Request: bgVariants and processed eQTL files

[JianiC]

Hi,

I'm benchmarking an enhancer-gene predictor by adapting your eQTL enrichment framework, working through your pipeline.

Two files are referenced in the pipeline config but not in the public repo, and the pipeline can't run without them:

1. Background variants

bgVariants: "/oak/stanford/groups/engreitz/Users/sheth/hg38_resources/backgroundSNPs/all.bg.SNPs.hg38.baseline.v1.1.bed.sorted"

2. eQTL variants (paper's PBMC benchmark)

"/oak/stanford/groups/engreitz/Users/sheth/Data/eQTL_Catalogue_v7/results/2024_0623_coarse_tissues/eQTL_catalogue_v7.processed.PIP0.5.tsv.gz"

Could you share these, or point me at a public download / scripts to regenerate them? I'm hoping to produce numbers comparable to your
paper's.

Thanks!