlock,axis=0) -xval = np.array(tvals)/365+1900 - -print(np.median(sclVal[gidx])) - -infDatSetSort = np.sort(infBlock,axis=0) -infDatSetSort = infDatSetSort - - -for patwid in [0.45,0.375,0.25]: - xydat = np.zeros((2*infDatSetSort.shape[1],2)) - xydat[:,0] = np.hstack((xval,xval[::-1])) - tidx = int((0.5-patwid)*infDatSetSort.shape[0]) - xydat[:,1] = np.hstack((infDatSetSort[tidx,:],infDatSetSort[-tidx,::-1])) - - polyShp = patch.Polygon(xydat, facecolor='C0', alpha=0.7-patwid, edgecolor=None) - axs01.add_patch(polyShp) - -axs01.plot(xval,yval,color='C0',linewidth=2) -axs01.set_ylabel('Monthly Cases - Simulated',fontsize=16) -axs01.set_xlim(2010, 2020) -axs01.set_ylim( 0, YMAX) - -ticloc = [2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020] -ticlab = ['','','','','','','','','','',''] -axs01.set_xticks(ticks=ticloc) -axs01.set_xticklabels(ticlab) -for k1 in ticloc[:-1]: - axs01.text(k1+0.5,-0.04*YMAX,str(k1),fontsize=11,ha='center') - -sia01 = np.array([40460,40460])/365+1900 -axs01.plot(sia01,[0,YMAX],color='c',linewidth=3,ls=':') -axs01.text(sia01[0]+0.2,0.9*YMAX,'SIA',fontsize=13) - -sia02 = np.array([41508,41508])/365+1900 -axs01.plot(sia02,[0,YMAX],color='c',linewidth=5,ls='--') -axs01.text(sia02[0]+0.2,0.9*YMAX,'RCV Catch-up',fontsize=13) - -sia03 = np.array([43365,43365])/365+1900 -axs01.plot(sia03,[0,YMAX],color='c',linewidth=3,ls=':') -axs01.text(sia03[0]+0.2,0.9*YMAX,'SIA',fontsize=13) - -plt.tight_layout() -plt.savefig('fig_clouds_base_01.png') -plt.close() - -#******************************************************************************* - diff --git a/model_measles_nga01/figure_clouds/make_fig_reference.py b/model_measles_nga01/figure_clouds/make_fig_reference.py deleted file mode 100644 index 858b72e2..00000000 --- a/model_measles_nga01/figure_clouds/make_fig_reference.py +++ /dev/null @@ -1,73 +0,0 @@ -#******************************************************************************* - -import os, sys, json - -sys.path.append(os.path.join('..','Assets','python')) - -import numpy as np -import matplotlib.pyplot as plt -import matplotlib.patches as patch -import matplotlib as mpl - -from dtk_post_process import ref_dat - -#******************************************************************************* - -DIRNAME = 'experiment_meas_gha_base01' -YMAX = 350 - -targfile = os.path.join('..',DIRNAME,'param_dict.json') -with open(targfile) as fid01: - param_dict = json.load(fid01) - -targfile = os.path.join('..',DIRNAME,'data_brick.json') -with open(targfile) as fid01: - dbrick = json.load(fid01) - -nsims = int(param_dict['NUM_SIMS']) -tvals = dbrick.pop('tstamps') - -# Figure -fig01 = plt.figure(figsize=(8,6)) - -axs01 = fig01.add_subplot(111) -plt.sca(axs01) - -axs01.grid(visible=True, which='major', ls='-', lw=0.5, label='') -axs01.grid(visible=True, which='minor', ls=':', lw=0.1) -axs01.set_axisbelow(True) - -yval = np.array(ref_dat) -xval = np.array(tvals)[:len(ref_dat)]/365+1900 - -axs01.bar(xval,yval,color='r',linewidth=0.5,edgecolor='k',width=0.9/12) -axs01.set_ylabel('Monthly Cases - Observed',fontsize=16) - -axs01.set_xlim(2010,2020) -axs01.set_ylim( 0, YMAX) - -ticloc = [2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020] -ticlab = ['','','','','','','','','','',''] -axs01.set_xticks(ticks=ticloc) -axs01.set_xticklabels(ticlab) -for k1 in ticloc[:-1]: - axs01.text(k1+0.5,-0.04*YMAX,str(k1),fontsize=11,ha='center') - -sia01 = np.array([40460,40460])/365+1900 -axs01.plot(sia01,[0,YMAX],color='c',linewidth=3,ls=':') -axs01.text(sia01[0]+0.2,0.9*YMAX,'SIA',fontsize=13) - -sia02 = np.array([41508,41508])/365+1900 -axs01.plot(sia02,[0,YMAX],color='c',linewidth=5,ls='--') -axs01.text(sia02[0]+0.2,0.9*YMAX,'RCV Catch-up',fontsize=13) - -sia03 = np.array([43365,43365])/365+1900 -axs01.plot(sia03,[0,YMAX],color='c',linewidth=3,ls=':') -axs01.text(sia03[0]+0.2,0.9*YMAX,'SIA',fontsize=13) - -plt.tight_layout() -plt.savefig('fig_reference_01.png') -plt.close() - -#******************************************************************************* - diff --git a/model_measles_nga01/figure_demog/make_fig_pyramids.py b/model_measles_nga01/figure_demog/make_fig_pyramids.py deleted file mode 100644 index c3cd9337..00000000 --- a/model_measles_nga01/figure_demog/make_fig_pyramids.py +++ /dev/null @@ -1,134 +0,0 @@ -#******************************************************************************* - -import os, json, sys - -sys.path.append(os.path.join('..','Assets','python')) - -import numpy as np -import matplotlib.pyplot as plt - -from dtk_post_process import tpop_xval, tpop_yval - -from dtk_post_process import pop_age_days -from dtk_post_process import gha_2010_frac, gha_2020_frac - -#******************************************************************************* - -DIRNAME = 'experiment_meas_gha_base01' - -xvals = np.array(tpop_xval) -yref = np.array(tpop_yval)/1e6 - -CM = np.array([ 70,130,180])/255 -CF = np.array([238,121,137])/255 - -# Sim outputs -tpath = os.path.join('..',DIRNAME) - -with open(os.path.join(tpath,'data_brick.json')) as fid01: - data_brick = json.load(fid01) - -with open(os.path.join(tpath,'param_dict.json')) as fid01: - param_dict = json.load(fid01) - -nsims = int(param_dict['NUM_SIMS']) -ntstp = int(param_dict['EXP_CONSTANT']['num_tsteps']) - -pyr_mat = np.zeros((nsims,int(ntstp/365)+1,20)) -for sim_idx_str in data_brick: - try: - sim_idx = int(sim_idx_str) - except: - continue - pyr_mat[sim_idx,:,:] = np.array(data_brick[sim_idx_str]['pyramid']) - -x_dat_list = [gha_2010_frac, gha_2020_frac] - -fig01 = plt.figure(figsize=(12,12)) - -pyr_mat_avg = np.mean(pyr_mat,axis=0) -pyr_mat_std = np.std(pyr_mat,axis=0) - -# Figures - Sims -for k1 in range(2, pyr_mat_avg.shape[0], 10): - - axs01 = fig01.add_subplot(int('22{:d}'.format(int((k1-2)/10)+1)), label=None) - plt.sca(axs01) - - axs01.grid(visible=True, which='major', ls='-', lw=0.5, label='') - axs01.grid(visible=True, which='minor', ls=':', lw=0.1) - axs01.set_axisbelow(True) - - axs01.set_xlabel('Percentage', fontsize=14) - axs01.set_ylabel('Age (yrs)', fontsize=14) - - if(k1 == 12): - axs02 = axs01.twinx() - axs02.set_ylabel('Simulation', fontsize=24) - axs02.set_yticks(ticks=[0,1]) - axs02.set_yticklabels(['','']) - - axs01.set_xlim( -8, 8) - axs01.set_ylim( 0, 100) - - ticloc = [-8, -6, -4, -2, 0, 2, 4, 6, 8] - ticlab = ['8', '6', '4', '2', '0', '2', '4', '6', '8'] - axs01.set_xticks(ticks=ticloc) - axs01.set_xticklabels(ticlab) - - ydat = np.array(pop_age_days)/365.0 - 2.5 - pop_dat = pyr_mat_avg[k1,:] - pop_dat_err = pyr_mat_std[k1,:] - tpop = np.sum(pop_dat) - - pop_dat_n = 100*pop_dat/tpop - pop_dat_n_err = 100*pop_dat_err/tpop - - axs01.barh(ydat[1:], pop_dat_n/2.0, height=4.75, xerr=pop_dat_n_err, color=CF) - axs01.barh(ydat[1:], -pop_dat_n/2.0, height=4.75, xerr=pop_dat_n_err, color=CM) - - axs01.text( -7, 92.5, '{:04d}'.format(2008+k1), fontsize=24) - axs01.text( 3, 87.5, 'Total Pop\n{:6.3f}M'.format(tpop/1e6), fontsize=18) - -# Figures - Reference -for k1 in range(len(x_dat_list)): - - axs01 = fig01.add_subplot(int('22{:d}'.format(k1+2+1)), label=None) - plt.sca(axs01) - - axs01.grid(visible=True, which='major', ls='-', lw=0.5, label='') - axs01.grid(visible=True, which='minor', ls=':', lw=0.1) - axs01.set_axisbelow(True) - - axs01.set_xlabel('Percentage', fontsize=14) - axs01.set_ylabel('Age (yrs)', fontsize=14) - - if(k1 == 1): - axs02 = axs01.twinx() - axs02.set_ylabel('Reference', fontsize=24) - axs02.set_yticks(ticks=[0,1]) - axs02.set_yticklabels(['','']) - - axs01.set_xlim( -8, 8) - axs01.set_ylim( 0, 100) - - ticloc = [-8, -6, -4, -2, 0, 2, 4, 6, 8] - ticlab = ['8', '6', '4', '2', '0', '2', '4', '6', '8'] - axs01.set_xticks(ticks=ticloc) - axs01.set_xticklabels(ticlab) - - ydat = np.array(pop_age_days)/365.0 - 2.5 - pop_dat = np.array(x_dat_list[k1]) - effpop = yref[10*k1+2] - - axs01.barh(ydat[1:], 100*pop_dat[:-1]/2.0, height=4.75, color=CF) - axs01.barh(ydat[1:], -100*pop_dat[:-1]/2.0, height=4.75, color=CM) - - axs01.text( -7, 92.5, '{:04d}'.format(2010+10*k1), fontsize=24) - axs01.text( 3, 87.5, 'Total Pop\n{:6.3f}M'.format(effpop), fontsize=18) - -plt.tight_layout() -plt.savefig('fig_pyr_01.png') -plt.close() - -#******************************************************************************* diff --git a/model_measles_nga01/figure_demog/make_fig_totpop.py b/model_measles_nga01/figure_demog/make_fig_totpop.py deleted file mode 100644 index 9a2d8ffc..00000000 --- a/model_measles_nga01/figure_demog/make_fig_totpop.py +++ /dev/null @@ -1,82 +0,0 @@ -#******************************************************************************* - -import os, json, sys - -sys.path.append(os.path.join('..','Assets','python')) - -import numpy as np -import matplotlib.pyplot as plt - -from dtk_post_process import tpop_xval, tpop_yval - -#******************************************************************************* - -DIRNAME = 'experiment_meas_gha_base01' - -xvals = np.array(tpop_xval) -yref = np.array(tpop_yval)/1e6 - -# Sim outputs -tpath = os.path.join('..',DIRNAME) - -with open(os.path.join(tpath,'data_brick.json')) as fid01: - data_brick = json.load(fid01) - -with open(os.path.join(tpath,'param_dict.json')) as fid01: - param_dict = json.load(fid01) - -nsims = int(param_dict['NUM_SIMS']) -ntstp = int(param_dict['EXP_CONSTANT']['num_tsteps']) - -pyr_mat = np.zeros((nsims,int(ntstp/365)+1,20)) -for sim_idx_str in data_brick: - try: - sim_idx = int(sim_idx_str) - except: - continue - pyr_mat[sim_idx,:,:] = np.array(data_brick[sim_idx_str]['pyramid']) - -# Figures -fig01 = plt.figure(figsize=(8,6)) - -axs01 = fig01.add_subplot(111, label=None) -plt.sca(axs01) - -axs01.grid(visible=True, which='major', ls='-', lw=0.5, label='') -axs01.grid(visible=True, which='minor', ls=':', lw=0.1) -axs01.set_axisbelow(True) - -axs01.set_xlabel('Year', fontsize=14) -axs01.set_ylabel('Ghana - Total Population (M)', fontsize=14) - -axs01.set_xlim( 2007.5, 2027) -axs01.set_ylim( 22, 38) - -ticloc = np.arange(2008, 2028) -ticlab = ['2008','','','','2012','','','', - '2016','','','','2020','','','', - '2024','','',''] -axs01.set_xticks(ticks=ticloc) -axs01.set_xticklabels(ticlab,fontsize=14) - -axs01.tick_params(axis='x', labelsize=14) -axs01.tick_params(axis='y', labelsize=14) - -pyr_mat_avg = np.mean(pyr_mat,axis=0) -pyr_mat_std = np.std(pyr_mat,axis=0) - -pop_dat = np.sum(pyr_mat_avg,axis=1) -pop_dat_err = np.sum(pyr_mat_std,axis=1) -nyear = pop_dat.shape[0] - -yvals = pop_dat/1e6 -yvals_err = pop_dat_err/1e6 - -axs01.errorbar(xvals[:nyear]-0.5, yvals, yerr=yvals_err, lw=2) -axs01.plot(xvals[:nyear], yref[:nyear], lw=0, c='k', marker='.', markersize=14, label='Data',zorder=4) - -plt.tight_layout() -plt.savefig('fig_totpop_01.png') -plt.close() - -#******************************************************************************* diff --git a/model_measles_nga02/Assets/data/NGA_MCV1.csv b/model_measles_nga02/Assets/data/NGA_MCV1.csv deleted file mode 100644 index 74cf23d6..00000000 --- a/model_measles_nga02/Assets/data/NGA_MCV1.csv +++ /dev/null @@ -1,774 +0,0 @@ -0.659,0.714,0.694,0.730,0.778,0.789,0.712,0.713,0.793,0.817,0.810,0.813,0.782,0.702,0.747,0.736,0.788,0.756,0.759,0.784 -0.656,0.712,0.692,0.727,0.771,0.782,0.704,0.703,0.787,0.813,0.805,0.808,0.778,0.696,0.737,0.728,0.780,0.749,0.752,0.779 -0.646,0.704,0.644,0.692,0.769,0.778,0.744,0.756,0.777,0.807,0.807,0.787,0.721,0.649,0.728,0.713,0.761,0.712,0.718,0.748 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"AFRO:NIGERIA:BENUE:GWER_EAST", - "AFRO:NIGERIA:BENUE:GWER_WEST", - "AFRO:NIGERIA:BENUE:KATSINA_ALA", - "AFRO:NIGERIA:BENUE:KONSHISHA", - "AFRO:NIGERIA:BENUE:KWANDE", - "AFRO:NIGERIA:BENUE:LOGO", - "AFRO:NIGERIA:BENUE:MAKURDI", - "AFRO:NIGERIA:BENUE:OBI", - "AFRO:NIGERIA:BENUE:OGBADIBO", - "AFRO:NIGERIA:BENUE:OHIMINI", - "AFRO:NIGERIA:BENUE:OJU", - "AFRO:NIGERIA:BENUE:OKPOKWU", - "AFRO:NIGERIA:BENUE:OTURKPO", - "AFRO:NIGERIA:BENUE:TARKA", - "AFRO:NIGERIA:BENUE:UKUM", - "AFRO:NIGERIA:BENUE:USHONGO", - "AFRO:NIGERIA:BENUE:VANDEIKYA", - "AFRO:NIGERIA:BORNO:ABADAM", - "AFRO:NIGERIA:BORNO:ASKIRA_UBA", - "AFRO:NIGERIA:BORNO:BAMA", - "AFRO:NIGERIA:BORNO:BAYO", - "AFRO:NIGERIA:BORNO:BIU", - "AFRO:NIGERIA:BORNO:CHIBOK", - "AFRO:NIGERIA:BORNO:DAMBOA", - "AFRO:NIGERIA:BORNO:DIKWA", - "AFRO:NIGERIA:BORNO:GUBIO", - "AFRO:NIGERIA:BORNO:GUZAMALA", - "AFRO:NIGERIA:BORNO:GWOZA", - "AFRO:NIGERIA:BORNO:HAWUL", - "AFRO:NIGERIA:BORNO:JERE", - "AFRO:NIGERIA:BORNO:KAGA", - "AFRO:NIGERIA:BORNO:KALA_BALGE", - "AFRO:NIGERIA:BORNO:KONDUGA", - "AFRO:NIGERIA:BORNO:KUKAWA", - "AFRO:NIGERIA:BORNO:KWAYA_KUSAR", - "AFRO:NIGERIA:BORNO:MAFA", - "AFRO:NIGERIA:BORNO:MAGUMERI", - "AFRO:NIGERIA:BORNO:MAIDUGURI", - "AFRO:NIGERIA:BORNO:MARTE", - "AFRO:NIGERIA:BORNO:MOBBAR", - "AFRO:NIGERIA:BORNO:MONGUNO", - "AFRO:NIGERIA:BORNO:NGALA", - "AFRO:NIGERIA:BORNO:NGANZAI", - "AFRO:NIGERIA:BORNO:SHANI", - "AFRO:NIGERIA:CROSS_RIVER:ABI", - "AFRO:NIGERIA:CROSS_RIVER:AKAMKPA", - "AFRO:NIGERIA:CROSS_RIVER:AKPABUYO", - "AFRO:NIGERIA:CROSS_RIVER:BAKASSI", - "AFRO:NIGERIA:CROSS_RIVER:BEKWARRA", - "AFRO:NIGERIA:CROSS_RIVER:BIASE", - "AFRO:NIGERIA:CROSS_RIVER:BOKI", - "AFRO:NIGERIA:CROSS_RIVER:CALABAR_MUNICIPAL", - "AFRO:NIGERIA:CROSS_RIVER:CALABAR_SOUTH", - "AFRO:NIGERIA:CROSS_RIVER:ETUNG", - "AFRO:NIGERIA:CROSS_RIVER:IKOM", - "AFRO:NIGERIA:CROSS_RIVER:OBANLIKU", - "AFRO:NIGERIA:CROSS_RIVER:OBUBRA", - "AFRO:NIGERIA:CROSS_RIVER:OBUDU", - "AFRO:NIGERIA:CROSS_RIVER:ODUKPANI", - "AFRO:NIGERIA:CROSS_RIVER:OGOJA", - "AFRO:NIGERIA:CROSS_RIVER:YAKURR", - "AFRO:NIGERIA:CROSS_RIVER:YALA", - "AFRO:NIGERIA:DELTA:ANIOCHA_NORTH", - "AFRO:NIGERIA:DELTA:ANIOCHA_SOUTH", - "AFRO:NIGERIA:DELTA:BOMADI", - "AFRO:NIGERIA:DELTA:BURUTU", - "AFRO:NIGERIA:DELTA:ETHIOPE_EAST", - "AFRO:NIGERIA:DELTA:ETHIOPE_WEST", - "AFRO:NIGERIA:DELTA:IKA_NORTH_EAST", - "AFRO:NIGERIA:DELTA:IKA_SOUTH", - "AFRO:NIGERIA:DELTA:ISOKO_NORTH", - "AFRO:NIGERIA:DELTA:ISOKO_SOUTH", - "AFRO:NIGERIA:DELTA:NDOKWA_EAST", - "AFRO:NIGERIA:DELTA:NDOKWA_WEST", - "AFRO:NIGERIA:DELTA:OKPE", - "AFRO:NIGERIA:DELTA:OSHIMILI_NORTH", - "AFRO:NIGERIA:DELTA:OSHIMILI_SOUTH", - "AFRO:NIGERIA:DELTA:PATANI", - "AFRO:NIGERIA:DELTA:SAPELE", - "AFRO:NIGERIA:DELTA:UDU", - "AFRO:NIGERIA:DELTA:UGHELLI_NORTH", - "AFRO:NIGERIA:DELTA:UGHELLI_SOUTH", - "AFRO:NIGERIA:DELTA:UKWUANI", - "AFRO:NIGERIA:DELTA:UVWIE", - "AFRO:NIGERIA:DELTA:WARRI_NORTH", - "AFRO:NIGERIA:DELTA:WARRI_SOUTH", - "AFRO:NIGERIA:DELTA:WARRI_SOUTH_WEST", - "AFRO:NIGERIA:EBONYI:ABAKALIKI", - "AFRO:NIGERIA:EBONYI:AFIKPO_NORTH", - "AFRO:NIGERIA:EBONYI:AFIKPO_SOUTH", - "AFRO:NIGERIA:EBONYI:EBONYI", - "AFRO:NIGERIA:EBONYI:EZZA_NORTH", - "AFRO:NIGERIA:EBONYI:EZZA_SOUTH", - "AFRO:NIGERIA:EBONYI:IKWO", - "AFRO:NIGERIA:EBONYI:ISHIELU", - "AFRO:NIGERIA:EBONYI:IVO", - "AFRO:NIGERIA:EBONYI:IZZI", - "AFRO:NIGERIA:EBONYI:OHAOZARA", - "AFRO:NIGERIA:EBONYI:OHAUKWU", - "AFRO:NIGERIA:EBONYI:ONICHA", - "AFRO:NIGERIA:EDO:AKOKO_EDO", - "AFRO:NIGERIA:EDO:EGOR", - "AFRO:NIGERIA:EDO:ESAN_CENTRAL", - "AFRO:NIGERIA:EDO:ESAN_NORTH_EAST", - "AFRO:NIGERIA:EDO:ESAN_SOUTH_EAST", - "AFRO:NIGERIA:EDO:ESAN_WEST", - "AFRO:NIGERIA:EDO:ETSAKO_CENTRAL", - "AFRO:NIGERIA:EDO:ETSAKO_EAST", - "AFRO:NIGERIA:EDO:ETSAKO_WEST", - "AFRO:NIGERIA:EDO:IGUEBEN", - "AFRO:NIGERIA:EDO:IKPOBA_OKHA", - "AFRO:NIGERIA:EDO:OREDO", - "AFRO:NIGERIA:EDO:ORHIONMWON", - "AFRO:NIGERIA:EDO:OVIA_NORTH_EAST", - "AFRO:NIGERIA:EDO:OVIA_SOUTH_WEST", - "AFRO:NIGERIA:EDO:OWAN_EAST", - "AFRO:NIGERIA:EDO:OWAN_WEST", - "AFRO:NIGERIA:EDO:UHUNMWONDE", - "AFRO:NIGERIA:EKITI:ADO_EKITI", - "AFRO:NIGERIA:EKITI:AIYEKIRE_GBONYIN", - "AFRO:NIGERIA:EKITI:EFON", - "AFRO:NIGERIA:EKITI:EKITI_EAST", - "AFRO:NIGERIA:EKITI:EKITI_SOUTH_WEST", - "AFRO:NIGERIA:EKITI:EKITI_WEST", - "AFRO:NIGERIA:EKITI:EMURE", - "AFRO:NIGERIA:EKITI:IDO_OSI", - "AFRO:NIGERIA:EKITI:IJERO", - "AFRO:NIGERIA:EKITI:IKERE", - "AFRO:NIGERIA:EKITI:IKOLE", - "AFRO:NIGERIA:EKITI:ILEJEMEJE", - "AFRO:NIGERIA:EKITI:IREPODUN_IFELODUN", - "AFRO:NIGERIA:EKITI:ISE_ORUN", - "AFRO:NIGERIA:EKITI:MOBA", - "AFRO:NIGERIA:EKITI:OYE", - "AFRO:NIGERIA:ENUGU:ANINRI", - "AFRO:NIGERIA:ENUGU:AWGU", - "AFRO:NIGERIA:ENUGU:ENUGU_EAST", - "AFRO:NIGERIA:ENUGU:ENUGU_NORTH", - "AFRO:NIGERIA:ENUGU:ENUGU_SOUTH", - "AFRO:NIGERIA:ENUGU:EZEAGU", - "AFRO:NIGERIA:ENUGU:IGBO_ETITI", - "AFRO:NIGERIA:ENUGU:IGBO_EZE_NORTH", - "AFRO:NIGERIA:ENUGU:IGBO_EZE_SOUTH", - "AFRO:NIGERIA:ENUGU:ISI_UZO", - "AFRO:NIGERIA:ENUGU:NKANU_EAST", - "AFRO:NIGERIA:ENUGU:NKANU_WEST", - "AFRO:NIGERIA:ENUGU:NSUKKA", - "AFRO:NIGERIA:ENUGU:OJI_RIVER", - "AFRO:NIGERIA:ENUGU:UDENU", - "AFRO:NIGERIA:ENUGU:UDI", - "AFRO:NIGERIA:ENUGU:UZO_UWANI", - "AFRO:NIGERIA:FCT_ABUJA:ABAJI", - "AFRO:NIGERIA:FCT_ABUJA:ABUJA_MUNICIPAL", - "AFRO:NIGERIA:FCT_ABUJA:BWARI", - "AFRO:NIGERIA:FCT_ABUJA:GWAGWALADA", - "AFRO:NIGERIA:FCT_ABUJA:KUJE", - "AFRO:NIGERIA:FCT_ABUJA:KWALI", - "AFRO:NIGERIA:GOMBE:AKKO", - "AFRO:NIGERIA:GOMBE:BALANGA", - "AFRO:NIGERIA:GOMBE:BILLIRI", - "AFRO:NIGERIA:GOMBE:DUKKU", - "AFRO:NIGERIA:GOMBE:FUNAKAYE", - "AFRO:NIGERIA:GOMBE:GOMBE", - "AFRO:NIGERIA:GOMBE:KALTUNGO", - "AFRO:NIGERIA:GOMBE:KWAMI", - "AFRO:NIGERIA:GOMBE:NAFADA_BAJOGA", - "AFRO:NIGERIA:GOMBE:SHOMGOM", - "AFRO:NIGERIA:GOMBE:YAMALTU_DEBA", - "AFRO:NIGERIA:IMO:ABOH_MBAISE", - "AFRO:NIGERIA:IMO:AHIAZU_MBAISE", - "AFRO:NIGERIA:IMO:EHIME_MBANO", - "AFRO:NIGERIA:IMO:EZINIHITTE", - "AFRO:NIGERIA:IMO:IDEATO_NORTH", - "AFRO:NIGERIA:IMO:IDEATO_SOUTH", - "AFRO:NIGERIA:IMO:IHITTE_UBOMA", - "AFRO:NIGERIA:IMO:IKEDURU", - "AFRO:NIGERIA:IMO:ISIALA_MBANO", - "AFRO:NIGERIA:IMO:ISU", - "AFRO:NIGERIA:IMO:MBAITOLI", - "AFRO:NIGERIA:IMO:NGOR_OKPALA", - "AFRO:NIGERIA:IMO:NJABA", - "AFRO:NIGERIA:IMO:NKWERRE", - "AFRO:NIGERIA:IMO:NWANGELE", - "AFRO:NIGERIA:IMO:OBOWO", - "AFRO:NIGERIA:IMO:OGUTA", - "AFRO:NIGERIA:IMO:OHAJI_EGBEMA", - "AFRO:NIGERIA:IMO:OKIGWE", - "AFRO:NIGERIA:IMO:ORLU", - "AFRO:NIGERIA:IMO:ORSU", - "AFRO:NIGERIA:IMO:ORU_EAST", - "AFRO:NIGERIA:IMO:ORU_WEST", - "AFRO:NIGERIA:IMO:OWERRI_MUNICIPAL", - "AFRO:NIGERIA:IMO:OWERRI_NORTH", - "AFRO:NIGERIA:IMO:OWERRI_WEST", - "AFRO:NIGERIA:IMO:UNUIMO", - "AFRO:NIGERIA:JIGAWA:AUYO", - "AFRO:NIGERIA:JIGAWA:BABURA", - "AFRO:NIGERIA:JIGAWA:BIRINIWA", - "AFRO:NIGERIA:JIGAWA:BIRNIN_KUDU", - "AFRO:NIGERIA:JIGAWA:BUJI", - "AFRO:NIGERIA:JIGAWA:DUTSE", - "AFRO:NIGERIA:JIGAWA:GAGARAWA", - "AFRO:NIGERIA:JIGAWA:GARKI", - "AFRO:NIGERIA:JIGAWA:GUMEL", - "AFRO:NIGERIA:JIGAWA:GURI", - "AFRO:NIGERIA:JIGAWA:GWARAM", - "AFRO:NIGERIA:JIGAWA:GWIWA", - "AFRO:NIGERIA:JIGAWA:HADEJIA", - "AFRO:NIGERIA:JIGAWA:JAHUN", - "AFRO:NIGERIA:JIGAWA:KAFIN_HAUSA", - "AFRO:NIGERIA:JIGAWA:KAUGAMA", - "AFRO:NIGERIA:JIGAWA:KAZAURE", - "AFRO:NIGERIA:JIGAWA:KIRI_KASAMMA", - "AFRO:NIGERIA:JIGAWA:KIYAWA", - "AFRO:NIGERIA:JIGAWA:MAIGATARI", - "AFRO:NIGERIA:JIGAWA:MALAM_MADORI", - "AFRO:NIGERIA:JIGAWA:MIGA", - "AFRO:NIGERIA:JIGAWA:RINGIM", - "AFRO:NIGERIA:JIGAWA:RONI", - "AFRO:NIGERIA:JIGAWA:SULE_TANKARKAR", - "AFRO:NIGERIA:JIGAWA:TAURA", - "AFRO:NIGERIA:JIGAWA:YANKWASHI", - "AFRO:NIGERIA:KADUNA:BIRNIN_GWARI", - "AFRO:NIGERIA:KADUNA:CHIKUN", - "AFRO:NIGERIA:KADUNA:GIWA", - "AFRO:NIGERIA:KADUNA:IGABI", - "AFRO:NIGERIA:KADUNA:IKARA", - "AFRO:NIGERIA:KADUNA:JABA", - "AFRO:NIGERIA:KADUNA:JEMAA", - "AFRO:NIGERIA:KADUNA:KACHIA", - "AFRO:NIGERIA:KADUNA:KADUNA_NORTH", - "AFRO:NIGERIA:KADUNA:KADUNA_SOUTH", - "AFRO:NIGERIA:KADUNA:KAGARKO", - "AFRO:NIGERIA:KADUNA:KAJURU", - "AFRO:NIGERIA:KADUNA:KAURA", - "AFRO:NIGERIA:KADUNA:KAURU", - "AFRO:NIGERIA:KADUNA:KUBAU", - "AFRO:NIGERIA:KADUNA:KUDAN", - "AFRO:NIGERIA:KADUNA:LERE", - "AFRO:NIGERIA:KADUNA:MAKARFI", - "AFRO:NIGERIA:KADUNA:SABON_GARI", - "AFRO:NIGERIA:KADUNA:SANGA", - "AFRO:NIGERIA:KADUNA:SOBA", - "AFRO:NIGERIA:KADUNA:ZANGON_KATAF", - "AFRO:NIGERIA:KADUNA:ZARIA", - "AFRO:NIGERIA:KANO:AJINGI", - "AFRO:NIGERIA:KANO:ALBASU", - "AFRO:NIGERIA:KANO:BAGWAI", - "AFRO:NIGERIA:KANO:BEBEJI", - "AFRO:NIGERIA:KANO:BICHI", - "AFRO:NIGERIA:KANO:BUNKURE", - "AFRO:NIGERIA:KANO:DALA", - "AFRO:NIGERIA:KANO:DAMBATTA", - "AFRO:NIGERIA:KANO:DAWAKIN_KUDU", - "AFRO:NIGERIA:KANO:DAWAKIN_TOFA", - "AFRO:NIGERIA:KANO:DOGUWA", - "AFRO:NIGERIA:KANO:FAGGE", - "AFRO:NIGERIA:KANO:GABASAWA", - "AFRO:NIGERIA:KANO:GARKO", - "AFRO:NIGERIA:KANO:GARUM_MALLAM", - "AFRO:NIGERIA:KANO:GAYA", - "AFRO:NIGERIA:KANO:GEZAWA", - "AFRO:NIGERIA:KANO:GWALE", - "AFRO:NIGERIA:KANO:GWARZO", - "AFRO:NIGERIA:KANO:KABO", - "AFRO:NIGERIA:KANO:KANO_MUNICIPAL", - "AFRO:NIGERIA:KANO:KARAYE", - "AFRO:NIGERIA:KANO:KIBIYA", - "AFRO:NIGERIA:KANO:KIRU", - "AFRO:NIGERIA:KANO:KUMBOTSO", - "AFRO:NIGERIA:KANO:KUNCHI", - "AFRO:NIGERIA:KANO:KURA", - "AFRO:NIGERIA:KANO:MADOBI", - "AFRO:NIGERIA:KANO:MAKODA", - "AFRO:NIGERIA:KANO:MINJIBIR", - "AFRO:NIGERIA:KANO:NASARAWA", - "AFRO:NIGERIA:KANO:RANO", - "AFRO:NIGERIA:KANO:RIMIN_GADO", - "AFRO:NIGERIA:KANO:ROGO", - "AFRO:NIGERIA:KANO:SHANONO", - "AFRO:NIGERIA:KANO:SUMAILA", - "AFRO:NIGERIA:KANO:TAKAI", - "AFRO:NIGERIA:KANO:TARAUNI", - "AFRO:NIGERIA:KANO:TOFA", - "AFRO:NIGERIA:KANO:TSANYAWA", - "AFRO:NIGERIA:KANO:TUDUN_WADA", - "AFRO:NIGERIA:KANO:UNGOGO", - "AFRO:NIGERIA:KANO:WARAWA", - "AFRO:NIGERIA:KANO:WUDIL", - "AFRO:NIGERIA:KATSINA:BAKORI", - "AFRO:NIGERIA:KATSINA:BATAGARAWA", - "AFRO:NIGERIA:KATSINA:BATSARI", - "AFRO:NIGERIA:KATSINA:BAURE", - "AFRO:NIGERIA:KATSINA:BINDAWA", - "AFRO:NIGERIA:KATSINA:CHARANCHI", - "AFRO:NIGERIA:KATSINA:DANDUME", - "AFRO:NIGERIA:KATSINA:DANJA", - "AFRO:NIGERIA:KATSINA:DAN_MUSA", - "AFRO:NIGERIA:KATSINA:DAURA", - "AFRO:NIGERIA:KATSINA:DUTSI", - "AFRO:NIGERIA:KATSINA:DUTSIN_MA", - "AFRO:NIGERIA:KATSINA:FASKARI", - "AFRO:NIGERIA:KATSINA:FUNTUA", - "AFRO:NIGERIA:KATSINA:INGAWA", - "AFRO:NIGERIA:KATSINA:JIBIA", - "AFRO:NIGERIA:KATSINA:KAFUR", - "AFRO:NIGERIA:KATSINA:KAITA", - "AFRO:NIGERIA:KATSINA:KANKARA", - "AFRO:NIGERIA:KATSINA:KANKIA", - "AFRO:NIGERIA:KATSINA:KATSINA", - "AFRO:NIGERIA:KATSINA:KURFI", - "AFRO:NIGERIA:KATSINA:KUSADA", - "AFRO:NIGERIA:KATSINA:MAIADUA", - "AFRO:NIGERIA:KATSINA:MALUMFASHI", - "AFRO:NIGERIA:KATSINA:MANI", - "AFRO:NIGERIA:KATSINA:MASHI", - "AFRO:NIGERIA:KATSINA:MATAZU", - "AFRO:NIGERIA:KATSINA:MUSAWA", - "AFRO:NIGERIA:KATSINA:RIMI", - "AFRO:NIGERIA:KATSINA:SABUWA", - "AFRO:NIGERIA:KATSINA:SAFANA", - "AFRO:NIGERIA:KATSINA:SANDAMU", - "AFRO:NIGERIA:KATSINA:ZANGO", - "AFRO:NIGERIA:KEBBI:ALEIRO", - "AFRO:NIGERIA:KEBBI:AREWA_DANDI", - "AFRO:NIGERIA:KEBBI:ARGUNGU", - "AFRO:NIGERIA:KEBBI:AUGIE", - "AFRO:NIGERIA:KEBBI:BAGUDO", - "AFRO:NIGERIA:KEBBI:BIRNIN_KEBBI", - "AFRO:NIGERIA:KEBBI:BUNZA", - "AFRO:NIGERIA:KEBBI:DANDI", - "AFRO:NIGERIA:KEBBI:FAKAI", - "AFRO:NIGERIA:KEBBI:GWANDU", - "AFRO:NIGERIA:KEBBI:JEGA", - "AFRO:NIGERIA:KEBBI:KALGO", - "AFRO:NIGERIA:KEBBI:KOKO_BESSE", - "AFRO:NIGERIA:KEBBI:MAIYAMA", - "AFRO:NIGERIA:KEBBI:NGASKI", - "AFRO:NIGERIA:KEBBI:SAKABA", - "AFRO:NIGERIA:KEBBI:SHANGA", - "AFRO:NIGERIA:KEBBI:SURU", - "AFRO:NIGERIA:KEBBI:WASAGU_DANKO", - "AFRO:NIGERIA:KEBBI:YAURI", - "AFRO:NIGERIA:KEBBI:ZURU", - "AFRO:NIGERIA:KOGI:ADAVI", - "AFRO:NIGERIA:KOGI:AJAOKUTA", - "AFRO:NIGERIA:KOGI:ANKPA", - "AFRO:NIGERIA:KOGI:BASSA", - "AFRO:NIGERIA:KOGI:DEKINA", - "AFRO:NIGERIA:KOGI:IBAJI", - "AFRO:NIGERIA:KOGI:IDAH", - "AFRO:NIGERIA:KOGI:IGALAMELA_ODOLU", - "AFRO:NIGERIA:KOGI:IJUMU", - "AFRO:NIGERIA:KOGI:KABBA_BUNU", - "AFRO:NIGERIA:KOGI:KOGI", - "AFRO:NIGERIA:KOGI:LOKOJA", - "AFRO:NIGERIA:KOGI:MOPA_MURO", - "AFRO:NIGERIA:KOGI:OFU", - "AFRO:NIGERIA:KOGI:OGORI_MAGONGO", - "AFRO:NIGERIA:KOGI:OKEHI", - "AFRO:NIGERIA:KOGI:OKENE", - "AFRO:NIGERIA:KOGI:OLAMABOLO", - "AFRO:NIGERIA:KOGI:OMALA", - "AFRO:NIGERIA:KOGI:YAGBA_EAST", - "AFRO:NIGERIA:KOGI:YAGBA_WEST", - "AFRO:NIGERIA:KWARA:ASA", - "AFRO:NIGERIA:KWARA:BARUTEN", - "AFRO:NIGERIA:KWARA:EDU", - "AFRO:NIGERIA:KWARA:EKITI", - "AFRO:NIGERIA:KWARA:IFELODUN", - "AFRO:NIGERIA:KWARA:ILORIN_EAST", - "AFRO:NIGERIA:KWARA:ILORIN_SOUTH", - "AFRO:NIGERIA:KWARA:ILORIN_WEST", - "AFRO:NIGERIA:KWARA:IREPODUN", - "AFRO:NIGERIA:KWARA:ISIN", - "AFRO:NIGERIA:KWARA:KAIAMA", - "AFRO:NIGERIA:KWARA:MORO", - "AFRO:NIGERIA:KWARA:OFFA", - "AFRO:NIGERIA:KWARA:OKE_ERO", - "AFRO:NIGERIA:KWARA:OYUN", - "AFRO:NIGERIA:KWARA:PATEGI", - "AFRO:NIGERIA:LAGOS:AGEGE", - "AFRO:NIGERIA:LAGOS:AJEROMI_IFELODUN", - "AFRO:NIGERIA:LAGOS:ALIMOSHO", - "AFRO:NIGERIA:LAGOS:AMUWO_ODOFIN", - "AFRO:NIGERIA:LAGOS:APAPA", - "AFRO:NIGERIA:LAGOS:BADAGRY", - "AFRO:NIGERIA:LAGOS:EPE", - "AFRO:NIGERIA:LAGOS:ETI_OSA", - "AFRO:NIGERIA:LAGOS:IBEJU_LEKKI", - "AFRO:NIGERIA:LAGOS:IFAKO_IJAYE", - "AFRO:NIGERIA:LAGOS:IKEJA", - "AFRO:NIGERIA:LAGOS:IKORODU", - 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"AFRO:NIGERIA:PLATEAU:JOS_NORTH", - "AFRO:NIGERIA:PLATEAU:JOS_SOUTH", - "AFRO:NIGERIA:PLATEAU:KANAM", - "AFRO:NIGERIA:PLATEAU:KANKE", - "AFRO:NIGERIA:PLATEAU:LANGTANG_NORTH", - "AFRO:NIGERIA:PLATEAU:LANGTANG_SOUTH", - "AFRO:NIGERIA:PLATEAU:MANGU", - "AFRO:NIGERIA:PLATEAU:MIKANG", - "AFRO:NIGERIA:PLATEAU:PANKSHIN", - "AFRO:NIGERIA:PLATEAU:QUAAN_PAN", - "AFRO:NIGERIA:PLATEAU:RIYOM", - "AFRO:NIGERIA:PLATEAU:SHENDAM", - "AFRO:NIGERIA:PLATEAU:WASE", - "AFRO:NIGERIA:RIVERS:ABUA_ODUAL", - "AFRO:NIGERIA:RIVERS:AHOADA_EAST", - "AFRO:NIGERIA:RIVERS:AHOADA_WEST", - "AFRO:NIGERIA:RIVERS:AKUKU_TORU", - "AFRO:NIGERIA:RIVERS:ANDONI", - "AFRO:NIGERIA:RIVERS:ASARI_TORU", - "AFRO:NIGERIA:RIVERS:BONNY", - "AFRO:NIGERIA:RIVERS:DEGEMA", - "AFRO:NIGERIA:RIVERS:ELEME", - "AFRO:NIGERIA:RIVERS:EMOHUA", - "AFRO:NIGERIA:RIVERS:ETCHE", - "AFRO:NIGERIA:RIVERS:GOKANA", - "AFRO:NIGERIA:RIVERS:IKWERRE", - "AFRO:NIGERIA:RIVERS:KHANA", - "AFRO:NIGERIA:RIVERS:OBIO_AKPOR", - "AFRO:NIGERIA:RIVERS:OGBA_EGBEMA_NDONI", - "AFRO:NIGERIA:RIVERS:OGU_BOLO", - "AFRO:NIGERIA:RIVERS:OKRIKA", - "AFRO:NIGERIA:RIVERS:OMUMMA", - "AFRO:NIGERIA:RIVERS:OPOBO_NKORO", - "AFRO:NIGERIA:RIVERS:OYIGBO", - "AFRO:NIGERIA:RIVERS:PORT_HARCOURT", - "AFRO:NIGERIA:RIVERS:TAI", - "AFRO:NIGERIA:SOKOTO:BINJI", - "AFRO:NIGERIA:SOKOTO:BODINGA", - "AFRO:NIGERIA:SOKOTO:DANGE_SHUNI", - "AFRO:NIGERIA:SOKOTO:GADA", - "AFRO:NIGERIA:SOKOTO:GORONYO", - "AFRO:NIGERIA:SOKOTO:GUDU", - "AFRO:NIGERIA:SOKOTO:GWADABAWA", - "AFRO:NIGERIA:SOKOTO:ILLELA", - "AFRO:NIGERIA:SOKOTO:ISA", - "AFRO:NIGERIA:SOKOTO:KEBBE", - "AFRO:NIGERIA:SOKOTO:KWARE", - "AFRO:NIGERIA:SOKOTO:RABAH", - "AFRO:NIGERIA:SOKOTO:SABON_BIRNI", - "AFRO:NIGERIA:SOKOTO:SHAGARI", - "AFRO:NIGERIA:SOKOTO:SILAME", - "AFRO:NIGERIA:SOKOTO:SOKOTO_NORTH", - "AFRO:NIGERIA:SOKOTO:SOKOTO_SOUTH", - "AFRO:NIGERIA:SOKOTO:TAMBUWAL", - "AFRO:NIGERIA:SOKOTO:TANGAZA", - "AFRO:NIGERIA:SOKOTO:TURETA", - "AFRO:NIGERIA:SOKOTO:WAMAKKO", - "AFRO:NIGERIA:SOKOTO:WURNO", - "AFRO:NIGERIA:SOKOTO:YABO", - 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"AFRO:NIGERIA:YOBE:YUSUFARI", - "AFRO:NIGERIA:ZAMFARA:ANKA", - "AFRO:NIGERIA:ZAMFARA:BAKURA", - "AFRO:NIGERIA:ZAMFARA:BIRNIN_MAGAJI_KIYAW", - "AFRO:NIGERIA:ZAMFARA:BUKKUYUM", - "AFRO:NIGERIA:ZAMFARA:BUNGUDU", - "AFRO:NIGERIA:ZAMFARA:GUMMI", - "AFRO:NIGERIA:ZAMFARA:GUSAU", - "AFRO:NIGERIA:ZAMFARA:KAURA_NAMODA", - "AFRO:NIGERIA:ZAMFARA:MARADUN", - "AFRO:NIGERIA:ZAMFARA:MARU", - "AFRO:NIGERIA:ZAMFARA:SHINKAFI", - "AFRO:NIGERIA:ZAMFARA:TALATA_MAFARA", - "AFRO:NIGERIA:ZAMFARA:TSAFE", - "AFRO:NIGERIA:ZAMFARA:ZURMI" - ], - "timevec": [ - 36682.5, - 37047.5, - 37412.5, - 37777.5, - 38142.5, - 38507.5, - 38872.5, - 39237.5, - 39602.5, - 39967.5, - 40332.5, - 40697.5, - 41062.5, - 41427.5, - 41792.5, - 42157.5, - 42522.5, - 42887.5, - 43252.5, - 43617.5 - ] -} \ No newline at end of file diff --git a/model_measles_nga02/Assets/data/NGA_MCV_SIA.json b/model_measles_nga02/Assets/data/NGA_MCV_SIA.json deleted file mode 100644 index 9f39823b..00000000 --- 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"date": 44865, - "nodes": [ - "AFRO:NIGERIA:EKITI" - ], - "targ_frac": 1.0 - }, - "NGA_2022_56": { - "age_max": 1825, - "age_min": 273, - "date": 44867, - "nodes": [ - "AFRO:NIGERIA:ADAMAWA" - ], - "targ_frac": 1.0 - }, - "NGA_2022_57": { - "age_max": 1825, - "age_min": 273, - "date": 44868, - "nodes": [ - "AFRO:NIGERIA:RIVERS", - "AFRO:NIGERIA:AKWA_IBOM", - "AFRO:NIGERIA:NIGER" - ], - "targ_frac": 1.0 - }, - "NGA_2022_58": { - "age_max": 1825, - "age_min": 273, - "date": 44869, - "nodes": [ - "AFRO:NIGERIA:ZAMFARA" - ], - "targ_frac": 1.0 - }, - "NGA_2022_59": { - "age_max": 1825, - "age_min": 273, - "date": 44872, - "nodes": [ - "AFRO:NIGERIA:EDO" - ], - "targ_frac": 1.0 - }, - "NGA_2022_60": { - "age_max": 1825, - "age_min": 273, - "date": 44874, - "nodes": [ - "AFRO:NIGERIA:DELTA" - ], - "targ_frac": 1.0 - }, - "NGA_2022_61": { - "age_max": 1825, - "age_min": 273, - "date": 44875, - "nodes": [ - "AFRO:NIGERIA:JIGAWA" - ], - "targ_frac": 1.0 - } -} \ No newline at end of file diff --git a/model_measles_nga02/Assets/data/pop_dat_NGA.csv b/model_measles_nga02/Assets/data/pop_dat_NGA.csv deleted file mode 100644 index 4440eb73..00000000 --- a/model_measles_nga02/Assets/data/pop_dat_NGA.csv +++ /dev/null @@ -1,22 +0,0 @@ -1950,1955,1960,1965,1970,1975,1980,1985,1990,1995,2000,2005,2010,2015,2020,2025,2030,2035,2040,2045,2050,2055,2060,2065,2070,2075,2080,2085,2090,2095,2100 -6329574,6754053,7584631,8567994,9641499,11327345,13367015,15214373,16798895,18583369,21074261,24314339,27695441,31132119,33938795,36781438,39848916,42941310,45828915,48332476,50365386,52314888,53849167,55282471,56436765,57362801,58003145,58220077,58229029,58136720,57888417 -5081931,5497675,5938430,6762933,7702797,8754784,10446395,12311934,14056668,15512740,17209341,19689545,23008415,26416349,29913646,32760002,35637698,38735665,41863440,44793347,47348522,49437508,51442840,53034226,54522596,55729953,56707520,57395873,57660952,57714939,57665294 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-336595,343574,379510,437145,494560,531312,613782,711065,829626,939880,1037667,1136306,1299838,1507324,1716912,1931618,2282818,2689807,3177668,3921606,4800722,5675770,6484080,7466318,8909765,10844968,12935065,15164100,17145533,19210396,21460455 -167650,158606,168796,194894,231694,270825,300707,355335,411262,479304,535148,580658,654830,764595,906791,1045002,1193528,1430823,1710216,2049047,2562116,3175203,3797860,4386814,5106568,6159657,7576983,9131487,10817469,12358278,13990442 -62031,51831,52186,59271,71637,89242,109283,125268,147838,170867,195037,212454,240204,277755,333348,401100,472133,550632,673997,822532,1005313,1280933,1616569,1967730,2312969,2739734,3361969,4206299,5157029,6214234,7221100 -10905,10905,9886,10843,13073,16798,22229,28347,32454,38232,43003,47516,54511,63295,75438,92067,113992,138055,165810,208941,262337,329588,431356,558879,698469,843045,1025119,1291073,1658423,2087291,2581641 -965,964,1065,1069,1262,1638,2262,3136,3995,4566,5204,5625,6682,7820,9171,11100,14045,18032,22673,28313,37046,48277,62938,85442,114877,149009,186647,235493,307928,410573,536223 -55,55,58,70,75,93,130,186,258,327,365,400,419,498,639,752,939,1228,1634,2131,2767,3760,5097,6915,9774,13695,18512,24184,31859,43495,60522 -1,1,1,2,3,3,3,4,7,9,12,12,9,9,30,41,49,62,82,111,147,195,270,376,523,758,1090,1519,2051,2788,3921 diff --git a/model_measles_nga02/Assets/python/aux_demo_calc.py b/model_measles_nga02/Assets/python/aux_demo_calc.py deleted file mode 100644 index 5c8b1f22..00000000 --- a/model_measles_nga02/Assets/python/aux_demo_calc.py +++ /dev/null @@ -1,77 +0,0 @@ -#******************************************************************************** -# -# Steady-state age distribution calculator (a.k.a. magic) -# -#******************************************************************************** - -import os, sys - -import numpy as np -import scipy.sparse as sp -import scipy.sparse.linalg as la -import scipy.optimize as opt - -#******************************************************************************** - -def demoCalc_AgeDist(bval, mvecX_in, mvecY): - - # Control parameters - max_yr = 120 - bin_size = 30 - day_to_year = 365 - - # Age brackets - avecY = np.arange(0,max_yr*day_to_year,bin_size)-1 - - # Mortality sampling - mvecX = [-1] + mvecX_in + [max_yr*day_to_year+1] - mvecY = [mvecY[0]] + mvecY + [mvecY[-1]] - mX = np.arange(0,max_yr*day_to_year,bin_size) - mX[0] = 1 - mval = 1.0 - np.interp(mX,xp=mvecX,fp=mvecY) - r_n = mval.size - - # Matrix construction - BmatRC = (np.zeros(r_n), np.arange(r_n)) - Bmat = sp.csr_matrix(([bval*bin_size]*r_n, BmatRC), shape=(r_n,r_n)) - Mmat = sp.spdiags(mval[:-1]**bin_size, -1, r_n, r_n) - Dmat = Bmat+Mmat - - # Math - (gR,popVec) = la.eigs(Dmat,k=1,sigma=1.0) - gR = np.abs(gR**(float(day_to_year)/float(bin_size))) - popVec = np.abs(popVec)/np.sum(np.abs(popVec)) - - # Apply seasonal forcing - mVecR = [ -2.0, 30.5, 30.6, 60.5, 60.6, 91.5, 91.6,121.5, - 121.6,152.5,152.6,183.5,183.6,213.5,213.6,244.5, - 245.6,274.5,274.6,305.5,305.6,333.5,335.6,364.5] - fVec=(12*[1.0]) # No seasonal forcing - fVec = np.flipud([val for val in fVec for _ in (0,1)]) - wfVec = np.array([np.mean(np.interp(np.mod(range(val+1,val+31),365), - xp=mVecR,fp=fVec)) for val in avecY]).reshape(-1,1) - popVec = popVec*wfVec/np.sum(popVec*wfVec) - - # Age sampling - avecY[0] = 0 - avecX = np.clip(np.around(np.cumsum(popVec),decimals=7),0.0, 1.0) - avecX = np.insert(avecX,0,np.zeros(1)) - - return ((gR.tolist())[0],(avecX[:-1]).tolist(),(avecY).tolist()) - -#******************************************************************************** - -# Calculated haversine distance -def demoCalc_hDist(lat1, long1, lat2, long2): - - lat1 = np.pi*lat1 /180.0 - lat2 = np.pi*lat2 /180.0 - long1 = np.pi*long1/180.0 - long2 = np.pi*long2/180.0 - - delt = 6371*2*np.arcsin(np.sqrt(np.sin(0.5*lat2-0.5*lat1)**2 + - np.cos(lat2)*np.cos(lat1)*np.sin(0.5*long2-0.5*long1)**2)) - - return delt - -#******************************************************************************* \ No newline at end of file diff --git a/model_measles_nga02/Assets/python/builder_campaign.py b/model_measles_nga02/Assets/python/builder_campaign.py deleted file mode 100644 index 05f910a7..00000000 --- a/model_measles_nga02/Assets/python/builder_campaign.py +++ /dev/null @@ -1,343 +0,0 @@ -#******************************************************************************** -# -# Builds a campaign for input to the DTK. -# -#******************************************************************************** - -import os, sys, json - -import global_data as gdata - -import numpy as np - -import numpy as np - -import emod_api.campaign as camp_module - -from emod_api import schema_to_class as s2c -from emod_api.interventions import utils - -#******************************************************************************** - -def campaignBuilder(): - - # Note: campaign module itself is the file object; no Campaign class right now - CAMP_FILENAME = 'campaign.json' - - ALL_NODES = gdata.demog_object.node_ids - BASE_YEAR = gdata.base_year - START_YEAR = gdata.start_year - BR_MULT_X = gdata.brate_mult_x - BR_MULT_Y = gdata.brate_mult_y - - - # ***** Get variables for this simulation ***** - SIA_ADDLIST = gdata.var_params['test_sias'] - - CHANGE_RI = 0.0 - if('change_RI' in gdata.var_params): - CHANGE_RI = gdata.var_params['change_RI'] - - - # ***** Events ***** - - node_dict = gdata.demog_node - node_opts = list(node_dict.keys()) - - - # Add time varying birth rate - start_day = 365.0*(START_YEAR-BASE_YEAR) - pdict = {'startday': start_day , - 'nodes': ALL_NODES , - 'x_vals': BR_MULT_X , - 'y_vals': BR_MULT_Y } - - camp_module.add(IV_BR_FORCE(pdict)) - - - # Add MCV1 RI - start_day = 365.0*(START_YEAR-BASE_YEAR) - mcv1_dat = np.loadtxt(os.path.join('Assets','data', 'NGA_MCV1.csv'), delimiter=',') - with open(os.path.join('Assets','data', 'NGA_MCV1.json')) as fid01: - mcv1_dict = json.load(fid01) - - time_vec = np.array(mcv1_dict['timevec']) - start_day - for k1 in range(len(mcv1_dict['namevec'])): - reg_name = mcv1_dict['namevec'][k1] - mcv1_vec = mcv1_dat[k1,:] - node_list = list() - - for node_name in node_opts: - if((node_name == reg_name) or (node_name.startswith(reg_name+':'))): - node_list.append(node_dict[node_name]) - - if(not node_list): - continue - - if(np.amin(time_vec) <= 0.0): - init_mcv1 = np.interp(0.0, time_vec, mcv1_vec) - else: - init_mcv1 = np.mean(mcv1_vec[:3]) - - time_list = [0.0] + (time_vec[time_vec>0.0]).tolist() - time_list.append(time_list[-1] + 365.0) - mcv1_list = [init_mcv1] + (mcv1_vec[time_vec>0.0]).tolist() + [np.mean(mcv1_vec[-3:])] - - for k2 in range(1,100): - new_time = time_list[-1] + 365.0 - new_rate = max((1.0 - (1.0-mcv1_list[-1]) * (1.0-CHANGE_RI)),0.0) - time_list.append(new_time) - mcv1_list.append(new_rate) - - pdict = {'startday': start_day , - 'nodes': node_list , - 'x_vals': time_list , - 'y_vals': mcv1_list } - - camp_module.add(IV_MCV1(pdict)) - - - # Add MCV SIAs - with open(os.path.join('Assets','data','NGA_MCV_SIA.json')) as fid01: - dict_sia = json.load(fid01) - - for sia_name in dict_sia: - sia_obj = dict_sia[sia_name] - start_val = sia_obj['date'] - if(start_val < start_day): - continue - - SIA_COVER = 0.50 - age_min = sia_obj['age_min'] - age_max = sia_obj['age_max'] - targ_frac = sia_obj['targ_frac'] - node_list = list() - for targ_val in sia_obj['nodes']: - for node_name in node_opts: - if((node_name == targ_val) or (node_name.startswith(targ_val+':'))): - node_list.append(node_dict[node_name]) - - if(not node_list): - continue - - pdict = {'startday': start_val , - 'nodes': node_list , - 'agemin': age_min , - 'agemax': age_max , - 'coverage': SIA_COVER*targ_frac } - - camp_module.add(IV_SIA(pdict)) - - - # Add infectivity seasonality - all_nodes = [node_dict[val] for val in node_opts] - pdict = {'startday': start_day , - 'nodes': all_nodes , - 'peak_size': 1.3 , - 'peak_wide': 45.0 , - 'peak_time': 65.0 } - - camp_module.add(IV_BumpR0(pdict)) - - - # Use custom spec for intervention schedule - for year_val in SIA_ADDLIST: - start_val = (year_val-BASE_YEAR)*365.0 - - # Create and add intervention - pdict = {'startday': start_val , - 'nodes': all_nodes } - camp_module.add(IV_SIA_ALT(pdict)) - - - - # ***** End file construction ***** - camp_module.save(filename=CAMP_FILENAME) - - # Save filename to global data for use in other functions - gdata.camp_file = CAMP_FILENAME - - - return None - -#******************************************************************************** - -# Birth rate time dependency -def IV_BR_FORCE(params=dict()): - - SCHEMA_PATH = gdata.schema_path - - camp_event = s2c.get_class_with_defaults('CampaignEvent', SCHEMA_PATH) - camp_coord = s2c.get_class_with_defaults('StandardEventCoordinator', SCHEMA_PATH) - camp_iv = s2c.get_class_with_defaults('NodeBirthRateMult', SCHEMA_PATH) - - node_set = utils.do_nodes(SCHEMA_PATH, params['nodes']) - - camp_event.Event_Coordinator_Config = camp_coord - camp_event.Start_Day = params['startday'] - camp_event.Nodeset_Config = node_set - - camp_coord.Intervention_Config = camp_iv - - camp_iv.Multiplier_By_Duration.Times = params['x_vals'] - camp_iv.Multiplier_By_Duration.Values = params['y_vals'] - - return camp_event - -#******************************************************************************** - -# Routine immunization for MCV1 -def IV_MCV1(params=dict()): - - SCHEMA_PATH = gdata.schema_path - - camp_event = s2c.get_class_with_defaults('CampaignEvent', SCHEMA_PATH) - camp_coord = s2c.get_class_with_defaults('StandardEventCoordinator', SCHEMA_PATH) - camp_iv01 = s2c.get_class_with_defaults('NodeLevelHealthTriggeredIVScaleUpSwitch', SCHEMA_PATH) - camp_iv02 = s2c.get_class_with_defaults('DelayedIntervention', SCHEMA_PATH) - camp_iv03 = s2c.get_class_with_defaults('Vaccine', SCHEMA_PATH) - camp_wane = s2c.get_class_with_defaults('WaningEffectConstant', SCHEMA_PATH) - - node_set = utils.do_nodes(SCHEMA_PATH, params['nodes']) - - camp_event.Event_Coordinator_Config = camp_coord - camp_event.Start_Day = params['startday'] - camp_event.Nodeset_Config = node_set - - camp_coord.Intervention_Config = camp_iv01 - - camp_iv01.Actual_IndividualIntervention_Config = camp_iv02 - camp_iv01.Demographic_Coverage = 1.0 # Required, not used - camp_iv01.Trigger_Condition_List = ['Births'] - camp_iv01.Demographic_Coverage_Time_Profile = 'InterpolationMap' - camp_iv01.Coverage_vs_Time_Interpolation_Map.Times = params['x_vals'] - camp_iv01.Coverage_vs_Time_Interpolation_Map.Values = params['y_vals'] - camp_iv01.Not_Covered_IndividualIntervention_Configs = [] # Breaks if not present - - camp_iv02.Actual_IndividualIntervention_Configs = [camp_iv03] - camp_iv02.Event_Trigger_Distributed = "GP_EVENT_000" - camp_iv02.Delay_Period_Distribution = "GAUSSIAN_DISTRIBUTION" - camp_iv02.Delay_Period_Gaussian_Mean = 300.0 - camp_iv02.Delay_Period_Gaussian_Std_Dev = 90.0 - - camp_iv03.Acquire_Config = camp_wane - camp_iv03.Cost_To_Consumer = 0.0 - - camp_wane.Initial_Effect = 1.0 - - return camp_event - -#******************************************************************************** - -# SIAs for MCV -def IV_SIA(params=dict()): - - SCHEMA_PATH = gdata.schema_path - - camp_event = s2c.get_class_with_defaults('CampaignEvent', SCHEMA_PATH) - camp_coord = s2c.get_class_with_defaults('StandardEventCoordinator', SCHEMA_PATH) - camp_iv01 = s2c.get_class_with_defaults('Vaccine', SCHEMA_PATH) - camp_wane = s2c.get_class_with_defaults('WaningEffectConstant', SCHEMA_PATH) - - node_set = utils.do_nodes(SCHEMA_PATH, params['nodes']) - - camp_event.Event_Coordinator_Config = camp_coord - camp_event.Start_Day = params['startday'] - camp_event.Nodeset_Config = node_set - - camp_coord.Intervention_Config = camp_iv01 - camp_coord.Target_Demographic = 'ExplicitAgeRanges' - camp_coord.Demographic_Coverage = params['coverage'] - camp_coord.Target_Age_Min = params['agemin']/365.0 - camp_coord.Target_Age_Max = params['agemax']/365.0 - - camp_iv01.Acquire_Config = camp_wane - camp_iv01.Cost_To_Consumer = 0.0 - - camp_wane.Initial_Effect = 1.0 - - return camp_event - -#******************************************************************************** - -# Seasonal infectivity forcing; boxcar -def IV_BumpR0(params=dict()): - - SCHEMA_PATH = gdata.schema_path - - camp_event = s2c.get_class_with_defaults('CampaignEvent', SCHEMA_PATH) - camp_coord = s2c.get_class_with_defaults('StandardEventCoordinator', SCHEMA_PATH) - camp_iv01 = s2c.get_class_with_defaults('NodeInfectivityMult', SCHEMA_PATH) - - node_set = utils.do_nodes(SCHEMA_PATH, params['nodes']) - - camp_event.Event_Coordinator_Config = camp_coord - camp_event.Start_Day = params['startday'] - camp_event.Nodeset_Config = node_set - - camp_coord.Intervention_Config = camp_iv01 - camp_coord.Number_Repetitions = -1 # Repeat forever - camp_coord.Timesteps_Between_Repetitions = 365.0 - - init_off = params['startday'] %365.0 - peak_wid = params['peak_wide'] - x_peak = (params['peak_time']-init_off)%365.0 - y_peak = params['peak_size'] - x_init = (x_peak -peak_wid)%365.0 - x_ends = (x_peak +peak_wid)%365.0 - - if(peak_wid > x_peak): - dx_val = x_peak - elif(peak_wid > 365.0-x_peak): - dx_val = 365.0-x_peak - else: - dx_val = peak_wid - - #y_bound = y_peak - (y_peak-1)/peak_wid * dx_val - y_bound = y_peak - (y_peak-1)*(dx_val>=peak_wid) - - xyvals = set([( 0.0, y_bound), - (x_init, 1.0), - (x_init+0.1, y_peak), - (x_peak, y_peak), - (x_ends-0.1, y_peak), - (x_ends, 1.0), - ( 365.0, y_bound)]) - xyvals = sorted(list(xyvals), key=lambda val: val[0]) - - camp_iv01.Multiplier_By_Duration.Times = [val[0] for val in xyvals] - camp_iv01.Multiplier_By_Duration.Values = [val[1] for val in xyvals] - - return camp_event - -#******************************************************************************** - -# Distribute vaccines using OutbreakIndividual infections -def IV_SIA_ALT(params=dict()): - - SCHEMA_PATH = gdata.schema_path - - camp_event = s2c.get_class_with_defaults('CampaignEvent', SCHEMA_PATH) - camp_coord = s2c.get_class_with_defaults('StandardEventCoordinator', SCHEMA_PATH) - camp_iv = s2c.get_class_with_defaults('OutbreakIndividual', SCHEMA_PATH) - - node_set = utils.do_nodes(SCHEMA_PATH, params['nodes']) - - camp_event.Event_Coordinator_Config = camp_coord - camp_event.Start_Day = params['startday'] - camp_event.Nodeset_Config = node_set - - camp_coord.Intervention_Config = camp_iv - camp_coord.Demographic_Coverage = 0.75 - camp_coord.Target_Demographic = 'ExplicitAgeRanges' - camp_coord.Target_Age_Min = 0.75 - camp_coord.Target_Age_Max = 5.00 - - camp_iv.Clade = 0 - camp_iv.Genome = 1 - camp_iv.Ignore_Immunity = 0 - camp_iv.Cost_To_Consumer = 1.0 - - return camp_event - -#******************************************************************************** \ No newline at end of file diff --git a/model_measles_nga02/Assets/python/builder_config.py b/model_measles_nga02/Assets/python/builder_config.py deleted file mode 100644 index 2f24e03c..00000000 --- a/model_measles_nga02/Assets/python/builder_config.py +++ /dev/null @@ -1,194 +0,0 @@ -#******************************************************************************** -# -# Builds a config file for input to the DTK. -# -#******************************************************************************** - -import os, sys, json - -import global_data as gdata - -import numpy as np - -from emod_api.config import default_from_schema_no_validation as dfs - -#******************************************************************************** - -def max_coeff_ref(exp_vals): - - if(np.min(exp_vals)<0.0 or np.max(exp_vals)>8.0): - raise Exception('Network exponent out of range.') - - x_ref = np.array([ 0.0, 0.25, 0.50, 0.75, - 1.0, 2.0, 3.0, 4.0, - 5.0, 6.0, 7.0, 8.0 ]) - y_ref = np.array([-2.794, -1.298, 0.155, 1.528, - 2.797, 6.924, 9.774, 12.22, - 14.44, 16.56, 18.65, 20.75]) - - max_coeffs = np.interp(exp_vals, x_ref, y_ref).tolist() - - return max_coeffs - -#******************************************************************************** - -# Function for setting config parameters -def update_config_obj(config): - - MAX_CLOCK = gdata.max_clock - INIT_POP = gdata.init_pop - BASE_YEAR = gdata.base_year - START_YEAR = gdata.start_year - - # ***** Get variables for this simulation ***** - R0 = gdata.var_params['R0'] - - RUN_NUM = gdata.var_params['run_number'] - TIME_YEARS = gdata.var_params['num_years'] - INIT_AGENT = gdata.var_params['num_agents'] - - - # ***** Random number seed ***** - config.parameters.Run_Number = RUN_NUM - - - # ***** Time ***** - config.parameters.Start_Time = 365.0*(START_YEAR-BASE_YEAR) - config.parameters.Simulation_Duration = 365.0*TIME_YEARS - - config.parameters.Enable_Termination_On_Total_Wall_Time = 1 - config.parameters.Wall_Time_Maximum_In_Minutes = MAX_CLOCK - - - # ***** Intrahost ***** - config.parameters.Base_Infectivity_Distribution = 'GAMMA_DISTRIBUTION' - config.parameters.Base_Infectivity_Scale = R0/8.0 - config.parameters.Base_Infectivity_Shape = 1.0 - - config.parameters.Incubation_Period_Distribution = 'GAMMA_DISTRIBUTION' - config.parameters.Incubation_Period_Scale = 1.0 - config.parameters.Incubation_Period_Shape = 3.5 - - config.parameters.Infectious_Period_Distribution = 'GAUSSIAN_DISTRIBUTION' - config.parameters.Infectious_Period_Gaussian_Mean = 18.0 - config.parameters.Infectious_Period_Gaussian_Std_Dev = 2.0 - - config.parameters.Enable_Nonuniform_Shedding = 1.0 - config.parameters.Shedding_Distribution_Alpha = 10.0 - config.parameters.Shedding_Distribution_Beta = 10.0 - - config.parameters.Symptomatic_Infectious_Offset = 11.0 - - config.parameters.Enable_Disease_Mortality = 0 - - - # ***** Immunity ***** - config.parameters.Enable_Immunity = 1 - config.parameters.Enable_Immune_Decay = 0 - - config.parameters.Post_Infection_Acquisition_Multiplier = 0.0 - config.parameters.Post_Infection_Transmission_Multiplier = 0.0 - config.parameters.Post_Infection_Mortality_Multiplier = 0.0 - - config.parameters.Enable_Maternal_Protection = 1 - config.parameters.Susceptibility_Type = 'BINARY' - config.parameters.Maternal_Protection_Type = 'SIGMOID' - config.parameters.Maternal_Sigmoid_SteepFac = 50.0 - config.parameters.Maternal_Sigmoid_HalfMaxAge = 150.0 - config.parameters.Maternal_Sigmoid_SusInit = 0.0 - - config.parameters.Enable_Initial_Susceptibility_Distribution = 1 - config.parameters.Susceptibility_Initialization_Distribution_Type = 'DISTRIBUTION_COMPLEX' - - - # ***** Interventions ***** - config.parameters.Enable_Interventions = 1 - config.parameters.Campaign_Filename = gdata.camp_file - - - # ***** Network Infectivity ***** - ni_coeff = np.exp(max_coeff_ref(2.0) + -2.0) - - config.parameters.Enable_Network_Infectivity = 1 - - config.parameters.Network_Infectivity_Coefficient = [ni_coeff] - config.parameters.Network_Infectivity_Exponent = [2.0] - config.parameters.Network_Infectivity_Max_Export_Frac = 0.1 - config.parameters.Network_Infectivity_Min_Distance = 1 - - - # ***** Infectivity ***** - config.parameters.Enable_Acquisition_Heterogeneity = 0 - config.parameters.Enable_Infection_Rate_Overdispersion = 0 - - config.parameters.Enable_Infectivity_Reservoir = 1 - - - # ***** Multistrain ***** - - config.parameters.Enable_Strain_Tracking = 1 - config.parameters.Enable_Genome_Dependent_Infectivity = 1 - config.parameters.Enable_Genome_Mutation = 0 - - config.parameters.Number_of_Clades = 1 - config.parameters.Log2_Number_of_Genomes_per_Clade = 1 - config.parameters.Genome_Infectivity_Multipliers = [1.0, 0.0] - - - # ***** Adapted sampling ***** - config.parameters.Individual_Sampling_Type = 'ADAPTED_SAMPLING_BY_IMMUNE_STATE' - config.parameters.Min_Node_Population_Samples = gdata.demog_min_pop - config.parameters.Base_Individual_Sample_Rate = INIT_AGENT/INIT_POP - config.parameters.Relative_Sample_Rate_Immune = 0.02 - config.parameters.Immune_Threshold_For_Downsampling = 1.0e-5 - config.parameters.Immune_Downsample_Min_Age = 365.0 - - - # ***** Demographic parameters ***** - config.parameters.Enable_Demographics_Builtin = 0 - - config.parameters.Enable_Vital_Dynamics = 1 - - config.parameters.Enable_Birth = 1 - config.parameters.Birth_Rate_Dependence = 'POPULATION_DEP_RATE' - config.parameters.Enable_Aging = 1 - config.parameters.Age_Initialization_Distribution_Type = 'DISTRIBUTION_COMPLEX' - config.parameters.Enable_Natural_Mortality = 1 - config.parameters.Death_Rate_Dependence = 'NONDISEASE_MORTALITY_BY_YEAR_AND_AGE_FOR_EACH_GENDER' - - config.parameters.Demographics_Filenames = gdata.demog_files - - - # ***** Reporting ***** - config.parameters.Enable_Default_Reporting = 1 - config.parameters.Enable_Demographics_Reporting = 1 - - config.parameters.Enable_Event_DB = 1 - config.parameters.SQL_Start_Time = gdata.start_log - config.parameters.SQL_Events = ["NewlySymptomatic","GP_EVENT_000"] - - config.parameters.Custom_Reports_Filename = gdata.reports_file - - - - return config - -#******************************************************************************** - -def configBuilder(): - - FILE_CONFIG = 'config.json' - SCHEMA_PATH = gdata.schema_path - - default_conf = dfs.get_default_config_from_schema(SCHEMA_PATH,as_rod=True) - - # Probably ought to be an emod-api call - config_obj = update_config_obj(default_conf); - config_obj.parameters.finalize() - with open(FILE_CONFIG, 'w') as fid01: - json.dump(config_obj, fid01, sort_keys=True, indent=4) - - - return FILE_CONFIG - -#******************************************************************************** \ No newline at end of file diff --git a/model_measles_nga02/Assets/python/builder_demographics.py b/model_measles_nga02/Assets/python/builder_demographics.py deleted file mode 100644 index a33761d2..00000000 --- a/model_measles_nga02/Assets/python/builder_demographics.py +++ /dev/null @@ -1,306 +0,0 @@ -#******************************************************************************** -# -# Builds a demographics file and overlays for input to the DTK. -# -#******************************************************************************** - -import os, sys, json - -import global_data as gdata - -import numpy as np -import scipy.optimize as opt - -from refdat_population_admin02 import data_dict as dict_pop -from refdat_area_admin02 import data_dict as dict_area -from refdat_location_admin02 import data_dict as dict_longlat - -from refdat_birthrate import data_dict as dict_birth - -from aux_demo_calc import demoCalc_AgeDist - -from emod_api.demographics.Demographics import Demographics, \ - DemographicsOverlay -from emod_api.demographics.Node import Node -from emod_api.demographics.PropertiesAndAttributes import IndividualAttributes, \ - NodeAttributes - -#******************************************************************************** - -mr_xval = [ 0.6, 1829.5, 1829.6, 3659.5, 3659.6, 5489.5, - 5489.6, 7289.5, 7289.6, 9119.5, 9119.6, 10949.5, - 10949.6, 12779.5, 12779.6, 14609.5, 14609.6, 16439.5, - 16439.6, 18239.5, 18239.6, 20069.5, 20069.6, 21899.5, - 21899.6, 23729.5, 23729.6, 25559.5, 25559.6, 27389.5, - 27389.6, 29189.5, 29189.6, 31019.5, 31019.6, 32849.5, - 32849.6, 34679.5, 34679.6, 36509.5, 36509.6, 38339.5] - -pop_age_days = [ 0, 1825, 3650, 5475, 7300, 9125, - 10950, 12775, 14600, 16425, 18250, 20075, - 21900, 23725, 25550, 27375, 29200, 31025, - 32850, 34675, 36500] - -#******************************************************************************** - -def demographicsBuilder(): - - BASE_YEAR = gdata.base_year - START_YEAR = gdata.start_year - MAX_DAILY_MORT = 0.01 - - DEMOG_FILENAME = 'demographics.json' - PATH_OVERLAY = 'demog_overlay' - POP_DAT_STR = 'NGA' - REF_NAME = 'ICME_NGA' - - if(not os.path.exists(PATH_OVERLAY)): - os.mkdir(PATH_OVERLAY) - - - # ***** Get variables for this simulation ***** - STATE_NAME = gdata.var_params['nga_state_name'] - - R0 = gdata.var_params['R0'] - - - # ***** Load reference data ***** - fname_pop = os.path.join('Assets','data','pop_dat_{:s}.csv'.format(POP_DAT_STR)) - pop_input = np.loadtxt(fname_pop, dtype=int, delimiter=',') - - year_vec = pop_input[0,:] - BASE_YEAR - year_init = START_YEAR - BASE_YEAR - pop_mat = pop_input[1:,:] + 0.1 - - pop_init = [np.interp(year_init, year_vec, pop_mat[idx,:]) for idx in range(pop_mat.shape[0])] - - - # ***** Populate nodes in primary file ***** - node_list = list() - node_id = 0 - ipop_time = dict() - - GEOG_LIST = ['AFRO:NIGERIA:{:s}'.format(STATE_NAME)] - - for loc_name in dict_pop: - if(any([loc_name.startswith(val) for val in GEOG_LIST])): - ipop_time[loc_name] = dict_pop[loc_name][1] + 0.5 - node_id = node_id + 1 - - node_obj = Node(lat = dict_longlat[loc_name][1], - lon = dict_longlat[loc_name][0], - pop = dict_pop[loc_name][0], - name = loc_name, - forced_id = node_id, - area = dict_area[loc_name]) - - imp_rate = R0/6.0 * dict_pop[loc_name][0] * 1.0e-6 - node_obj.node_attributes.extra_attributes = {'InfectivityReservoirSize': imp_rate} - - node_list.append(node_obj) - - - # ***** Write node name bookkeeping ***** - - nname_dict = {node_obj.name: node_obj.forced_id for node_obj in node_list} - node_rep_list = sorted([nname for nname in dict_pop.keys() if - any([nname.startswith(val+':') or val == nname for val in GEOG_LIST])]) - rep_groups = {nrep:[nname_dict[val] for val in nname_dict.keys() if val.startswith(nrep+':') or val == nrep] - for nrep in node_rep_list} - - gdata.demog_node_map = rep_groups - - - # ***** Prune small nodes ***** - - rev_node_list = [node_obj for node_obj in node_list - if node_obj.node_attributes.initial_population >= gdata.demog_min_pop] - node_list = rev_node_list - node_name_dict = {node_obj.name: node_obj.forced_id for node_obj in node_list} - - gdata.demog_node = node_name_dict - gdata.max_node_id = max([node_name_dict[val] for val in node_name_dict]) - - - # ***** Create primary file ***** - - demog_obj = Demographics(nodes=node_list, idref=REF_NAME) - - # Save filename to global data for use in other functions - gdata.demog_files.append(DEMOG_FILENAME) - - - # ***** Update defaults in primary file **** - - demog_obj.raw['Defaults']['NodeAttributes'].clear() - nadict = dict() - demog_obj.raw['Defaults']['NodeAttributes'].update(nadict) - - demog_obj.raw['Defaults']['IndividualAttributes'].clear() - iadict = dict() - demog_obj.raw['Defaults']['IndividualAttributes'].update(iadict) - - - # ***** Calculate vital dynamics **** - - diff_ratio = (pop_mat[:-1,:-1]-pop_mat[1:,1:])/pop_mat[:-1,:-1] - t_delta = np.diff(year_vec) - pow_vec = 365.0*t_delta - mortvecs = 1.0-np.power(1.0-diff_ratio,1.0/pow_vec) - mortvecs = np.minimum(mortvecs, MAX_DAILY_MORT) - mortvecs = np.maximum(mortvecs, 0.0) - tot_pop = np.sum(pop_mat,axis=0) - tpop_mid = (tot_pop[:-1]+tot_pop[1:])/2.0 - pop_corr = np.exp(-mortvecs[0,:]*pow_vec/2.0) - - brate_vec = np.round(pop_mat[0,1:]/tpop_mid/t_delta*1000.0,1)/pop_corr - brate_val = np.interp(year_init, year_vec[:-1], brate_vec) - - yrs_off = year_vec[:-1]-year_init - yrs_dex = (yrs_off>0) - - brmultx_01 = np.array([0.0] + (365.0*yrs_off[yrs_dex]).tolist()) - brmulty_01 = np.array([1.0] + (brate_vec[yrs_dex]/brate_val).tolist()) - brmultx_02 = np.zeros(2*len(brmultx_01)-1) - brmulty_02 = np.zeros(2*len(brmulty_01)-1) - - brmultx_02[0::2] = brmultx_01[0:] - brmulty_02[0::2] = brmulty_01[0:] - brmultx_02[1::2] = brmultx_01[1:]-0.5 - brmulty_02[1::2] = brmulty_01[0:-1] - - gdata.brate_mult_x = brmultx_02.tolist() - gdata.brate_mult_y = brmulty_02.tolist() - - - # ***** Write vital dynamics and susceptibility initialization overlays ***** - - # Age initialization magic - brth_rate = dict_birth[GEOG_LIST[0]] - mort_init = [np.interp(year_init, year_vec[:-1], mortvecs[idx,:]) for idx in range(mortvecs.shape[0])] - - d_rate_y = np.zeros(len(mr_xval),dtype=float) - d_rate_y[0:-2:2] = mort_init - d_rate_y[1:-2:2] = mort_init - d_rate_y[-2:] = MAX_DAILY_MORT - d_rate_y = d_rate_y.tolist() - - d_rate_x = mr_xval - force_v = 12*[1.0] # No seasonal forcing - (grow_rate, age_x, age_y) = demoCalc_AgeDist(brth_rate,d_rate_x,d_rate_y) - - # Update initial node populations - for node_dict in demog_obj.nodes: - node_name = node_dict.name - node_id = node_dict.forced_id - ref_year = ipop_time[node_name] - mult_fac = grow_rate**(START_YEAR-ref_year) - new_pop = int(mult_fac * node_dict.node_attributes.initial_population) - node_dict.node_attributes.initial_population = new_pop - - # Save total initial population - gdata.init_pop = sum([node_obj.pop for node_obj in node_list]) - - # Overlay json - vd_over_dict = dict() - - mort_vec_X = mr_xval - mort_year = np.zeros(2*year_vec.shape[0]-3) - - mort_year[0::2] = year_vec[0:-1] - mort_year[1::2] = year_vec[1:-1]-1e-4 - mort_year = mort_year.tolist() - - mort_mat = np.zeros((len(mort_vec_X),len(mort_year))) - - mort_mat[0:-2:2,0::2] = mortvecs - mort_mat[1:-2:2,0::2] = mortvecs - mort_mat[0:-2:2,1::2] = mortvecs[:,:-1] - mort_mat[1:-2:2,1::2] = mortvecs[:,:-1] - mort_mat[-2: , :] = MAX_DAILY_MORT - - # Vital dynamics overlays - vd_over_dict['Defaults'] = { 'IndividualAttributes': dict() , - 'NodeAttributes': dict() } - - vd_over_dict['Metadata'] = { 'IdReference': REF_NAME } - - vd_over_dict['Nodes'] = [{'NodeID':node_obj.forced_id} for node_obj in node_list] - - vd_over_dict['Defaults']['NodeAttributes'] = { 'BirthRate': brth_rate } - - vd_over_dict['Defaults']['IndividualAttributes'] = { 'AgeDistribution': dict() , - 'MortalityDistributionMale': dict() , - 'MortalityDistributionFemale': dict() } - - vd_over_dict['Defaults']['IndividualAttributes']['AgeDistribution']['DistributionValues'] = [age_x] - vd_over_dict['Defaults']['IndividualAttributes']['AgeDistribution']['ResultScaleFactor'] = 1 - vd_over_dict['Defaults']['IndividualAttributes']['AgeDistribution']['ResultValues'] = [age_y] - - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionMale']['AxisNames'] = ['age','year'] - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionMale']['AxisScaleFactors'] = [1,1] - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionMale']['NumDistributionAxes'] = 2 - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionMale']['NumPopulationGroups'] = [len(mort_vec_X), len(mort_year)] - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionMale']['PopulationGroups'] = [mort_vec_X, mort_year] - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionMale']['ResultScaleFactor'] = 1 - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionMale']['ResultValues'] = mort_mat.tolist() - - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionFemale']['AxisNames'] = ['age','year'] - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionFemale']['AxisScaleFactors'] = [1,1] - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionFemale']['NumDistributionAxes'] = 2 - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionFemale']['NumPopulationGroups'] = [len(mort_vec_X), len(mort_year)] - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionFemale']['PopulationGroups'] = [mort_vec_X, mort_year] - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionFemale']['ResultScaleFactor'] = 1 - vd_over_dict['Defaults']['IndividualAttributes']['MortalityDistributionFemale']['ResultValues'] = mort_mat.tolist() - - nfname = DEMOG_FILENAME.rsplit('.',1)[0] + '_vd.json' - nfname = os.path.join(PATH_OVERLAY,nfname) - gdata.demog_files.append(nfname) - - with open(nfname, 'w') as fid01: - json.dump(vd_over_dict, fid01, indent=3) - - # Calculate initial susceptibilities - targ_frac = 1.1*(1.0/R0) # Tries to aim for Reff of 1.1; - - # Stuff below ought to get wrapped into a separate function. It's doing an implicit solve - # of an exponential decay mapped onto the age distribution specified above. The target - # area-under-the-curve is the value specified by targ_frac above. Just aims to get close. - # May break for very low target frac values (e.g., < 0.01) - age_year = np.array(age_y[1:])/365.0 - age_prob = np.diff(np.array(age_x)) - - boxer = lambda x1: np.sum(np.minimum(np.exp(x1*(age_year-0.65)),1.0)*age_prob)-targ_frac - iSP0 = opt.brentq(boxer, a=-80, b=0) - isus_x = [0] + (np.logspace(1.475,4.540,20,dtype=int)).tolist() - isus_y = [round(np.minimum(np.exp(iSP0*(val/365.0-0.65)),1.0),4) for val in isus_x] - - # Initial susceptibility overlays - dover_obj = DemographicsOverlay() - dover_obj.individual_attributes = IndividualAttributes() - dover_obj.individual_attributes.susceptibility_distribution = IndividualAttributes.SusceptibilityDistribution() - - dover_obj.meta_data = {'IdReference': REF_NAME} - - dover_obj.nodes = [node_obj.forced_id for node_obj in node_list] - - dover_obj.individual_attributes.susceptibility_distribution.distribution_values = isus_x - dover_obj.individual_attributes.susceptibility_distribution.result_scale_factor = 1 - dover_obj.individual_attributes.susceptibility_distribution.result_values = isus_y - - nfname = DEMOG_FILENAME.rsplit('.',1)[0] + '_is.json' - nfname = os.path.join(PATH_OVERLAY,nfname) - gdata.demog_files.append(nfname) - dover_obj.to_file(file_name=nfname) - - - # ***** Write primary demographics file ***** - - demog_obj.generate_file(name=DEMOG_FILENAME) - - # Save the demographics object for use in other functions - gdata.demog_object = demog_obj - - - return None - -#******************************************************************************* \ No newline at end of file diff --git a/model_measles_nga02/Assets/python/builder_reports.py b/model_measles_nga02/Assets/python/builder_reports.py deleted file mode 100644 index 7cb9d397..00000000 --- a/model_measles_nga02/Assets/python/builder_reports.py +++ /dev/null @@ -1,25 +0,0 @@ -# ***************************************************************************** -# -# Configuration file for custom reporters. -# -# ***************************************************************************** - -from emod_report_func import build_file, write_file, report_strain - -# ***************************************************************************** - - -def reportsBuilder(): - - # Dictionary to be written - json_set = build_file() - - # Configurations - report_strain(json_set) - - # Write file - write_file(json_set) - - return None - -# ***************************************************************************** diff --git a/model_measles_nga02/Assets/python/dtk_in_process.py b/model_measles_nga02/Assets/python/dtk_in_process.py deleted file mode 100644 index 0d66fda5..00000000 --- a/model_measles_nga02/Assets/python/dtk_in_process.py +++ /dev/null @@ -1,25 +0,0 @@ -#******************************************************************************** -# -#******************************************************************************** - -import os, sys, json - -import global_data as gdata - -import numpy as np - -#******************************************************************************* - -def application(timestep): - - # Example interface for in-processing; - if(gdata.first_call_bool): - gdata.first_call_bool = False - - timeval = float(timestep) - print("Hello and goodbye from in-process at time {:.1f}".format(timeval)) - - - return None - -#******************************************************************************* diff --git a/model_measles_nga02/Assets/python/dtk_post_process.py b/model_measles_nga02/Assets/python/dtk_post_process.py deleted file mode 100644 index 80017e83..00000000 --- a/model_measles_nga02/Assets/python/dtk_post_process.py +++ /dev/null @@ -1,136 +0,0 @@ -#******************************************************************************** -# -#******************************************************************************** - -import os, sys, shutil, json, sqlite3 - -import global_data as gdata - -import numpy as np - -#******************************************************************************** - -#******************************************************************************** - -def application(output_path): - - SIM_IDX = gdata.sim_index - BASE_YEAR = gdata.base_year - - - # ***** Get variables for this simulation ***** - TIME_YEARS = gdata.var_params['num_years'] - SIA_ADDLIST = gdata.var_params['test_sias'] - - - DAY_BINS_MO = [31,28,31,30,31,30,31,31,30,31,30,31] - BIN_EDGES_MO = np.cumsum(TIME_YEARS*DAY_BINS_MO) + gdata.start_log + 0.5 - BIN_EDGES_MO = np.insert(BIN_EDGES_MO, 0, gdata.start_log + 0.5) - - DAY_BINS_YR = [365] - BIN_EDGES_YR = np.cumsum(TIME_YEARS*DAY_BINS_YR) + gdata.start_log + 0.5 - BIN_EDGES_YR = np.insert(BIN_EDGES_YR, 0, gdata.start_log + 0.5) - - - # Prep output dictionary - key_str = '{:05d}'.format(SIM_IDX) - parsed_dat = {key_str: dict()} - - - # Connect to SQL database; retreive new entries - connection_obj = sqlite3.connect('simulation_events.db') - cursor_obj = connection_obj.cursor() - - sql_cmd = "SELECT * FROM SIM_EVENTS WHERE SIM_TIME > 0" - cursor_obj.execute(sql_cmd) - row_list = cursor_obj.fetchall() - - data_time = np.array([val[0] for val in row_list], dtype = float) # Time - data_event = np.array([val[1] for val in row_list], dtype = str ) # Event - data_node = np.array([val[2] for val in row_list], dtype = int ) # Node - data_mcw = np.array([val[4] for val in row_list], dtype = float) # MCW - - - # Sample population pyramid every year - with open(os.path.join(output_path,'DemographicsSummary.json')) as fid01: - demog_output = json.load(fid01) - - age_key_list = [ '<5', '5-9', '10-14', '15-19', '20-24', '25-29', - '30-34', '35-39', '40-44', '45-49', '50-54', '55-59', - '60-64', '65-69', '70-74', '75-79', '80-84', '85-89', - '90-94', '95-99'] - pyr_dat = np.zeros((int(TIME_YEARS)+1,len(age_key_list))) - - for k1 in range(len(age_key_list)): - age_key_str = 'Population Age {:s}'.format(age_key_list[k1]) - age_vec_dat = np.array(demog_output['Channels'][age_key_str]['Data']) - pyr_dat[0, k1] = age_vec_dat[0] - pyr_dat[1:, k1] = age_vec_dat[364::365] - - parsed_dat[key_str]['pyr_data'] = pyr_dat.tolist() - - - # Get campaign doses - parsed_dat[key_str]['sia_summary'] = list() - - with open(os.path.join(output_path,'InsetChart.json')) as fid01: - inset_chart = json.load(fid01) - sia_doses = np.diff(np.array(inset_chart['Channels']['Campaign Cost']['Data'])) - sia_doses = sia_doses[sia_doses>0] - - - # Post-process strain reporter - strain_dat = np.loadtxt(os.path.join(output_path,'ReportStrainTracking01.csv'),delimiter=',',skiprows=1,ndmin=2) - rep_bool = (strain_dat[:,3]==1) - targ_dat = strain_dat[rep_bool,:] - for k1 in range(len(SIA_ADDLIST)): - year_val = SIA_ADDLIST[k1] - targ_val = sia_doses[k1] - start_val = np.ceil((year_val-BASE_YEAR)*365.0) - rep_bool = (targ_dat[:,0]==start_val) - num_inf = np.sum(targ_dat[rep_bool,4]) - parsed_dat[key_str]['sia_summary'].append([float(start_val), float(num_inf), float(targ_val)]) - - - # Aggregate new infections to timeseries by month - gidx = (data_event=='NewlySymptomatic') - (inf_mo, tstamps_mo) = np.histogram(data_time[gidx], - bins = BIN_EDGES_MO, - weights = data_mcw[gidx]) - - # Correct for SIA doses as infections - for k1 in range(len(parsed_dat[key_str]['sia_summary'])): - for k2 in range(len(BIN_EDGES_MO)): - if(parsed_dat[key_str]['sia_summary'][k1][0]=0) - - -pyr_mat_avg = np.zeros((num_years+1,20)) -pyr_mat_var = np.zeros((num_years+1,20)) - -for pop_dat_str in pop_dat_opt: - sidx = (pop_dat_var==pop_dat_str) - pyr_mat_avg += np.mean(pyr_mat[fidx&sidx,:,:],axis=0) - pyr_mat_var += np.var(pyr_mat[fidx&sidx,:,:],axis=0) - - -fname_pop = os.path.join('..','Assets','data','pop_dat_NGA.csv') -pop_input = np.loadtxt(fname_pop, dtype=int, delimiter=',') -year_vec_dat = pop_input[0, :] -pop_mat_dat = pop_input[1:,:] - - -fig01 = plt.figure(figsize=(7*num_charts,12)) - -# Figures - Sims -for k1 in range(num_charts): - - axs01 = fig01.add_subplot(2, num_charts, k1+1) - plt.sca(axs01) - - axs01.grid(visible=True, which='major', ls='-', lw=0.5, label='') - axs01.grid(visible=True, which='minor', ls=':', lw=0.1) - axs01.set_axisbelow(True) - - axs01.set_xlabel('Percentage', fontsize=14) - axs01.set_ylabel('Age (yrs)', fontsize=14) - - if(k1 == num_charts-1): - axs02 = axs01.twinx() - axs02.set_ylabel('Simulation', fontsize=24) - axs02.set_yticks(ticks=[0,1]) - axs02.set_yticklabels(['','']) - - axs01.set_xlim( -12, 12) - axs01.set_ylim( 0, 100) - - ticloc = [-12, -10, -8, -6, -4, -2, 0, 2, 4, 6, 8, 10, 12] - ticlab = ['12', '10', '8', '6', '4', '2', '0', '2', '4', '6', '8', '10', '12'] - axs01.set_xticks(ticks=ticloc) - axs01.set_xticklabels(ticlab) - - gidx = np.argwhere(year_vec==chart_yrs[k1])[0][0] - pop_dat = pyr_mat_avg[gidx,:] - pop_dat_err = np.sqrt(pyr_mat_var[gidx,:]) - tpop = np.sum(pop_dat) - - pop_dat_n = 100*pop_dat/tpop - pop_dat_n_err = 100*pop_dat_err/tpop - - ydat = np.array(pop_age_days)/365.0 - 2.5 - - axs01.barh(ydat[1:], pop_dat_n/2.0, height=4.75, xerr=pop_dat_n_err, color=CF) - axs01.barh(ydat[1:], -pop_dat_n/2.0, height=4.75, xerr=pop_dat_n_err, color=CM) - - axs01.text( -11, 92.5, '{:04d}'.format(year_vec[gidx]), fontsize=18) - axs01.text( 5, 87.5, 'Total Pop\n {:4.1f}M'.format(tpop/1e6), fontsize=18) - -# Figures - Reference -for k1 in range(num_charts): - - axs01 = fig01.add_subplot(2, num_charts, k1+1+num_charts) - plt.sca(axs01) - - axs01.grid(visible=True, which='major', ls='-', lw=0.5, label='') - axs01.grid(visible=True, which='minor', ls=':', lw=0.1) - axs01.set_axisbelow(True) - - axs01.set_xlabel('Percentage', fontsize=14) - axs01.set_ylabel('Age (yrs)', fontsize=14) - - if(k1 == num_charts-1): - axs02 = axs01.twinx() - axs02.set_ylabel('Reference', fontsize=24) - axs02.set_yticks(ticks=[0,1]) - axs02.set_yticklabels(['','']) - - axs01.set_xlim( -12, 12) - axs01.set_ylim( 0, 100) - - ticloc = [-12, -10, -8, -6, -4, -2, 0, 2, 4, 6, 8, 10, 12] - ticlab = ['12', '10', '8', '6', '4', '2', '0', '2', '4', '6', '8', '10', '12'] - axs01.set_xticks(ticks=ticloc) - axs01.set_xticklabels(ticlab) - - gidx = np.argwhere(year_vec_dat==chart_yrs[k1])[0][0] - pop_dat = pop_mat_dat[:,gidx] - tpop = np.sum(pop_dat) - - pop_dat_n = 100*(pop_dat[:-1]/tpop) - - axs01.barh(ydat[1:], pop_dat_n/2.0, height=4.75, color=CF) - axs01.barh(ydat[1:], -pop_dat_n/2.0, height=4.75, color=CM) - - axs01.text( -11, 92.5, '{:04d}'.format(year_vec_dat[gidx]), fontsize=18) - axs01.text( 5, 87.5, 'Total Pop\n {:4.1f}M'.format(tpop/1e6), fontsize=18) - -# Save figure -plt.tight_layout() -plt.savefig('fig_pyr_NGA_01.png') -plt.close() - - -#******************************************************************************* \ No newline at end of file diff --git a/model_measles_nga02/figure_pyramids/make_fig_pyr_adm01.py b/model_measles_nga02/figure_pyramids/make_fig_pyr_adm01.py deleted file mode 100644 index df41bf17..00000000 --- a/model_measles_nga02/figure_pyramids/make_fig_pyr_adm01.py +++ /dev/null @@ -1,119 +0,0 @@ -#******************************************************************************* - -import os, json, sys - -sys.path.append(os.path.join('..','Assets','python')) - -import numpy as np -import matplotlib.pyplot as plt - -import global_data as gdata - -from builder_demographics import pop_age_days - -#******************************************************************************* - - -DIRNAME = 'experiment_demog01' - - -CM = np.array([ 70,130,180])/255 -CF = np.array([238,121,137])/255 - - -STATE_DIR = 'adm01_pyramids' -if(not os.path.exists(STATE_DIR)): - os.mkdir(STATE_DIR) - - -# Sim outputs -tpath = os.path.join('..',DIRNAME) - -with open(os.path.join(tpath,'data_brick.json')) as fid01: - data_brick = json.load(fid01) - -with open(os.path.join(tpath,'param_dict.json')) as fid01: - param_dict = json.load(fid01) - -init_year = int(gdata.start_year) -nsims = int(param_dict['NUM_SIMS']) -num_years = int(param_dict['EXP_CONSTANT']['num_years']) -pop_dat_var = param_dict['EXP_VARIABLE']['nga_state_name'] -pop_dat_opt = list(set(pop_dat_var)) -pop_dat_var = np.array(pop_dat_var) - -tvals_mo = data_brick.pop('tstamps_mo') -tvals_yr = data_brick.pop('tstamps_yr') - -pyr_mat = np.zeros((nsims,num_years+1,20))-1 -year_vec = np.arange(init_year, init_year+num_years+1) -chart_yrs = year_vec[np.mod(year_vec,10)==5] -num_charts = chart_yrs.shape[0] - -for sim_idx_str in data_brick: - sim_idx = int(sim_idx_str) - pyr_mat[sim_idx,:,:] = np.array(data_brick[sim_idx_str]['pyr_data']) - -fidx = (pyr_mat[:,0,0]>=0) - - -for pop_dat_str in pop_dat_opt: - - fig01 = plt.figure(figsize=(7*num_charts,6)) - - sidx = (pop_dat_var==pop_dat_str) - - pyr_mat_avg = np.mean(pyr_mat[fidx&sidx,:,:],axis=0) - pyr_mat_std = np.std(pyr_mat[fidx&sidx,:,:],axis=0) - - # Figures - Sims - for k1 in range(num_charts): - - gidx = np.argwhere(year_vec==chart_yrs[k1])[0][0] - - axs01 = fig01.add_subplot(1, num_charts, k1+1) - plt.sca(axs01) - - axs01.grid(visible=True, which='major', ls='-', lw=0.5, label='') - axs01.grid(visible=True, which='minor', ls=':', lw=0.1) - axs01.set_axisbelow(True) - - axs01.set_xlabel('Percentage', fontsize=14) - axs01.set_ylabel('Age (yrs)', fontsize=14) - - if(k1 == num_charts-1): - axs02 = axs01.twinx() - axs02.set_ylabel('Simulation', fontsize=24) - axs02.set_yticks(ticks=[0,1]) - axs02.set_yticklabels(['','']) - - axs01.set_xlim( -12, 12) - axs01.set_ylim( 0, 100) - - ticloc = [-12, -10, -8, -6, -4, -2, 0, 2, 4, 6, 8, 10, 12] - ticlab = ['12', '10', '8', '6', '4', '2', '0', '2', '4', '6', '8', '10', '12'] - axs01.set_xticks(ticks=ticloc) - axs01.set_xticklabels(ticlab) - - ydat = np.array(pop_age_days)/365.0 - 2.5 - pop_dat = pyr_mat_avg[gidx,:] - pop_dat_err = pyr_mat_std[gidx,:] - tpop = np.sum(pop_dat) - - pop_dat_n = 100*pop_dat/tpop - pop_dat_n_err = 100*pop_dat_err/tpop - - axs01.barh(ydat[1:], pop_dat_n/2.0, height=4.75, xerr=pop_dat_n_err, color=CF) - axs01.barh(ydat[1:], -pop_dat_n/2.0, height=4.75, xerr=pop_dat_n_err, color=CM) - - axs01.text( -11, 87.5, '{:s}\n{:04d}'.format(pop_dat_str.replace('_',' '), - year_vec[gidx]), fontsize=18) - axs01.text( 5, 87.5, 'Total Pop\n {:4.1f}M'.format(tpop/1e6), fontsize=18) - - # Save figure - plt.tight_layout() - plt.savefig(os.path.join(STATE_DIR,'fig_pyr_{:s}_01.png'.format(pop_dat_str))) - plt.close() - - -#******************************************************************************* \ No newline at end of file diff --git a/model_measles_nga02/figure_routine/make_fig_RI_adm00.py b/model_measles_nga02/figure_routine/make_fig_RI_adm00.py deleted file mode 100644 index debdd272..00000000 --- a/model_measles_nga02/figure_routine/make_fig_RI_adm00.py +++ /dev/null @@ -1,102 +0,0 @@ -#******************************************************************************* - -import os, json, sys - -sys.path.append(os.path.join('..','Assets','python')) - -import numpy as np -import matplotlib.pyplot as plt - -import global_data as gdata - -#******************************************************************************* - -icme_nga_ref_ri = [0.505,0.555,0.571,0.597,0.621] -icme_nga_ref_yr = [ 2015, 2016, 2017, 2018, 2019] - -#******************************************************************************* - - -DIRNAME = 'experiment_demog01' - - -# Sim outputs -tpath = os.path.join('..',DIRNAME) - -with open(os.path.join(tpath,'data_brick.json')) as fid01: - data_brick = json.load(fid01) - -with open(os.path.join(tpath,'param_dict.json')) as fid01: - param_dict = json.load(fid01) - -init_year = int(gdata.start_year) -nsims = int(param_dict['NUM_SIMS']) -num_years = int(param_dict['EXP_CONSTANT']['num_years']) -change_ri = param_dict['EXP_CONSTANT']['change_RI'] -pop_dat_var = param_dict['EXP_VARIABLE']['nga_state_name'] -pop_dat_opt = list(set(pop_dat_var)) -pop_dat_var = np.array(pop_dat_var) - -tvals_mo = data_brick.pop('tstamps_mo') -tvals_yr = data_brick.pop('tstamps_yr') -riBlock = np.zeros((nsims,len(tvals_yr)))-1 -nbBlock = np.zeros((nsims,len(tvals_yr))) - -for sim_idx_str in data_brick: - riBlock[int(sim_idx_str),:] = np.array(data_brick[sim_idx_str]['ri_yr']) - nbBlock[int(sim_idx_str),:] = np.diff([0]+data_brick[sim_idx_str]['births_yr']) - -fidx = (riBlock[:,0]>=0) - - -# Figure -fig01 = plt.figure(figsize=(8,6)) -axs01 = fig01.add_subplot(111) -plt.sca(axs01) - -axs01.grid(visible=True, which='major', ls='-', lw=0.5, label='') -axs01.grid(visible=True, which='minor', ls=':', lw=0.1) -axs01.tick_params(axis='both', which='major', labelsize=14) -axs01.set_axisbelow(True) - - -icme_nga_ref_yr.append(icme_nga_ref_yr[-1] + 1.0) -icme_nga_ref_ri.append(np.mean(icme_nga_ref_ri[-3:])) -for k2 in range(1,100): - new_time = icme_nga_ref_yr[-1] + 1.0 - new_rate = max((1.0 - (1.0-icme_nga_ref_ri[-1]) * (1.0-change_ri)),0.0) - icme_nga_ref_yr.append(new_time) - icme_nga_ref_ri.append(new_rate) - -axs01.plot(np.array(icme_nga_ref_yr)+0.5,100*np.array(icme_nga_ref_ri), - 'k.-',lw=2.0,ms=8.0,label='Reference') - -ri_tot = np.zeros(len(tvals_yr)) -nb_tot = np.zeros(len(tvals_yr)) -for pop_dat_str in pop_dat_opt: - gidx = (pop_dat_var==pop_dat_str) - ri_tot += np.mean(riBlock[fidx&gidx,:],axis=0) - nb_tot += np.mean(nbBlock[fidx&gidx,:],axis=0) -yval = ri_tot/nb_tot -xval = np.array(tvals_yr)/365+1900 - -axs01.bar(xval,100*yval, color='C0',edgecolor='k', width=1.0, label='Simulated') -axs01.set_ylabel('MCV RI Coverage (%)',fontsize=18) - -axs01.set_xlim(2015, 2045) -axs01.set_ylim( 46, 64) - -ticloc = np.arange(46,65,2) -ticlab = ['46','48','50','52','54','56','58','60','62','64'] -axs01.set_yticks(ticks=ticloc) -axs01.set_yticklabels(ticlab) - -axs01.legend() - -# Save figure -plt.tight_layout() -plt.savefig('fig_RI_NGA_01.png') -plt.close() - - -#******************************************************************************* \ No newline at end of file diff --git a/model_rubella01/Assets/python/builder_config.py b/model_rubella01/Assets/python/builder_config.py index 5d60714c..9c961224 100644 --- a/model_rubella01/Assets/python/builder_config.py +++ b/model_rubella01/Assets/python/builder_config.py @@ -6,7 +6,8 @@ import global_data as gdata -from emod_constants import CAMP_FILE, REPORTS_FILE, BASE_YEAR +from emod_constants import CAMP_FILE, REPORTS_FILE, BASE_YEAR, \ + DIST_CMPLX, DIST_GAUSS, DIST_CONST # ***************************************************************************** @@ -33,14 +34,14 @@ def update_config_obj(config): cp.Wall_Time_Maximum_In_Minutes = gdata.max_clock # Intrahost - cp.Base_Infectivity_Distribution = 'CONSTANT_DISTRIBUTION' + cp.Base_Infectivity_Distribution = DIST_CONST cp.Base_Infectivity_Constant = R0/gdata.inf_prd_mean - cp.Incubation_Period_Distribution = 'GAUSSIAN_DISTRIBUTION' + cp.Incubation_Period_Distribution = DIST_GAUSS cp.Incubation_Period_Gaussian_Mean = 17.0 cp.Incubation_Period_Gaussian_Std_Dev = 2.0 - cp.Infectious_Period_Distribution = 'GAUSSIAN_DISTRIBUTION' + cp.Infectious_Period_Distribution = DIST_GAUSS cp.Infectious_Period_Gaussian_Mean = gdata.inf_prd_mean cp.Infectious_Period_Gaussian_Std_Dev = 2.0 @@ -58,13 +59,12 @@ def update_config_obj(config): cp.Maternal_Acquire_Config.Initial_Effect = 1.0 cp.Maternal_Acquire_Config.Enable_Box_Duration_Distribution = 1 - enum_str = 'GAUSSIAN_DISTRIBUTION' - cp.Maternal_Acquire_Config.Box_Duration_Distribution = enum_str + cp.Maternal_Acquire_Config.Box_Duration_Distribution = DIST_GAUSS cp.Maternal_Acquire_Config.Box_Duration_Gaussian_Mean = 90.0 cp.Maternal_Acquire_Config.Box_Duration_Gaussian_Std_Dev = 48.0 cp.Enable_Initial_Susceptibility_Distribution = 1 - cp.Susceptibility_Initialization_Distribution_Type = 'DISTRIBUTION_COMPLEX' + cp.Susceptibility_Initialization_Distribution_Type = DIST_CMPLX # Interventions cp.Enable_Interventions = 1 @@ -96,7 +96,7 @@ def update_config_obj(config): cp.Enable_Birth = 1 cp.Birth_Rate_Dependence = 'POPULATION_DEP_RATE' cp.Enable_Aging = 1 - cp.Age_Initialization_Distribution_Type = 'DISTRIBUTION_COMPLEX' + cp.Age_Initialization_Distribution_Type = DIST_CMPLX cp.Enable_Natural_Mortality = 1 enum_str = 'NONDISEASE_MORTALITY_BY_YEAR_AND_AGE_FOR_EACH_GENDER' cp.Death_Rate_Dependence = enum_str diff --git a/pyproject.toml b/pyproject.toml index ddbcfcbd..f273402c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -40,6 +40,9 @@ docs = [ lint = [ "flake8", ] +local = [ + "emod-generic", +] test = [ ]