Don't change this yet, but the following argument name is confusing. It's an input path to a tsv of normalized kmer counts but is named norm-output.
|
parser.add_argument( |
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"--norm-output", |
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help=f"Path to normalized kmers table (will skip if file exists)", |
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metavar="filepath", |
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) |
The command's output file path is also named ...-output:
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parser.add_argument( |
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"--embedding-output", |
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help=f"Path to write embedded kmers table (will skip if file exists)", |
|
metavar="filepath", |
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) |
Don't change this yet, but the following argument name is confusing. It's an input path to a tsv of normalized kmer counts but is named
norm-output.Autometa/autometa/common/kmers.py
Lines 736 to 740 in baf61c0
The command's output file path is also named
...-output:Autometa/autometa/common/kmers.py
Lines 758 to 762 in baf61c0