From 471af03cfc8053841832860d0543bd1670462d35 Mon Sep 17 00:00:00 2001 From: lauracmurphy Date: Thu, 30 Apr 2026 13:47:45 +0100 Subject: [PATCH] switch to bioio --- episodes/01-opening-and-checking-an-image.md | 1 + episodes/02-applying-filters.md | 1 + episodes/03-thresholding-and-segmentation.md | 1 + episodes/04-measurements.md | 1 + episodes/05-napari.md | 1 + 5 files changed, 5 insertions(+) diff --git a/episodes/01-opening-and-checking-an-image.md b/episodes/01-opening-and-checking-an-image.md index c2aebbf..dc6892a 100644 --- a/episodes/01-opening-and-checking-an-image.md +++ b/episodes/01-opening-and-checking-an-image.md @@ -469,3 +469,4 @@ out the pixel size. - Lookup tables can change how a single-channel image is rendered - An RGB image contains 3 channels for red, green and blue :::::::::::::::::::::::::::::::::::::::::::::::: + diff --git a/episodes/02-applying-filters.md b/episodes/02-applying-filters.md index 68cb510..5dd36f2 100644 --- a/episodes/02-applying-filters.md +++ b/episodes/02-applying-filters.md @@ -242,3 +242,4 @@ subsequent chapters for thresholding and segmentation! - There are many ways of smoothing an image - Different methods will perform better in different situations :::::::::::::::::::::::::::::::::::::::::::::::: + diff --git a/episodes/03-thresholding-and-segmentation.md b/episodes/03-thresholding-and-segmentation.md index 490aaca..1caa9c5 100644 --- a/episodes/03-thresholding-and-segmentation.md +++ b/episodes/03-thresholding-and-segmentation.md @@ -418,3 +418,4 @@ harder to segment than even, solid, rounded shapes. - Processing such as watershed transforms can solve cases where features of interest are very close or stuck together :::::::::::::::::::::::::::::::::::::::::::::::: + diff --git a/episodes/04-measurements.md b/episodes/04-measurements.md index 861b699..e74a986 100644 --- a/episodes/04-measurements.md +++ b/episodes/04-measurements.md @@ -87,3 +87,4 @@ A few notes: - Binary multiplication and `numpy.where` are powerful ways of combining images and masks - The numbers assigned during labelling can be used to select and process one feature at a time :::::::::::::::::::::::::::::::::::::::::::::::: + diff --git a/episodes/05-napari.md b/episodes/05-napari.md index a285f13..6609d45 100644 --- a/episodes/05-napari.md +++ b/episodes/05-napari.md @@ -272,3 +272,4 @@ you would need to add to get it to produce tangible output. - Most operations we performed earlier in Python can also be done in Napari, either graphically or in the terminal :::::::::::::::::::::::::::::::::::::::::::::::: +