diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db index 2ec0cb3d..ff13e3ed 100644 Binary files a/_cite/.cache/cache.db and b/_cite/.cache/cache.db differ diff --git a/_data/citations.yaml b/_data/citations.yaml index ce1e2b5a..1026a55f 100644 --- a/_data/citations.yaml +++ b/_data/citations.yaml @@ -1,5 +1,17 @@ # DO NOT EDIT, GENERATED AUTOMATICALLY +- id: doi:10.1101/2025.10.28.685063 + title: Stochastic choice drives variability in patch foraging decisions across species + authors: + - Emma V. Scholey + - Matthew A.J. Apps + - Mark D. Humphries + publisher: openRxiv + date: '2025-10-29' + link: https://doi.org/g98xgz + orcid: 0000-0002-1906-2581 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1523/ENEURO.0431-23.2024 title: The Computational Bottleneck of Basal Ganglia Output (and What to Do About it) @@ -166,7 +178,7 @@ - Mathew H. Evans - Rasmus S. Petersen - Mark D. Humphries - publisher: Cold Spring Harbor Laboratory + publisher: openRxiv date: '2019-12-11' link: https://doi.org/gkt7xc orcid: 0000-0002-1906-2581 diff --git a/_data/simulations.yaml b/_data/simulations.yaml index 1bb73517..3b2772b0 100644 --- a/_data/simulations.yaml +++ b/_data/simulations.yaml @@ -2,7 +2,7 @@ subtitle: Dynamics of the three-dimensional striatum group: featured image: images/blue_wiring.png - link: http://senselab.med.yale.edu/modeldb/ShowModel.asp?model=137502 + link: https://modeldb.science/137502 description: A model of the 3D anatomical network of the striatum's GABAergic microcircuit between the SPNs and FSIs. Neurons are Izhikevich models tuned to reproduce key dynamic properties. Includes dopaminergic modulation of ion channels and synaptic connections. Scalable to any volume of striatal tissue. The code here is from [Humphries et al 2010 PLoS Computational Biology](https://doi.org/10.1371/journal.pcbi.1001011). An updated version of the model is in [Tomkins et al 2014 Front Comput Neurosci](https://doi.org/10.3389/fncom.2013.00192). tags: - striatum @@ -12,7 +12,7 @@ - title: Spiking neuron model of the basal ganglia subtitle: Action selection and spiking neurons image: images/Paper_Figures/SpikingModel.png - link: http://senselab.med.yale.edu/modeldb/ShowModel.asp?model=83559 + link: https://modeldb.science/83559 description: The model in [Humphries et al (2006) J Neurosci](https://doi.org/10.1523/JNEUROSCI.3486-06.2006). tags: - basal ganglia @@ -23,7 +23,7 @@ - title: Control of behaviour by the brainstem reticular formation subtitle: Action selection in the brainstem image: images/scheibel_dendrites_edit.png - link: http://senselab.med.yale.edu/modeldb/ShowModel.asp?model=128816 + link: https://modeldb.science/128816 description: Anatomy and dynamics of the medial reticular formation, and theories for its role in action selection. See review in [Humphries et al (2007) Phil Trans Roy Soc B](https://doi.org/10.1098/rstb.2007.2057). tags: - reticular formation diff --git a/code-simulation/index.md b/code-simulation/index.md index 55ec03f8..cf167b66 100644 --- a/code-simulation/index.md +++ b/code-simulation/index.md @@ -19,7 +19,7 @@ nav: {% include section.html background="images/background.jpg" dark=true %} -{% include button.html icon="fa-solid fa-laptop-code" text="All our models on ModelDB" link="https://senselab.med.yale.edu/modeldb/author_matches.py?author=Humphries+MD" style="button" %} +{% include button.html icon="fa-solid fa-laptop-code" text="All our models on ModelDB" link="https://modeldb.science/modelauthor/Humphries%20MD" style="button" %} {% include section.html %}