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import time, socket
import threading
import os, json
import ast, dill
import torch
from Log.Logging_Class import ModelLogger
from NanoChefModule import NanoChef
from BaseUtils.TCP_Node import BaseTCPNode
dir_name=time.strftime("%Y%m%d")
TOTAL_LOG_FOLDER = "{}/{}".format("Log", dir_name)
if os.path.isdir(TOTAL_LOG_FOLDER) == False:
os.makedirs(TOTAL_LOG_FOLDER)
server_logger_obj = ModelLogger("SeqOptModule", "DEBUG", TOTAL_LOG_FOLDER)
base_tcp_node_obj = BaseTCPNode()
BUFF_SIZE=8192
model_obj_dict={}
total_algorithm_dict={}
def loadModel(filename):
"""
load ML model to use already fitted model later depending on filename.
Arguments
---------
directory_path (str)
filename (str)
Returns
-------
return loaded_model, model_obj
"""
fname = os.path.join(filename)
with open(fname, 'rb') as f:
model_obj = dill.load(f)
return model_obj
def handle_client(client_socket, client_address, server_logger):
try:
server_logger.info("SeqOpt", f"{client_address} is connected.")
data = b''
while True:
part = client_socket.recv(BUFF_SIZE)
# print(part)
if "finish" in part.decode("utf-8") or "success" in part.decode("utf-8"):
break
elif len(data)==0 or "finish" not in part.decode("utf-8") or "success" in part.decode("utf-8"):
data += part
else:
raise ConnectionError("Wrong tcp message in module")
# print(data)
packet_info = str(data.decode()).split(sep="/")
jobID, module_name, action_type, action_data, mode_type = packet_info
if "moduleGeneration" == action_type:
algorithm_dict=ast.literal_eval(action_data)
SeqOpt_obj=NanoChef(algorithm_dict)
model_obj_dict["{}:jobID={}".format(algorithm_dict["subject"],jobID)]=SeqOpt_obj
total_algorithm_dict["{}:jobID={}".format(algorithm_dict["subject"],jobID)]=algorithm_dict
# print("moduleGeneration start")
sendData="success to module generation"
base_tcp_node_obj.checkSocketStatus(client_socket, sendData, module_name, action_type)
# print("moduleGeneration finish")
elif "suggestNextStep" == action_type:
subject=str(action_data)
real_cond_points, norm_cond_points=model_obj_dict["{}:jobID={}".format(subject,jobID)].suggestNextStep()
recommended_recipe={
"real_cond_points":real_cond_points,
"norm_cond_points":norm_cond_points
}
# print("suggestNextStep start")
base_tcp_node_obj.checkSocketStatus(client_socket, recommended_recipe, module_name, action_type)
# print("suggestNextStep finish")
elif "registerPoint" == action_type:
recommended_recipe=ast.literal_eval(action_data)
subject=recommended_recipe["subject"]
input_next_points=recommended_recipe["input_next_points"]
norm_input_next_points=recommended_recipe["norm_input_next_points"]
property_list=recommended_recipe["property_list"]
input_result_list=recommended_recipe["input_result_list"]
algorithm_dict=total_algorithm_dict["{}:jobID={}".format(subject,jobID)]
SeqOpt_obj=NanoChef(algorithm_dict)
previous_SeqOpt_obj=model_obj_dict["{}:jobID={}".format(subject,jobID)]
SeqOpt_obj._norm_space.target=previous_SeqOpt_obj._norm_space.target
SeqOpt_obj._norm_space.params=previous_SeqOpt_obj._norm_space.params
SeqOpt_obj._norm_space.seqs=previous_SeqOpt_obj._norm_space.seqs
SeqOpt_obj._norm_space.propertys=previous_SeqOpt_obj._norm_space.propertys
SeqOpt_obj._real_space.target=previous_SeqOpt_obj._real_space.target
SeqOpt_obj._real_space.params=previous_SeqOpt_obj._real_space.params
SeqOpt_obj._real_space.seqs=previous_SeqOpt_obj._real_space.seqs
SeqOpt_obj._real_space.propertys=previous_SeqOpt_obj._real_space.propertys
SeqOpt_obj.best_loss_list=previous_SeqOpt_obj.best_loss_list
SeqOpt_obj.best_mae_list=previous_SeqOpt_obj.best_mae_list
SeqOpt_obj.best_y_list=previous_SeqOpt_obj.best_y_list
SeqOpt_obj.SeqOpt_obj.nn_block.n_observation=len(SeqOpt_obj._norm_space.res())/len(SeqOpt_obj.reagent_seqs)*2
print("[Before] len(SeqOpt_obj._norm_space.res())", len(SeqOpt_obj._norm_space.res()))
print("[Before] len(SeqOpt_obj._real_space.res())", len(SeqOpt_obj._real_space.res()))
# print("SeqOpt_obj.SeqOpt_obj.nn_block.n_observation", SeqOpt_obj.SeqOpt_obj.nn_block.n_observation)
SeqOpt_obj.model_logger=ModelLogger(SeqOpt_obj.subject, SeqOpt_obj.logLevel, SeqOpt_obj.TOTAL_LOG_FOLDER)
SeqOpt_obj.optimizer = torch.optim.Adam(SeqOpt_obj.SeqOpt_obj.parameters(), lr=SeqOpt_obj.lr)
model_obj_dict["{}:jobID={}".format(subject,jobID)]=SeqOpt_obj
# print("registerPoint start")
model_obj_dict["{}:jobID={}".format(subject,jobID)].registerPoint(input_next_points, norm_input_next_points, property_list, input_result_list)
# print("registerPoint finish")
print("[After] len(SeqOpt_obj._norm_space.res())", len(SeqOpt_obj._norm_space.res()))
print("[After] len(SeqOpt_obj._real_space.res())", len(SeqOpt_obj._real_space.res()))
sendData=model_obj_dict["{}:jobID={}".format(subject,jobID)]._real_space.res()
base_tcp_node_obj.checkSocketStatus(client_socket, sendData, module_name, action_type)
elif "res" == action_type:
recommended_recipe=ast.literal_eval(action_data)
subject=recommended_recipe["subject"]
res_SeqOpt_obj=model_obj_dict["{}:jobID={}".format(subject,jobID)]
print("len(SeqOpt_obj._norm_space.res())", len(res_SeqOpt_obj._norm_space.res()))
print("len(SeqOpt_obj._real_space.res())", len(res_SeqOpt_obj._real_space.res()))
sendData=res_SeqOpt_obj._real_space.res()
base_tcp_node_obj.checkSocketStatus(client_socket, sendData, module_name, action_type)
elif "output_space" == action_type:
subject, filename=action_data.split("&")
model_obj_dict["{}:jobID={}".format(subject,jobID)].output_space(filename) # generate csv file
sendData=model_obj_dict["{}:jobID={}".format(subject,jobID)]._norm_space.res()
# sendData="finish generation of outputs for normalized conditions".encode('utf-8')
base_tcp_node_obj.checkSocketStatus(client_socket, sendData, module_name, action_type)
elif "output_space_realCondition" == action_type:
subject, filename=action_data.split("&")
model_obj_dict["{}:jobID={}".format(subject,jobID)].output_space_realCondition(filename) # generate csv file
sendData=model_obj_dict["{}:jobID={}".format(subject,jobID)]._real_space.res()
# sendData="finish generation of outputs for real conditions".encode('utf-8')
base_tcp_node_obj.checkSocketStatus(client_socket, sendData, module_name, action_type)
elif "output_space_property" == action_type:
subject, filename=action_data.split("&")
model_obj_dict["{}:jobID={}".format(subject,jobID)].output_space_property(filename) # generate csv file
sendData=model_obj_dict["{}:jobID={}".format(subject,jobID)]._real_space.res()
# sendData="finish generation of outputs for propertys".encode('utf-8')
base_tcp_node_obj.checkSocketStatus(client_socket, sendData, module_name, action_type)
elif "saveModel" == action_type:
subject, filename=action_data.split("&")
model_obj_dict["{}:jobID={}".format(subject,jobID)].savedModel(filename) # generate model object
sendData="finish saving model".encode('utf-8')
base_tcp_node_obj.checkSocketStatus(client_socket, sendData, module_name, action_type)
elif "loadModel" == action_type:
subject, mode_type, dirname, pickle_name, algorithm_str=action_data.split("&")
filename="{}/{}/{}/{}/{}/{}".format("Data",subject,"Object",mode_type,dirname,pickle_name)
algorithm_dict=ast.literal_eval(algorithm_str)
SeqOpt_obj=NanoChef(algorithm_dict)
loaded_SeqOpt_obj=loadModel(filename)
SeqOpt_obj._norm_space.target=loaded_SeqOpt_obj._norm_space.target
SeqOpt_obj._norm_space.params=loaded_SeqOpt_obj._norm_space.params
SeqOpt_obj._norm_space.seqs=loaded_SeqOpt_obj._norm_space.seqs
SeqOpt_obj._norm_space.propertys=loaded_SeqOpt_obj._norm_space.propertys
SeqOpt_obj._real_space.target=loaded_SeqOpt_obj._real_space.target
SeqOpt_obj._real_space.params=loaded_SeqOpt_obj._real_space.params
SeqOpt_obj._real_space.seqs=loaded_SeqOpt_obj._real_space.seqs
SeqOpt_obj._real_space.propertys=loaded_SeqOpt_obj._real_space.propertys
SeqOpt_obj.best_loss_list=loaded_SeqOpt_obj.best_loss_list
SeqOpt_obj.best_mae_list=loaded_SeqOpt_obj.best_mae_list
SeqOpt_obj.best_y_list=loaded_SeqOpt_obj.best_y_list
SeqOpt_obj.SeqOpt_obj.nn_block.n_observation=len(SeqOpt_obj._norm_space.res())/len(SeqOpt_obj.reagent_seqs)*2
print("len(SeqOpt_obj._norm_space.res())", len(SeqOpt_obj._norm_space.res()))
print("len(SeqOpt_obj._real_space.res())", len(SeqOpt_obj._real_space.res()))
# print("SeqOpt_obj.SeqOpt_obj.nn_block.n_observation", SeqOpt_obj.SeqOpt_obj.nn_block.n_observation)
SeqOpt_obj.model_logger=ModelLogger(SeqOpt_obj.subject, SeqOpt_obj.logLevel, SeqOpt_obj.TOTAL_LOG_FOLDER)
SeqOpt_obj.optimizer = torch.optim.Adam(SeqOpt_obj.SeqOpt_obj.parameters(), lr=SeqOpt_obj.lr)
model_obj_dict["{}:jobID={}".format(subject,jobID)]=SeqOpt_obj
total_algorithm_dict["{}:jobID={}".format(algorithm_dict["subject"],jobID)]=algorithm_dict
SeqOpt_obj.model_logger.info("SeqOpt ({})".format("real_space"), "{}".format(SeqOpt_obj._real_space.res()))
SeqOpt_obj._training(search_epoch=int(len(SeqOpt_obj._norm_space.res())/SeqOpt_obj.batchSize))
sendData="finish loading model".encode('utf-8')
base_tcp_node_obj.checkSocketStatus(client_socket, sendData, module_name, action_type)
else:
sendData="Error commands : {}".format(data)
client_socket.sendall(sendData.encode("utf-8"))
server_logger.info("Master", "Error commands: {}".format(data))
server_logger.info("Master", "{}: {}".format(client_address, data))
except ConnectionAbortedError as e:
server_logger.info("Master", "{}: Connection was forcibly closed.".format(client_address))
def start_server():
SERVER_HOST='127.0.0.1' # permit from all interfaces
SERVER_PORT=4001 # if you want, can change
SERVER_ACCESS_NUM=100 # permit to accept the number of maximum client
server_socket = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
server_socket.setsockopt(socket.SOL_SOCKET, socket.SO_REUSEADDR, 20)
server_socket.setsockopt(socket.SOL_SOCKET, socket.SO_BROADCAST, 20)
server_socket.bind((SERVER_HOST, SERVER_PORT))
server_socket.listen(SERVER_ACCESS_NUM) # permit to accept
print("[SeqOpt] Server on at {}:{}.".format(SERVER_HOST, SERVER_PORT))
print("[SeqOpt] Waiting...")
while True:
# start Client handler thread (while loop, wait for client request)
client_socket, client_address = server_socket.accept()
client_thread = threading.Thread(target=handle_client, args=(client_socket, client_address, server_logger_obj))
client_thread.start()
start_server()