diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml new file mode 100644 index 00000000..75412945 --- /dev/null +++ b/.github/workflows/ci.yml @@ -0,0 +1,162 @@ +name: CI + +on: + pull_request: + push: + +permissions: + contents: read + +env: + PYTHON_VERSION: "3.11" + CONTRACT_MODEL_BASELINE_TAG: "pipeline/is-contract/0.1" + CONTRACT_MODEL_CANDIDATE_TAG: "pipeline/is-contract/0.1" + CONTRACT_MODEL_BASELINE_METRICS: "test_data/model_quality/is_contract_baseline_metrics.json" + +jobs: + base-tests: + name: Base Tests + runs-on: ubuntu-latest + timeout-minutes: 60 + steps: + - name: Check out repository + uses: actions/checkout@v4 + + - name: Set up Python + uses: actions/setup-python@v5 + with: + python-version: ${{ env.PYTHON_VERSION }} + + - name: Set up uv + uses: astral-sh/setup-uv@v6 + + - name: Install dependencies + run: | + uv venv .venv --python "${PYTHON_VERSION}" + uv sync --frozen --python .venv/bin/python --extra dev --extra test + + - name: Bootstrap required assets + env: + GITHUB_TOKEN: ${{ github.token }} + run: .venv/bin/python scripts/bootstrap_assets.py --nltk --contract-model + + - name: Enforce skip-audit policy + run: .venv/bin/python ci/skip_audit.py + + - name: Run base suite + run: .venv/bin/pytest lexnlp + + stanford-tests: + name: Stanford Tests + runs-on: ubuntu-latest + timeout-minutes: 60 + steps: + - name: Check out repository + uses: actions/checkout@v4 + + - name: Set up Python + uses: actions/setup-python@v5 + with: + python-version: ${{ env.PYTHON_VERSION }} + + - name: Set up uv + uses: astral-sh/setup-uv@v6 + + - name: Set up Java + uses: actions/setup-java@v4 + with: + distribution: temurin + java-version: "11" + + - name: Install dependencies + run: | + uv venv .venv --python "${PYTHON_VERSION}" + uv sync --frozen --python .venv/bin/python --extra dev --extra test + + - name: Bootstrap required assets (including Stanford) + env: + GITHUB_TOKEN: ${{ github.token }} + run: .venv/bin/python scripts/bootstrap_assets.py --nltk --contract-model --stanford + + - name: Run Stanford suite + env: + LEXNLP_USE_STANFORD: "true" + run: | + .venv/bin/pytest \ + lexnlp/nlp/en/tests/test_stanford.py \ + lexnlp/extract/en/entities/tests/test_stanford_ner.py + + model-quality: + name: Model Quality Gate + runs-on: ubuntu-latest + timeout-minutes: 30 + steps: + - name: Check out repository + uses: actions/checkout@v4 + + - name: Set up Python + uses: actions/setup-python@v5 + with: + python-version: ${{ env.PYTHON_VERSION }} + + - name: Set up uv + uses: astral-sh/setup-uv@v6 + + - name: Install dependencies + run: | + uv venv .venv --python "${PYTHON_VERSION}" + uv sync --frozen --python .venv/bin/python --extra test + + - name: Bootstrap contract-model asset + env: + GITHUB_TOKEN: ${{ github.token }} + run: .venv/bin/python scripts/bootstrap_assets.py --nltk --contract-model + + - name: Run contract model quality gate + run: | + .venv/bin/python scripts/model_quality_gate.py \ + --baseline-tag "${CONTRACT_MODEL_BASELINE_TAG}" \ + --candidate-tag "${CONTRACT_MODEL_CANDIDATE_TAG}" \ + --baseline-metrics-json "${CONTRACT_MODEL_BASELINE_METRICS}" \ + --output-json artifacts/model_quality_gate.json \ + --max-f1-regression 0.0 \ + --max-accuracy-regression 0.0 + + - name: Upload quality-gate result + uses: actions/upload-artifact@v4 + with: + name: model-quality-gate + path: artifacts/model_quality_gate.json + if-no-files-found: error + + packaging-smoke: + name: Packaging Smoke + runs-on: ubuntu-latest + timeout-minutes: 30 + steps: + - name: Check out repository + uses: actions/checkout@v4 + + - name: Set up Python + uses: actions/setup-python@v5 + with: + python-version: ${{ env.PYTHON_VERSION }} + + - name: Set up uv + uses: astral-sh/setup-uv@v6 + + - name: Build source and wheel artifacts + run: | + uv build + + - name: Validate artifact contents + run: python3 ci/check_dist_contents.py + + - name: Install wheel in clean env + run: | + uv venv .venv-smoke --python "${PYTHON_VERSION}" + uv pip install --python .venv-smoke/bin/python dist/*.whl + .venv-smoke/bin/python - <<'PY' + import lexnlp + print(getattr(lexnlp, "__version__", "unknown")) + PY diff --git a/.gitignore b/.gitignore index 3a21bea2..1907c67d 100644 --- a/.gitignore +++ b/.gitignore @@ -110,7 +110,8 @@ ENV/ # mypy .mypy_cache/ +artifacts/ + benchmarks lexnlp/extract/en/contracts/data/*.model /.pytest_cache/ - diff --git a/AGENTS.md b/AGENTS.md new file mode 100644 index 00000000..b3d0167c --- /dev/null +++ b/AGENTS.md @@ -0,0 +1,180 @@ +# AGENTS.md + +This document is a quick-start guide for coding agents working in this repository. + +## Project Summary + +- Project: `lexpredict-lexnlp` (LexNLP) +- Purpose: legal-text NLP and information extraction library +- Primary package: `lexnlp/` +- Packaging: `pyproject.toml` (setuptools backend; version in repo: `2.3.0`) +- Python requirement in `pyproject.toml`: `>=3.10,<3.13` (default to Python `3.11`) + +## Directory Structure + +```text +. +|-- lexnlp/ # Main package +| |-- config/ # Locale-specific configuration (en, de, es) +| |-- extract/ # Extraction modules by locale and domain +| | |-- common/ +| | |-- en/ +| | |-- de/ +| | |-- es/ +| | `-- ml/ +| |-- ml/ # ML utilities/catalog helpers +| |-- nlp/ # NLP components and training helpers +| |-- tests/ # Shared test helpers + tests +| `-- utils/ # Utility modules and utility tests +|-- test_data/ # Fixtures, sample inputs, expected outputs +|-- scripts/ # Helper scripts (Tika, release, data helpers) +|-- libs/ # Download/runtime helper scripts and assets +|-- notebooks/ # Exploratory notebooks by topic +|-- documentation/ # Sphinx docs source +|-- pyproject.toml # Canonical packaging/dependency metadata +|-- python-requirements.txt # Deprecated legacy dependency snapshot +|-- python-requirements-dev.txt # Deprecated legacy dev/test snapshot +|-- Pipfile # Deprecated legacy pipenv workflow +|-- .pylintrc # Lint configuration +|-- .travis.yml # Historical CI reference +|-- setup.py # Legacy compatibility wrapper +`-- AGENTS.md +``` + +## Environment Setup (Recommended: uv) + +Use Python 3.11 in a local `.venv`. + +```bash +cd /Users/jackeames/Downloads/LexNLP +uv python install 3.11 +uv venv --python 3.11 .venv +uv pip install --python .venv/bin/python -e ".[dev,test]" +``` + +### Deprecated setup variants + +`Pipfile`, `python-requirements.txt`, and `python-requirements-dev.txt` are deprecated. Use `uv` with `pyproject.toml` for all new local setup and CI updates. + +## Required Runtime/Test Assets + +Use the bootstrap script for deterministic setup: + +```bash +./.venv/bin/python scripts/bootstrap_assets.py --nltk --contract-model +``` + +Optional assets: + +```bash +# Stanford +./.venv/bin/python scripts/bootstrap_assets.py --stanford + +# Tika +./.venv/bin/python scripts/bootstrap_assets.py --tika +``` + +## Stanford-Dependent Tests + +Stanford tests are gated by `LEXNLP_USE_STANFORD=true`. + +1. Install Java: +```bash +brew install openjdk +``` + +2. Ensure Java is on path for test commands: +```bash +export PATH="/opt/homebrew/opt/openjdk/bin:$PATH" +``` + +3. Download Stanford assets to `libs/stanford_nlp`: +- `stanford-postagger-full-2017-06-09` +- `stanford-ner-2017-06-09` + +Expected files: +- `libs/stanford_nlp/stanford-postagger-full-2017-06-09/stanford-postagger.jar` +- `libs/stanford_nlp/stanford-postagger-full-2017-06-09/models/english-bidirectional-distsim.tagger` +- `libs/stanford_nlp/stanford-ner-2017-06-09/stanford-ner.jar` +- `libs/stanford_nlp/stanford-ner-2017-06-09/classifiers/english.all.3class.distsim.crf.ser.gz` + +## Tika Notes + +`scripts/download_tika.sh` can fail on macOS because it assumes GNU `mkdir --parents` and `wget`. +If needed, manually download `tika-app-1.16.jar` and `tika-server-1.16.jar` into `bin/` using `curl`. + +Migration and troubleshooting details are in `MIGRATION_RUNBOOK.md`. + +## Test Integrity Policy + +- Do not add, remove, or modify `skip`, `skipif`, or `xfail` markers to bypass failures. +- Fix failing behavior or document a real external blocker; never mask regressions by changing skip behavior. +- Validation target is **100% pass** for required suites. + +## Full Validation Commands (100% pass target) + +Run in two phases: + +1. Base suite: +```bash +./.venv/bin/pytest lexnlp +``` + +2. Stanford-only suite: +```bash +PATH=/opt/homebrew/opt/openjdk/bin:$PATH \ +LEXNLP_USE_STANFORD=true \ +./.venv/bin/pytest \ + lexnlp/nlp/en/tests/test_stanford.py \ + lexnlp/extract/en/entities/tests/test_stanford_ner.py +``` + +When Stanford assets are installed and enabled, both phases must pass (0 failures) for a **100% pass** result. + +Note: a single monolithic `LEXNLP_USE_STANFORD=true` run can occasionally hang in non-Stanford modules on this machine, so prefer the two-phase approach. + +## Common Commands + +```bash +# quick dependency sanity +./.venv/bin/pip check + +# packaging content sanity +python3 ci/check_dist_contents.py + +# contract model quality gate (baseline metrics) +./.venv/bin/python scripts/model_quality_gate.py \ + --baseline-tag pipeline/is-contract/0.1 \ + --candidate-tag pipeline/is-contract/0.1 \ + --baseline-metrics-json test_data/model_quality/is_contract_baseline_metrics.json + +# create a re-exported candidate model tag and validate it +./.venv/bin/python scripts/reexport_contract_model.py \ + --source-tag pipeline/is-contract/0.1 \ + --target-tag pipeline/is-contract/0.2 \ + --baseline-metrics-json test_data/model_quality/is_contract_baseline_metrics.json + +# run one file +./.venv/bin/pytest lexnlp/extract/en/tests/test_dates.py + +# historical CI-style command +./.venv/bin/pytest --cov lexnlp --pylint --pylint-rcfile=.pylintrc lexnlp +``` + +## Implementation Guidelines + +- Keep changes scoped to the relevant locale/module (`extract/en`, `extract/de`, etc.). +- Add or update tests alongside behavior changes. +- Prefer existing utilities under `lexnlp/utils/` over introducing duplicates. +- When adding extraction patterns/models, include representative fixtures in `test_data/`. +- Avoid committing downloaded/generated third-party assets unless explicitly required. + +## Pull Request Checklist + +- Editable install works: `uv pip install --python .venv/bin/python -e ".[dev,test]"` +- Targeted tests for changed modules pass. +- Full base run (`pytest lexnlp`) passes. +- If Stanford assets are enabled, Stanford-only suite with `LEXNLP_USE_STANFORD=true` passes. +- Contract model quality gate passes against `test_data/model_quality/is_contract_baseline_metrics.json`. +- No `skip`/`skipif`/`xfail` policy bypasses were introduced. +- Document any required asset downloads (NLTK, pipeline models, Stanford, Tika) in PR notes. diff --git a/DEPENDENCY_MODERNIZATION_PLAN.md b/DEPENDENCY_MODERNIZATION_PLAN.md new file mode 100644 index 00000000..022c14eb --- /dev/null +++ b/DEPENDENCY_MODERNIZATION_PLAN.md @@ -0,0 +1,59 @@ +# Dependency Modernization With Zero-Skip Test Policy + +## Summary + +- Treat `AGENTS.md` as policy-enforcing documentation for engineering agents. +- Make dependency management current (`uv` + single source of truth). +- Keep behavior stable while upgrading packages and model artifacts. +- Require all collected tests to pass with fully provisioned dependencies. + +## Scope + +### In + +- Add explicit “do not skip/disable tests” policy to `AGENTS.md`. +- Consolidate dependency definitions into one modern packaging workflow. +- Make full test execution deterministic, including currently optional integrations. +- Introduce a controlled model-improvement pipeline with measurable acceptance gates. + +### Out + +- Feature-level extraction redesign unrelated to dependency/model reliability. +- Permanent acceptance of partial-pass builds. + +## Action Items + +- [ ] Add a **Test Integrity Policy** section to `AGENTS.md` that forbids adding/removing `skip`, `skipif`, or `xfail` to bypass failures, and requires fixing root causes instead. +- [ ] Define a **100% pass target** as: all collected tests pass on a fully provisioned runner, including Stanford-gated tests when required assets are present. +- [ ] Add a **skip-audit check** in CI that fails if new skip/xfail markers are introduced without an approved issue link and expiry date. +- [ ] Consolidate packaging to `pyproject.toml` + lockfile and deprecate conflicting manifests (`Pipfile`, split requirements variants) after parity is captured. +- [ ] Standardize runtime on modern Python (default 3.11) and align metadata/docs/CI to that policy. +- [ ] Replace brittle setup scripts with deterministic bootstrap steps for NLTK corpora, contract pipeline artifacts, Java/Stanford assets, and optional Tika. +- [ ] Run compatibility validation for serialized ML pipelines against upgraded `scikit-learn`; retrain/re-export artifacts when incompatible, with explicit version tags. +- [ ] Add a model quality gate: compare old vs new models on fixed evaluation fixtures and accept upgrades only when metrics improve or regressions are within strict tolerance. +- [ ] Publish a migration runbook in repo docs with exact commands for local setup, full test run, optional component enablement, and failure triage. +- [ ] Roll out in staged PRs (policy/doc first, packaging second, CI third, model upgrades fourth), each required to stay green end-to-end. + +## Important Changes to Interfaces + +- Installation interface becomes `uv` + `pyproject.toml` driven. +- Dependency groups become explicit extras (`dev`, `test`, `stanford`, `tika`). +- Model artifact interface becomes versioned and benchmark-gated (new tags for improved models). +- No intended changes to user-facing extraction function signatures during dependency modernization. + +## Test Scenarios + +- Fresh environment bootstrap succeeds with documented commands only. +- Base suite passes with zero unexpected skips/failures. +- Stanford suite passes when provisioned and enabled. +- CI skip-audit catches any new bypass markers. +- Model regression suite compares baseline vs upgraded outputs and blocks degradations. +- Built wheel installs in clean venv and passes smoke tests. + +## Assumptions and Defaults + +- Default judgment: this should be done now. +- Default policy: no test disabling for convenience; failures are fixed, not hidden. +- Default Python target: 3.11 (with compatibility checks for adjacent supported versions). +- Default model policy: prefer newer models/methods only when measured outputs are better. +- Default blocker handling: if an external dependency outage prevents completion, build is marked blocked/failing with explicit root-cause notes, not treated as pass. diff --git a/MANIFEST.in b/MANIFEST.in index 983e9b3e..7d3aa75c 100644 --- a/MANIFEST.in +++ b/MANIFEST.in @@ -1,11 +1,18 @@ include README.md include README.rst include index.rst -include Pipfile -include Pipfile.lock +exclude Pipfile +exclude Pipfile.lock +exclude python-requirements.txt +exclude python-requirements-dev.txt +exclude python-requirements-full.txt recursive-include lexnlp *.pickle recursive-include lexnlp/extract/en/addresses *.json *.txt *.xml recursive-include lexnlp *.csv -recursive-include libs * -recursive-include scripts * +include libs/download_stanford_nlp.sh +include libs/download_wiki.sh +recursive-include scripts *.py *.sh recursive-include documentation * +prune libs/stanford_nlp +global-exclude __pycache__ +global-exclude *.py[cod] diff --git a/MIGRATION_RUNBOOK.md b/MIGRATION_RUNBOOK.md new file mode 100644 index 00000000..2784aebd --- /dev/null +++ b/MIGRATION_RUNBOOK.md @@ -0,0 +1,143 @@ +# Dependency Migration Runbook + +This runbook is the operational guide for maintaining a modern, reproducible LexNLP environment with a zero-skip testing policy. + +## 1) Toolchain Baseline + +- Python: `3.11` (default), supported range in `pyproject.toml`: `>=3.10,<3.13` +- Packaging/dependencies: `pyproject.toml` + `uv.lock` +- Installer/runner: `uv` + +Legacy files are retained for historical reproduction only: +- `Pipfile` +- `python-requirements.txt` +- `python-requirements-dev.txt` +- `python-requirements-full.txt` + +## 2) Fresh Setup + +```bash +cd /Users/jackeames/Downloads/LexNLP +uv python install 3.11 +uv venv --python 3.11 .venv +uv pip install --python .venv/bin/python -e ".[dev,test]" +``` + +## 3) Bootstrap Required Assets + +```bash +# NLTK + required model artifact +./.venv/bin/python scripts/bootstrap_assets.py --nltk --contract-model + +# Optional: Stanford assets for Stanford-gated tests +./.venv/bin/python scripts/bootstrap_assets.py --stanford + +# Optional: Tika jars +./.venv/bin/python scripts/bootstrap_assets.py --tika +``` + +## 4) Policy Checks + +```bash +# Fail if unapproved skip/skipif/xfail markers were added +./.venv/bin/python ci/skip_audit.py +``` + +## 5) Full Validation (100% pass target) + +```bash +# Base suite +./.venv/bin/pytest lexnlp + +# Stanford-only suite (requires Stanford assets + Java) +PATH=/opt/homebrew/opt/openjdk/bin:$PATH \ +LEXNLP_USE_STANFORD=true \ +./.venv/bin/pytest \ + lexnlp/nlp/en/tests/test_stanford.py \ + lexnlp/extract/en/entities/tests/test_stanford_ner.py +``` + +Passing both commands is the required 100% result for a fully provisioned environment. + +## 6) Packaging Validation + +```bash +uv build +python3 ci/check_dist_contents.py +uv venv --python 3.11 .venv-smoke +uv pip install --python .venv-smoke/bin/python dist/*.whl +.venv-smoke/bin/python -c "import lexnlp; print(lexnlp.__version__)" +``` + +## 7) Model Upgrade Quality Gate + +Use the quality gate script before adopting a new contract-model artifact. + +The committed baseline metrics file is: +- `test_data/model_quality/is_contract_baseline_metrics.json` + +To create a modern candidate artifact by re-serializing the baseline model +under the current runtime (Python/scikit-learn), use: + +```bash +./.venv/bin/python scripts/reexport_contract_model.py \ + --source-tag pipeline/is-contract/0.1 \ + --target-tag pipeline/is-contract/0.2 \ + --baseline-metrics-json test_data/model_quality/is_contract_baseline_metrics.json +``` + +This writes model-export metadata to +`artifacts/model_reexports/pipeline__is-contract__0.2.metadata.json` by default. + +Candidate evaluation command: + +```bash +./.venv/bin/python scripts/model_quality_gate.py \ + --baseline-tag pipeline/is-contract/0.1 \ + --candidate-tag pipeline/is-contract/0.2 \ + --baseline-metrics-json test_data/model_quality/is_contract_baseline_metrics.json \ + --fixture test_data/lexnlp/extract/en/contracts/tests/test_contracts/test_is_contract.csv \ + --max-f1-regression 0.0 \ + --max-accuracy-regression 0.0 +``` + +Default policy is non-regression against baseline metrics from +`pipeline/is-contract/0.1` on the fixed fixture above. + +If baseline-tag model behavior is intentionally changed, regenerate and review +the baseline metrics file in the same PR: + +```bash +./.venv/bin/python scripts/model_quality_gate.py \ + --baseline-tag pipeline/is-contract/0.1 \ + --candidate-tag pipeline/is-contract/0.1 \ + --fixture test_data/lexnlp/extract/en/contracts/tests/test_contracts/test_is_contract.csv \ + --write-baseline-metrics-json test_data/model_quality/is_contract_baseline_metrics.json +``` + +### Refresh bundled sklearn artifacts + +If bundled sklearn artifacts emit legacy-version warnings, re-serialize them on +the current runtime and re-run targeted tests. Example for date parser model: + +```bash +./.venv/bin/python - <<'PY' +import joblib +joblib.dump(joblib.load("lexnlp/extract/en/date_model.pickle"), "lexnlp/extract/en/date_model.pickle", compress=3) +PY +``` + +## 8) Failure Triage + +- `LookupError` for NLTK resources: + - Re-run `scripts/bootstrap_assets.py --nltk` +- Contract tests failing with missing model tag: + - Re-run `scripts/bootstrap_assets.py --contract-model` +- Stanford tests failing due missing jars/models: + - Re-run `scripts/bootstrap_assets.py --stanford` +- Skip-audit failure: + - Remove the marker, or add annotation: + - `# skip-audit: issue= expires=YYYY-MM-DD` + - For approved legacy skips only, update `ci/skip_audit_allowlist.txt` +- Packaging smoke failure: + - Ensure build artifacts are generated with `uv build` and install into a clean venv diff --git a/Pipfile b/Pipfile index 31e08076..bce5e800 100644 --- a/Pipfile +++ b/Pipfile @@ -1,3 +1,6 @@ +# DEPRECATED: Legacy pipenv manifest retained only for historical reproduction. +# Use pyproject.toml + uv.lock for all active development and CI workflows. + [[source]] url = "https://pypi.org/simple" verify_ssl = true diff --git a/README.md b/README.md index 32b20fb6..29c54961 100755 --- a/README.md +++ b/README.md @@ -42,8 +42,40 @@ evaluation license by contacting ContraxSuite Licensing at <>. ## Requirements -* Python 3.8 -* pipenv +* Python 3.11 (default; supported range is defined in `pyproject.toml`) +* `uv` + +## Quick Setup (uv + pyproject) +```bash +cd /Users/jackeames/Downloads/LexNLP +uv python install 3.11 +uv venv --python 3.11 .venv +uv pip install --python .venv/bin/python -e ".[dev,test]" +./.venv/bin/python scripts/bootstrap_assets.py --nltk --contract-model +``` + +## Deprecated Setup Variants +`Pipfile`, `python-requirements.txt`, and `python-requirements-dev.txt` are deprecated and kept only for legacy reproduction. New development and CI updates should use `uv` with `pyproject.toml`. + +## Migration Runbook +See `MIGRATION_RUNBOOK.md` for complete migration/triage/quality-gate procedures. + +## Test Integrity and Full Validation +- Do not add/remove/modify `skip`, `skipif`, or `xfail` markers to bypass failing tests. +- Target is **100% pass**. +- If Stanford assets are enabled, 100% pass includes both base and Stanford-only suites. + +```bash +# Base suite +./.venv/bin/pytest lexnlp + +# Stanford-only suite (run when Stanford assets are installed) +PATH=/opt/homebrew/opt/openjdk/bin:$PATH \ +LEXNLP_USE_STANFORD=true \ +./.venv/bin/pytest \ + lexnlp/nlp/en/tests/test_stanford.py \ + lexnlp/extract/en/entities/tests/test_stanford_ner.py +``` ## Releases * 2.3.0: November 30, 2022 - Twenty sixth scheduled public release; [code](https://github.com/LexPredict/lexpredict-lexnlp/tree/2.3.0) diff --git a/README.rst b/README.rst index 4d12bbd9..b8fa1d0f 100644 --- a/README.rst +++ b/README.rst @@ -75,8 +75,27 @@ terms or a non-GPL evaluation license by contacting ContraxSuite Licensing at Requirements ------------ -- Python 3.8 -- pipenv +- Python 3.11 (default; supported range is defined in ``pyproject.toml``) +- ``uv`` + +Quick Setup (uv + pyproject) +---------------------------- + +.. code:: bash + + cd /Users/jackeames/Downloads/LexNLP + uv python install 3.11 + uv venv --python 3.11 .venv + uv pip install --python .venv/bin/python -e ".[dev,test]" + ./.venv/bin/python scripts/bootstrap_assets.py --nltk --contract-model + +Deprecated Setup Variants +------------------------- + +``Pipfile``, ``python-requirements.txt``, ``python-requirements-dev.txt``, +and ``python-requirements-full.txt`` are deprecated and kept only for +legacy reproduction. New development and CI updates should use ``uv`` with +``pyproject.toml``. Releases -------- diff --git a/ci/check_dist_contents.py b/ci/check_dist_contents.py new file mode 100644 index 00000000..a8096f24 --- /dev/null +++ b/ci/check_dist_contents.py @@ -0,0 +1,94 @@ +#!/usr/bin/env python3 +"""Validate built distribution contents.""" + +from __future__ import annotations + +import sys +import tarfile +import zipfile +from pathlib import Path +from typing import Iterable, List + +BANNED_SUBSTRINGS = ( + "libs/stanford_nlp/", + "scripts/__pycache__/", +) + +BANNED_BASENAMES = ( + "Pipfile", + "Pipfile.lock", + "python-requirements.txt", + "python-requirements-dev.txt", + "python-requirements-full.txt", +) + +BANNED_SUFFIXES = ( + ".pyc", + ".pyo", +) + + +def iter_tar_names(path: Path) -> Iterable[str]: + with tarfile.open(path, "r:*") as archive: + for member in archive.getmembers(): + if member.isfile(): + yield member.name + + +def iter_zip_names(path: Path) -> Iterable[str]: + with zipfile.ZipFile(path) as archive: + for name in archive.namelist(): + if not name.endswith("/"): + yield name + + +def find_violations(names: Iterable[str]) -> List[str]: + violations: List[str] = [] + for name in names: + normalized = name.replace("\\", "/") + if any(token in normalized for token in BANNED_SUBSTRINGS): + violations.append(normalized) + continue + if normalized.rsplit("/", 1)[-1] in BANNED_BASENAMES: + violations.append(normalized) + continue + if normalized.endswith(BANNED_SUFFIXES): + violations.append(normalized) + return violations + + +def main(argv: list[str]) -> int: + dist_dir = Path(argv[0]) if argv else Path("dist") + if not dist_dir.exists(): + print(f"dist-check: missing dist directory: {dist_dir}", file=sys.stderr) + return 1 + + artifacts = sorted( + [*dist_dir.glob("*.whl"), *dist_dir.glob("*.tar.gz")] + ) + if not artifacts: + print(f"dist-check: no build artifacts found under {dist_dir}", file=sys.stderr) + return 1 + + failures: List[str] = [] + for artifact in artifacts: + if artifact.suffix == ".whl": + names = iter_zip_names(artifact) + else: + names = iter_tar_names(artifact) + violations = find_violations(names) + for violation in violations: + failures.append(f"{artifact.name}: {violation}") + + if failures: + print("dist-check: forbidden files found in artifacts", file=sys.stderr) + for failure in failures: + print(f" - {failure}", file=sys.stderr) + return 1 + + print("dist-check: OK") + return 0 + + +if __name__ == "__main__": + raise SystemExit(main(sys.argv[1:])) diff --git a/ci/skip_audit.py b/ci/skip_audit.py new file mode 100644 index 00000000..d54df0ab --- /dev/null +++ b/ci/skip_audit.py @@ -0,0 +1,257 @@ +#!/usr/bin/env python3 +"""Audit pytest skip markers. + +Policy: +- New pytest skip markers must include a nearby annotation: + `skip-audit: issue=... expires=YYYY-MM-DD` +- Existing markers can be grandfathered via an allowlist file. +""" + +from __future__ import annotations + +import argparse +import ast +import datetime as dt +import re +import subprocess +import sys +import warnings +from dataclasses import dataclass +from pathlib import Path +from typing import Dict, List, Optional, Sequence, Set, Tuple + +ANNOTATION_RE = re.compile( + r"skip-audit:\s*issue=(?P\S+)\s+expires=(?P\d{4}-\d{2}-\d{2})" +) +MARKER_NAMES = {"skip", "skipif", "xfail"} +LOOKBACK_LINES = 2 + + +@dataclass(frozen=True) +class Marker: + path: Path + line: int + col: int + kind: str + expression: str + + @property + def key(self) -> str: + return f"{self.path.as_posix()}:{self.line}:{self.kind}" + + +def parse_args(argv: Sequence[str]) -> argparse.Namespace: + parser = argparse.ArgumentParser( + description="Fail if unapproved pytest skip markers are present." + ) + script_path = Path(__file__).resolve() + default_repo_root = script_path.parent.parent + parser.add_argument( + "--repo-root", + default=str(default_repo_root), + help="Repository root path (default: %(default)s)", + ) + parser.add_argument( + "--allowlist", + default="ci/skip_audit_allowlist.txt", + help="Allowlist path (relative to repo root unless absolute).", + ) + return parser.parse_args(argv) + + +def marker_kind(node: ast.AST) -> Optional[str]: + if not isinstance(node, ast.Attribute): + return None + if node.attr not in MARKER_NAMES: + return None + mark_parent = node.value + if ( + isinstance(mark_parent, ast.Attribute) + and mark_parent.attr == "mark" + and isinstance(mark_parent.value, ast.Name) + and mark_parent.value.id == "pytest" + ): + return node.attr + return None + + +def list_python_files(repo_root: Path) -> List[Path]: + try: + result = subprocess.run( + ["git", "ls-files", "*.py"], + cwd=repo_root, + check=True, + capture_output=True, + text=True, + ) + except (FileNotFoundError, subprocess.CalledProcessError): + return sorted(path for path in repo_root.rglob("*.py") if ".git" not in path.parts) + + files = [] + for line in result.stdout.splitlines(): + relative_path = line.strip() + if not relative_path: + continue + files.append(repo_root / relative_path) + return sorted(files) + + +def collect_markers(repo_root: Path) -> Tuple[List[Marker], List[str]]: + markers: List[Marker] = [] + parse_errors: List[str] = [] + + for file_path in list_python_files(repo_root): + relative_path = file_path.relative_to(repo_root) + try: + source = file_path.read_text(encoding="utf-8") + except UnicodeDecodeError as exc: + parse_errors.append( + f"{relative_path.as_posix()}: failed to decode as UTF-8 ({exc})" + ) + continue + + try: + with warnings.catch_warnings(): + # Older files can emit parser-level invalid escape warnings; + # they are unrelated to skip marker policy and should not fail the audit. + warnings.simplefilter("ignore", SyntaxWarning) + tree = ast.parse(source, filename=str(relative_path)) + except SyntaxError as exc: + parse_errors.append( + f"{relative_path.as_posix()}:{exc.lineno}: syntax error while parsing ({exc.msg})" + ) + continue + + parents: Dict[int, ast.AST] = {} + for parent in ast.walk(tree): + for child in ast.iter_child_nodes(parent): + parents[id(child)] = parent + + seen: Set[Tuple[int, int, str]] = set() + for node in ast.walk(tree): + kind: Optional[str] = None + if isinstance(node, ast.Call): + kind = marker_kind(node.func) + elif isinstance(node, ast.Attribute): + kind = marker_kind(node) + parent = parents.get(id(node)) + if isinstance(parent, ast.Call) and parent.func is node: + kind = None + + if kind is None: + continue + + key = (node.lineno, node.col_offset, kind) + if key in seen: + continue + seen.add(key) + + expression = ast.get_source_segment(source, node) or kind + markers.append( + Marker( + path=relative_path, + line=node.lineno, + col=node.col_offset, + kind=kind, + expression=" ".join(expression.split()), + ) + ) + + markers.sort(key=lambda marker: (marker.path.as_posix(), marker.line, marker.col)) + return markers, parse_errors + + +def load_allowlist(allowlist_path: Path) -> Set[str]: + if not allowlist_path.exists(): + return set() + entries: Set[str] = set() + for raw_line in allowlist_path.read_text(encoding="utf-8").splitlines(): + line = raw_line.strip() + if not line or line.startswith("#"): + continue + entries.add(line) + return entries + + +def find_annotation(lines: Sequence[str], marker_line: int) -> Optional[re.Match[str]]: + start = max(1, marker_line - LOOKBACK_LINES) + for line_number in range(marker_line, start - 1, -1): + line = lines[line_number - 1] + match = ANNOTATION_RE.search(line) + if match: + return match + return None + + +def main(argv: Sequence[str]) -> int: + args = parse_args(argv) + repo_root = Path(args.repo_root).resolve() + allowlist_path = Path(args.allowlist) + if not allowlist_path.is_absolute(): + allowlist_path = (repo_root / allowlist_path).resolve() + + allowlist = load_allowlist(allowlist_path) + markers, parse_errors = collect_markers(repo_root) + + if parse_errors: + print("skip-audit: parse errors detected", file=sys.stderr) + for parse_error in parse_errors: + print(f" - {parse_error}", file=sys.stderr) + return 1 + + files_cache: Dict[Path, List[str]] = {} + today = dt.date.today() + violations: List[str] = [] + allowlisted_count = 0 + + for marker in markers: + if marker.key in allowlist: + allowlisted_count += 1 + continue + + lines = files_cache.setdefault( + marker.path, (repo_root / marker.path).read_text(encoding="utf-8").splitlines() + ) + annotation_match = find_annotation(lines, marker.line) + display_id = f"{marker.path.as_posix()}:{marker.line}:{marker.kind}" + if annotation_match is None: + violations.append( + f"{display_id} missing annotation `skip-audit: issue=... expires=YYYY-MM-DD`" + ) + continue + + expires_raw = annotation_match.group("expires") + try: + expires_date = dt.date.fromisoformat(expires_raw) + except ValueError: + violations.append(f"{display_id} has invalid expires date: {expires_raw}") + continue + + if expires_date < today: + violations.append( + f"{display_id} has expired annotation (expires={expires_raw}, today={today.isoformat()})" + ) + + if violations: + print("skip-audit: policy violations found", file=sys.stderr) + for violation in violations: + print(f" - {violation}", file=sys.stderr) + print( + ( + "skip-audit: either add a valid annotation near each marker or update " + f"{allowlist_path.relative_to(repo_root).as_posix()} for approved legacy markers." + ), + file=sys.stderr, + ) + return 1 + + print( + "skip-audit: OK " + f"(markers={len(markers)}, allowlisted={allowlisted_count}, " + f"annotated_new={len(markers) - allowlisted_count})" + ) + return 0 + + +if __name__ == "__main__": + raise SystemExit(main(sys.argv[1:])) diff --git a/ci/skip_audit_allowlist.txt b/ci/skip_audit_allowlist.txt new file mode 100644 index 00000000..b199435b --- /dev/null +++ b/ci/skip_audit_allowlist.txt @@ -0,0 +1,13 @@ +# Grandfathered Stanford skip markers. +# Format: path:line:marker +lexnlp/extract/en/entities/tests/test_stanford_ner.py:27:skipif +lexnlp/extract/en/entities/tests/test_stanford_ner.py:35:skipif +lexnlp/extract/en/entities/tests/test_stanford_ner.py:43:skipif +lexnlp/nlp/en/tests/test_stanford.py:37:skipif +lexnlp/nlp/en/tests/test_stanford.py:44:skipif +lexnlp/nlp/en/tests/test_stanford.py:51:skipif +lexnlp/nlp/en/tests/test_stanford.py:58:skipif +lexnlp/nlp/en/tests/test_stanford.py:65:skipif +lexnlp/nlp/en/tests/test_stanford.py:72:skipif +lexnlp/nlp/en/tests/test_stanford.py:79:skipif +lexnlp/nlp/en/tests/test_stanford.py:86:skipif diff --git a/lexnlp/extract/en/date_model.pickle b/lexnlp/extract/en/date_model.pickle index 47b941a0..c2ee81a8 100644 Binary files a/lexnlp/extract/en/date_model.pickle and b/lexnlp/extract/en/date_model.pickle differ diff --git a/lexnlp/extract/es/regulations.py b/lexnlp/extract/es/regulations.py index e6efa3a5..e0e223c7 100644 --- a/lexnlp/extract/es/regulations.py +++ b/lexnlp/extract/es/regulations.py @@ -52,7 +52,20 @@ def load_trigger_words(self) -> None: dtypes = {'trigger': str, 'position': str} if not self.regulations_dataframe: path = os.path.join(lexnlp_base_path, 'lexnlp/config/es/es_regulations.csv') - self.regulations_dataframe = read_csv(path, encoding='utf-8', error_bad_lines=False, converters=dtypes) + try: + # pandas >= 1.3 + self.regulations_dataframe = read_csv( + path, + encoding='utf-8', + on_bad_lines='skip', + converters=dtypes) + except TypeError: + # pandas < 1.3 + self.regulations_dataframe = read_csv( + path, + encoding='utf-8', + error_bad_lines=False, + converters=dtypes) subset = self.regulations_dataframe[['trigger', 'position']] tuples = [tuple(x) for x in subset.values] self.start_triggers = [t[0] for t in tuples if t[1] == 'start'] diff --git a/lexnlp/ml/catalog/download.py b/lexnlp/ml/catalog/download.py index ab81e5be..cc2733ed 100644 --- a/lexnlp/ml/catalog/download.py +++ b/lexnlp/ml/catalog/download.py @@ -11,6 +11,7 @@ # standard library import logging +import os from pathlib import Path from hashlib import md5 from base64 import b64encode @@ -38,6 +39,17 @@ class ChecksumError(Exception): pass +def _build_github_headers(headers: Dict[str, str]) -> Dict[str, str]: + """ + Augment request headers with an optional GitHub token for higher API limits. + """ + token: str = (os.getenv("GITHUB_TOKEN") or os.getenv("GH_TOKEN") or "").strip() + merged_headers: Dict[str, str] = dict(headers) + if token: + merged_headers["Authorization"] = f"Bearer {token}" + return merged_headers + + class GitHubReleaseDownloader: """ """ @@ -53,9 +65,9 @@ def download_release(cls, tag: str): def get_tag(tag: str) -> Response: response: Response = get( url=f'{MODELS_REPO}{tag}', - headers={ + headers=_build_github_headers({ 'Accept': 'application/vnd.github.v3+json', - }, + }), ) return response @@ -122,9 +134,9 @@ def download_asset( response: Response = get( url=asset['url'], stream=True, - headers={ + headers=_build_github_headers({ 'Accept': 'application/octet-stream', - }, + }), ) headers: CaseInsensitiveDict[str, Any] = response.headers name: str = asset.get('name') diff --git a/lexnlp/ml/predictor.py b/lexnlp/ml/predictor.py index 066214ae..40778188 100644 --- a/lexnlp/ml/predictor.py +++ b/lexnlp/ml/predictor.py @@ -84,12 +84,32 @@ def __init__(self, pipeline: Optional[Pipeline] = None) -> None: f'does not follow the `ScikitLearnHasPredictProba` protocol.' ) + self._patch_legacy_estimator_attributes() + # Fix AttributeError: 'MinMaxScaler' object has no attribute 'clip' for _, name, transform in self.pipeline._iter(with_final=False): transform.clip = hasattr(transform, 'clip') and transform.clip self._sanity_check() + def _patch_legacy_estimator_attributes(self) -> None: + """ + Patch known attribute-renames for old serialized Scikit-Learn estimators. + + LexNLP bundles model artifacts trained on older Scikit-Learn versions. + Newer runtimes may rename fitted attributes and break inference unless + we provide compatible aliases. + """ + estimator = self.pipeline._final_estimator + + # sklearn.naive_bayes.GaussianNB previously persisted `sigma_` and now + # expects `var_`/`variance_` in prediction paths. + if hasattr(estimator, "sigma_"): + if not hasattr(estimator, "var_"): + estimator.var_ = estimator.sigma_ + if not hasattr(estimator, "variance_"): + estimator.variance_ = estimator.var_ + @abstractmethod def _sanity_check(self) -> None: """ diff --git a/lexnlp/nlp/en/segments/paragraphs.py b/lexnlp/nlp/en/segments/paragraphs.py index 839c76ff..45d00490 100755 --- a/lexnlp/nlp/en/segments/paragraphs.py +++ b/lexnlp/nlp/en/segments/paragraphs.py @@ -161,7 +161,8 @@ def splitlines_with_spans(text: str) -> Tuple[List[str], List[Tuple[int, int]]]: spans: List[Tuple[int, int]] = [] if text is None: return lines, spans - last_line_end = -1 + # Start from offset 0 so single-line inputs without newlines keep full text. + last_line_end = 0 for m in RE_NEW_LINE.finditer(text): line = m.group('line') span = m.span() diff --git a/lexnlp/utils/amount_delimiting.py b/lexnlp/utils/amount_delimiting.py index 96eae5f6..4d5b7865 100644 --- a/lexnlp/utils/amount_delimiting.py +++ b/lexnlp/utils/amount_delimiting.py @@ -169,6 +169,19 @@ def infer_delimiters( group_delimiter: str = locale_conventions['thousands_sep'] grouping: List[int] = locale_conventions['grouping'] + # Some runners do not have locale packs (e.g., de_DE.UTF-8) installed and + # silently fall back to another locale (often C or en_US). This breaks + # delimiter inference for values like "10.800" in German contexts. + # de_DE is hardcoded in DE extractors, so enforce its canonical delimiters + # whenever locale resolution does not match those conventions. + if ( + _locale.lower().startswith('de_de') + and (decimal_delimiter != ',' or group_delimiter != '.') + ): + decimal_delimiter = ',' + group_delimiter = '.' + grouping = [3, 3, 0] + delimiters, blocks = get_delimited_blocks(text) len_delimiters: int = len(delimiters) diff --git a/notes.md b/notes.md new file mode 100644 index 00000000..ed304db2 --- /dev/null +++ b/notes.md @@ -0,0 +1,152 @@ +# LexNLP Dependency Modernization Notes + +Date: February 14, 2026 +Repo: `/Users/jackeames/Downloads/LexNLP` + +## Objective + +Modernize dependency and test tooling so LexNLP is reproducible with `uv`, Python 3.11, and a strict no-test-bypass policy while keeping behavior stable. + +## What was required + +1. Move install/runtime metadata to `pyproject.toml` and lock with `uv.lock`. +2. Align dependency versions to combinations that build and run on modern Python. +3. Make optional runtime assets deterministic (NLTK, contract model, Stanford, optional Tika). +4. Enforce test integrity (no new skip/xfail bypasses). +5. Verify packaging artifacts are clean and installable. + +## Issues encountered and how they were fixed + +### 1) Legacy dependency pins were not viable on current interpreters/toolchains +- Problem: historical pins were brittle on newer Python/packaging tooling. +- Fix: standardized on Python 3.11 and curated compatible ranges in `pyproject.toml`, then generated and used `uv.lock` in CI/local runs. + +### 2) Serialized sklearn artifacts were loaded under newer sklearn +- Problem: older serialized models triggered compatibility warnings and runtime attribute mismatches (notably GaussianNB legacy attributes). +- Fix: pinned to `scikit-learn>=1.2.2,<1.3` and added compatibility handling in `lexnlp/ml/predictor.py` for legacy `sigma_` data. + +### 3) Pandas API drift broke a parser path +- Problem: deprecated `error_bad_lines` behavior caused incompatibility on modern pandas. +- Fix: updated `lexnlp/extract/es/regulations.py` to use `on_bad_lines='skip'` with backward-compatible fallback. + +### 4) Test reliability depended on non-Python assets +- Problem: failing/skipped tests when corpora/models/Stanford jars were missing. +- Fix: introduced `scripts/bootstrap_assets.py` with deterministic flags for: + - NLTK corpora + - contract model artifact + - Stanford jars/models (plus Java requirement) + - optional Tika + +### 5) Skips/xfails could hide regressions +- Problem: policy needed to prevent making builds green by bypassing tests. +- Fix: added `ci/skip_audit.py` and `ci/skip_audit_allowlist.txt`, wired into CI to fail on unapproved new skip/xfail markers. + +### 6) Packaging artifacts included unwanted content risk +- Problem: release artifacts could unintentionally include local runtime blobs (`libs/stanford_nlp`), bytecode caches, and deprecated manifest files. +- Fix: + - tightened `MANIFEST.in` + - added `ci/check_dist_contents.py` + - enforced artifact content audit in CI packaging job + +## Final validation results + +- Skip audit: `skip-audit: OK (markers=11, allowlisted=11, annotated_new=0)` +- Base suite (`./.venv311/bin/python -m pytest -q`): `497 passed, 11 skipped, 0 failed` +- Stanford-gated suite (`LEXNLP_USE_STANFORD=true` targeted files): `11 passed, 0 failed` +- Net demonstrated pass count: `508/508` +- Packaging: + - `uv build` succeeds + - `python3 ci/check_dist_contents.py` succeeds +- wheel install smoke test succeeds and imports `lexnlp==2.3.0` + +## Follow-up completed (quality gate in CI) + +- Added committed baseline metrics fixture: + - `test_data/model_quality/is_contract_baseline_metrics.json` +- Extended `scripts/model_quality_gate.py` to: + - consume baseline metrics JSON directly + - validate fixture/min-probability alignment + - optionally write canonical baseline metrics JSON +- Added a dedicated GitHub Actions job `model-quality` in + - `.github/workflows/ci.yml` + - This runs the contract-model quality gate and uploads the JSON result as an artifact. + +## Follow-up completed (model artifact refresh workflow) + +- Added `scripts/reexport_contract_model.py` to support deterministic re-serialization + of `pipeline/is-contract/0.1` into a new local catalog tag (for example + `pipeline/is-contract/0.2`) under the current runtime. +- The script writes per-tag metadata JSON and runs `scripts/model_quality_gate.py` + automatically unless `--skip-quality-gate` is passed. +- The script also compares legacy sklearn warning counts between source and + candidate artifacts to ensure warning behavior does not regress. + +## Follow-up completed (bundled date-model refresh) + +- Re-serialized `/Users/jackeames/Downloads/LexNLP/lexnlp/extract/en/date_model.pickle` + on Python 3.11 / sklearn 1.2 runtime. +- Result: legacy sklearn unpickle warnings from the date model dropped to zero. +- Targeted validation after refresh: + - `pytest lexnlp/extract/en/tests/test_dates.py lexnlp/extract/en/contracts/tests/test_contracts.py` + - `11 passed` with reduced warning set. + +## Final CI stabilization (post-migration) + +While validating the migrated stack on GitHub Actions, one base-suite run still failed +with two environment-sensitive issues. Both were fixed without adding skips/xfails. + +### 1) German money parsing on locale-limited runners +- Symptom: `lexnlp/extract/de/tests/test_money.py::TestMoneyPlain::test_symmetrical_money` + returned `Decimal('10.800')` instead of `Decimal('10800')` in CI. +- Root cause: `de_DE.UTF-8` was not always available; locale resolution could fall back + to non-German numeric conventions. +- Fix: hardened `lexnlp/utils/amount_delimiting.py` to enforce canonical `de_DE` + delimiters when locale resolution does not match `de_DE` conventions. + +### 2) Paragraph segmentation edge case for single-line input +- Symptom: `lexnlp/nlp/en/tests/test_paragraphs.py::TestParagraphs::test_date_text` + intermittently returned `'6'` instead of the full timestamp text. +- Root cause: `splitlines_with_spans()` initialized `last_line_end` to `-1`, so + no-newline input could be sliced from the final character depending on model output. +- Fix: updated `lexnlp/nlp/en/segments/paragraphs.py` to initialize `last_line_end` + at `0`, preserving full single-line input spans. + +### CI verification after these fixes +- Commit: `b07b9b6` +- Run: `https://github.com/5pence5/lexpredict-lexnlp_fixed/actions/runs/22010774834` +- Result: all jobs green + - `Base Tests` + - `Stanford Tests` + - `Model Quality Gate` + - `Packaging Smoke` + +## Operational guidance + +Reliable full-validation flow on this machine: + +```bash +cd /Users/jackeames/Downloads/LexNLP + +# env +uv venv --python 3.11 .venv311 +uv sync --frozen --python .venv311/bin/python --extra dev --extra test + +# assets +./.venv311/bin/python scripts/bootstrap_assets.py --nltk --contract-model +./.venv311/bin/python scripts/bootstrap_assets.py --stanford + +# base tests +./.venv311/bin/python -m pytest -q + +# stanford-only tests +PATH=/opt/homebrew/opt/openjdk/bin:$PATH \ +LEXNLP_USE_STANFORD=true \ +./.venv311/bin/python -m pytest -q \ + lexnlp/nlp/en/tests/test_stanford.py \ + lexnlp/extract/en/entities/tests/test_stanford_ner.py + +# policy + packaging +python3 ci/skip_audit.py +uv build +python3 ci/check_dist_contents.py +``` diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 00000000..1e70cdb7 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,98 @@ +[build-system] +requires = ["setuptools>=68", "wheel"] +build-backend = "setuptools.build_meta" + +[project] +name = "lexnlp" +version = "2.3.0" +description = "LexPredict LexNLP" +readme = { file = "README.rst", content-type = "text/x-rst" } +requires-python = ">=3.10,<3.13" +license = "AGPL-3.0-or-later" +authors = [ + { name = "ContraxSuite, LLC", email = "support@contraxsuite.com" } +] +keywords = [ + "legal", + "contract", + "document analytics", + "nlp", + "ml", + "machine learning", + "natural language" +] +classifiers = [ + "Development Status :: 4 - Beta", + "Intended Audience :: Information Technology", + "Intended Audience :: Legal Industry", + "Intended Audience :: Developers", + "Natural Language :: English", + "Topic :: Office/Business", + "Topic :: Text Processing :: Linguistic", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12" +] +dependencies = [ + "beautifulsoup4>=4.11.1,<5", + "cloudpickle>=2.2.0,<4", + "dateparser==1.1.3", + "elasticsearch>=8.5.0,<9", + "gensim>=4.3.2,<5", + "importlib-metadata>=5.0.0; python_version < '3.10'", + "joblib>=1.2.0,<2", + "lxml>=4.9.1,<6", + "nltk>=3.8.1,<3.9", + "num2words>=0.5.12,<1", + "numpy>=1.24.0,<2", + "pandas>=1.5.3,<2", + "psutil>=5.9.4,<7", + "pycountry>=22.3.5,<25", + "python-dateutil>=2.8.2,<3", + "regex==2022.3.2", + "reporters-db>=3.2.32,<4", + "requests>=2.28.1,<3", + "scikit-learn>=1.2.2,<1.3", + "scipy>=1.10.0,<1.11", + "tqdm>=4.64.1,<5", + "Unidecode>=1.3.6,<2", + "us>=2.0.2,<3", + "zahlwort2num>=0.4.2,<1" +] + +[project.optional-dependencies] +dev = [ + "build>=1.2.2", + "memory-profiler>=0.61.0", + "nose>=1.3.7,<2", + "pylint>=3.3.0", + "pytest>=8.3.0", + "pytest-cov>=5.0.0", + "pytest-xdist>=3.6.0", + "sphinx>=7.4.0", + "twine>=5.1.1" +] +test = [ + "nose>=1.3.7,<2", + "pytest>=8.3.0", + "pytest-cov>=5.0.0", + "pytest-xdist>=3.6.0" +] +stanford = [] +tika = ["tika>=2.6.0"] + +[tool.setuptools] +include-package-data = true + +[tool.setuptools.packages.find] +exclude = ["*tests*"] + +[tool.ruff] +line-length = 120 +target-version = "py310" + +[tool.pytest.ini_options] +markers = [ + "serial: sequential-only tests" +] diff --git a/python-requirements-dev.txt b/python-requirements-dev.txt index 60c6c6de..e150c056 100644 --- a/python-requirements-dev.txt +++ b/python-requirements-dev.txt @@ -1,3 +1,7 @@ +# DEPRECATED: Legacy snapshot retained for historical reproduction only. +# Use pyproject.toml + uv.lock via: +# uv sync --frozen --extra dev --extra test + beautifulsoup4==4.11.1 cloudpickle==2.1.0 dateparser==1.1.1 @@ -31,4 +35,4 @@ tika==1.24 twine==4.0.1 Unidecode==1.3.4 us==2.0.2 -zahlwort2num==0.3.0 \ No newline at end of file +zahlwort2num==0.3.0 diff --git a/python-requirements-full.txt b/python-requirements-full.txt index 6209c2a4..b91ac563 100644 --- a/python-requirements-full.txt +++ b/python-requirements-full.txt @@ -1,3 +1,7 @@ +# DEPRECATED: Legacy snapshot retained for historical reproduction only. +# Use pyproject.toml + uv.lock via: +# uv sync --frozen --extra dev --extra test + beautifulsoup4==4.11.1 cloudpickle==2.1.0 coverage==6.4.1 diff --git a/python-requirements.txt b/python-requirements.txt index 04f69dda..f366c979 100755 --- a/python-requirements.txt +++ b/python-requirements.txt @@ -1,3 +1,7 @@ +# DEPRECATED: Legacy snapshot retained for historical reproduction only. +# Use pyproject.toml + uv.lock via: +# uv sync --frozen --extra dev --extra test + alabaster==0.7.12 astroid==2.12.12 attrs==22.1.0 diff --git a/scripts/bootstrap_assets.py b/scripts/bootstrap_assets.py new file mode 100755 index 00000000..78e8225e --- /dev/null +++ b/scripts/bootstrap_assets.py @@ -0,0 +1,345 @@ +#!/usr/bin/env python3 +"""Deterministic cross-platform bootstrap utility for LexNLP assets.""" + +from __future__ import annotations + +import argparse +import logging +import sys +import zipfile +from pathlib import Path +from typing import Iterable, List, Sequence, Tuple +from urllib.request import Request, urlopen + +LOGGER = logging.getLogger("lexnlp.bootstrap") + +REPO_ROOT = Path(__file__).resolve().parents[1] +DEFAULT_STANFORD_DIR = REPO_ROOT / "libs" / "stanford_nlp" +DEFAULT_TIKA_DIR = REPO_ROOT / "bin" + +NLTK_RESOURCES = ( + "punkt", + "wordnet", + "omw-1.4", + "averaged_perceptron_tagger", + "maxent_ne_chunker", + "words", +) +OPTIONAL_NLTK_RESOURCES = ("punkt_tab",) + +CONTRACT_MODEL_TAG = "pipeline/is-contract/0.1" + +STANFORD_DOWNLOADS: Tuple[Tuple[str, str, Tuple[str, ...]], ...] = ( + ( + "stanford-postagger-full-2017-06-09.zip", + "https://nlp.stanford.edu/software/stanford-postagger-full-2017-06-09.zip", + ( + "stanford-postagger-full-2017-06-09/stanford-postagger.jar", + "stanford-postagger-full-2017-06-09/models/english-bidirectional-distsim.tagger", + ), + ), + ( + "stanford-ner-2017-06-09.zip", + "https://nlp.stanford.edu/software/stanford-ner-2017-06-09.zip", + ( + "stanford-ner-2017-06-09/stanford-ner.jar", + "stanford-ner-2017-06-09/classifiers/english.all.3class.distsim.crf.ser.gz", + ), + ), +) + +TIKA_DOWNLOADS: Tuple[Tuple[str, str], ...] = ( + ( + "tika-app-1.16.jar", + "https://archive.apache.org/dist/tika/tika-app-1.16.jar", + ), + ( + "tika-server-1.16.jar", + "https://archive.apache.org/dist/tika/tika-server-1.16.jar", + ), +) + + +class BootstrapError(Exception): + """Raised when one or more bootstrap tasks fail.""" + + +def configure_logging(verbose: bool) -> None: + level = logging.DEBUG if verbose else logging.INFO + logging.basicConfig(level=level, format="[bootstrap][%(levelname)s] %(message)s") + + +def parse_args(argv: Sequence[str]) -> argparse.Namespace: + parser = argparse.ArgumentParser( + description="Bootstrap LexNLP runtime/test assets in a deterministic way.", + ) + parser.add_argument("--nltk", action="store_true", help="Download required NLTK resources.") + parser.add_argument( + "--contract-model", + action="store_true", + help="Download LexNLP contract model release pipeline/is-contract/0.1.", + ) + parser.add_argument( + "--stanford", + action="store_true", + help="Download Stanford POS tagger and NER ZIP artifacts.", + ) + parser.add_argument( + "--tika", + action="store_true", + help="Download Apache Tika 1.16 app/server jars.", + ) + parser.add_argument("--all", action="store_true", help="Run all bootstrap tasks.") + parser.add_argument( + "--stanford-dir", + default=str(DEFAULT_STANFORD_DIR), + help="Destination directory for Stanford ZIPs (default: libs/stanford_nlp).", + ) + parser.add_argument( + "--tika-dir", + default=str(DEFAULT_TIKA_DIR), + help="Destination directory for Tika jars (default: bin).", + ) + parser.add_argument( + "--dry-run", + action="store_true", + help="Print planned actions without network/file writes.", + ) + parser.add_argument( + "--force", + action="store_true", + help="Re-download files even if destination files already exist.", + ) + parser.add_argument( + "--timeout", + type=int, + default=60, + help="Network timeout in seconds for each request (default: 60).", + ) + parser.add_argument("--verbose", action="store_true", help="Enable debug logging.") + + args = parser.parse_args(argv) + + if not any((args.nltk, args.contract_model, args.stanford, args.tika, args.all)): + parser.error("Select at least one task: --nltk, --contract-model, --stanford, --tika, or --all") + + if args.timeout <= 0: + parser.error("--timeout must be a positive integer") + + return args + + +def ensure_directory(path: Path, dry_run: bool) -> None: + if dry_run: + LOGGER.info("DRY RUN: would create directory %s", path) + return + path.mkdir(parents=True, exist_ok=True) + + +def download_file( + url: str, + destination: Path, + *, + force: bool, + dry_run: bool, + timeout: int, +) -> None: + if destination.exists() and not force: + LOGGER.info("Skipping existing file: %s", destination) + return + + ensure_directory(destination.parent, dry_run=dry_run) + + if dry_run: + LOGGER.info("DRY RUN: would download %s -> %s", url, destination) + return + + tmp_destination = destination.with_name(destination.name + ".part") + if tmp_destination.exists(): + tmp_destination.unlink() + + request = Request(url, headers={"User-Agent": "lexnlp-bootstrap/1.0"}) + LOGGER.info("Downloading %s", url) + + try: + with urlopen(request, timeout=timeout) as response, tmp_destination.open("wb") as output_file: + while True: + chunk = response.read(64 * 1024) + if not chunk: + break + output_file.write(chunk) + tmp_destination.replace(destination) + except Exception: + if tmp_destination.exists(): + tmp_destination.unlink() + raise + + LOGGER.info("Saved %s", destination) + + +def download_many( + downloads: Iterable[Tuple[str, str]], + destination_dir: Path, + *, + force: bool, + dry_run: bool, + timeout: int, +) -> None: + for filename, url in downloads: + destination = destination_dir / filename + download_file(url, destination, force=force, dry_run=dry_run, timeout=timeout) + + +def extract_zip(archive_path: Path, destination_dir: Path, *, dry_run: bool) -> None: + if dry_run: + LOGGER.info("DRY RUN: would extract %s -> %s", archive_path, destination_dir) + return + LOGGER.info("Extracting %s", archive_path) + with zipfile.ZipFile(archive_path) as archive: + archive.extractall(destination_dir) + + +def bootstrap_stanford_assets( + destination_dir: Path, + *, + force: bool, + dry_run: bool, + timeout: int, +) -> None: + ensure_directory(destination_dir, dry_run=dry_run) + for filename, url, required_files in STANFORD_DOWNLOADS: + required_paths = [destination_dir / rel_path for rel_path in required_files] + if all(path.exists() for path in required_paths) and not force: + LOGGER.info("Skipping Stanford asset already present: %s", filename) + continue + + archive_path = destination_dir / filename + download_file(url, archive_path, force=force, dry_run=dry_run, timeout=timeout) + extract_zip(archive_path, destination_dir, dry_run=dry_run) + + if dry_run: + return + + missing = [] + for _, _, required_files in STANFORD_DOWNLOADS: + for required_file in required_files: + candidate = destination_dir / required_file + if not candidate.exists(): + missing.append(candidate) + if missing: + missing_display = ", ".join(str(path) for path in missing) + raise RuntimeError(f"Missing required Stanford files after download: {missing_display}") + + +def bootstrap_nltk(*, dry_run: bool) -> None: + if dry_run: + for resource in NLTK_RESOURCES: + LOGGER.info("DRY RUN: would download NLTK resource %s", resource) + return + + try: + import nltk + except ImportError as error: + raise RuntimeError("nltk is required for --nltk. Install dependencies first.") from error + + for resource in NLTK_RESOURCES: + LOGGER.info("Downloading NLTK resource: %s", resource) + nltk.download(resource, quiet=True, raise_on_error=True) + + for resource in OPTIONAL_NLTK_RESOURCES: + LOGGER.info("Attempting optional NLTK resource: %s", resource) + try: + nltk.download(resource, quiet=True, raise_on_error=True) + except Exception: + LOGGER.warning("Optional NLTK resource unavailable: %s", resource) + + +def bootstrap_contract_model(*, dry_run: bool) -> None: + if dry_run: + LOGGER.info("DRY RUN: would download LexNLP model tag %s", CONTRACT_MODEL_TAG) + return + + try: + from lexnlp.ml.catalog.download import download_github_release + except ImportError as error: + raise RuntimeError( + "Unable to import LexNLP catalog downloader. Ensure dependencies and editable install are in place." + ) from error + + LOGGER.info("Downloading LexNLP contract model: %s", CONTRACT_MODEL_TAG) + download_github_release(CONTRACT_MODEL_TAG, prompt_user=False) + + +def run_selected_tasks(args: argparse.Namespace) -> None: + run_nltk = args.all or args.nltk + run_contract_model = args.all or args.contract_model + run_stanford = args.all or args.stanford + run_tika = args.all or args.tika + + tasks: List[Tuple[str, object]] = [] + if run_nltk: + tasks.append(("nltk", lambda: bootstrap_nltk(dry_run=args.dry_run))) + if run_contract_model: + tasks.append(("contract-model", lambda: bootstrap_contract_model(dry_run=args.dry_run))) + if run_stanford: + stanford_dir = Path(args.stanford_dir).expanduser().resolve() + tasks.append( + ( + "stanford", + lambda: bootstrap_stanford_assets( + stanford_dir, + force=args.force, + dry_run=args.dry_run, + timeout=args.timeout, + ), + ) + ) + if run_tika: + tika_dir = Path(args.tika_dir).expanduser().resolve() + tasks.append( + ( + "tika", + lambda: download_many( + TIKA_DOWNLOADS, + tika_dir, + force=args.force, + dry_run=args.dry_run, + timeout=args.timeout, + ), + ) + ) + + failures: List[str] = [] + for name, task in tasks: + LOGGER.info("Starting task: %s", name) + try: + task() + LOGGER.info("Finished task: %s", name) + except Exception: + LOGGER.exception("Task failed: %s", name) + failures.append(name) + + if failures: + raise BootstrapError("Failed tasks: {}".format(", ".join(failures))) + + +def main(argv: Sequence[str]) -> int: + args = parse_args(argv) + configure_logging(args.verbose) + + LOGGER.debug("Repository root: %s", REPO_ROOT) + if args.dry_run: + LOGGER.info("Dry-run mode enabled; no downloads or filesystem writes will occur.") + + try: + run_selected_tasks(args) + except BootstrapError as error: + LOGGER.error(str(error)) + return 1 + + LOGGER.info("Bootstrap tasks completed successfully.") + return 0 + + +if __name__ == "__main__": + sys.exit(main(sys.argv[1:])) diff --git a/scripts/model_quality_gate.py b/scripts/model_quality_gate.py new file mode 100644 index 00000000..e4ebe40e --- /dev/null +++ b/scripts/model_quality_gate.py @@ -0,0 +1,300 @@ +#!/usr/bin/env python3 +"""Quality gate for contract-classifier model upgrades.""" + +from __future__ import annotations + +import argparse +import csv +import json +import sys +from pathlib import Path +from typing import Any, Dict, List, Sequence, Tuple + + +DEFAULT_FIXTURE = Path( + "test_data/lexnlp/extract/en/contracts/tests/test_contracts/test_is_contract.csv" +) +REQUIRED_METRIC_KEYS = ("accuracy", "f1", "precision", "recall") + + +def parse_args(argv: Sequence[str]) -> argparse.Namespace: + parser = argparse.ArgumentParser( + description="Compare baseline and candidate contract models on a labeled fixture.", + ) + parser.add_argument( + "--baseline-tag", + default="pipeline/is-contract/0.1", + help="Catalog tag used as baseline model.", + ) + parser.add_argument( + "--baseline-metrics-json", + type=Path, + help=( + "Optional path to committed baseline metrics JSON. " + "When provided, baseline metrics are loaded from this file " + "instead of executing the baseline model." + ), + ) + parser.add_argument( + "--baseline-metrics-tolerance", + type=float, + default=1e-9, + help="Tolerance for fixture/probability checks when baseline metrics JSON is used.", + ) + parser.add_argument( + "--candidate-tag", + required=True, + help="Catalog tag used as candidate model.", + ) + parser.add_argument( + "--fixture", + type=Path, + default=DEFAULT_FIXTURE, + help=f"CSV fixture path (default: {DEFAULT_FIXTURE})", + ) + parser.add_argument( + "--min-probability", + type=float, + default=0.3, + help="Classification threshold used by is_contract.", + ) + parser.add_argument( + "--max-accuracy-regression", + type=float, + default=0.0, + help="Maximum allowed candidate accuracy drop vs baseline.", + ) + parser.add_argument( + "--max-f1-regression", + type=float, + default=0.0, + help="Maximum allowed candidate F1 drop vs baseline.", + ) + parser.add_argument( + "--min-candidate-accuracy", + type=float, + default=0.0, + help="Absolute minimum candidate accuracy.", + ) + parser.add_argument( + "--output-json", + type=Path, + help="Optional path to write JSON results.", + ) + parser.add_argument( + "--write-baseline-metrics-json", + type=Path, + help=( + "Optional path to write canonical baseline metrics JSON " + "(baseline_tag, fixture, min_probability, metrics)." + ), + ) + return parser.parse_args(argv) + + +def load_fixture(path: Path) -> Tuple[List[str], List[bool]]: + if not path.exists(): + raise FileNotFoundError(f"Fixture file not found: {path}") + + texts: List[str] = [] + labels: List[bool] = [] + + with path.open("r", encoding="utf-8", newline="") as fixture_file: + reader = csv.DictReader(fixture_file) + for row in reader: + text = row["Text"] + label_raw = row["Is_Contract"].strip().lower() + if label_raw not in {"true", "false"}: + raise ValueError(f"Unexpected label value: {row['Is_Contract']}") + texts.append(text) + labels.append(label_raw == "true") + + if not texts: + raise ValueError(f"Fixture file contains no rows: {path}") + return texts, labels + + +def ensure_tag_downloaded(tag: str) -> Path: + from lexnlp.ml.catalog import get_path_from_catalog + from lexnlp.ml.catalog.download import download_github_release + + try: + return get_path_from_catalog(tag) + except FileNotFoundError: + download_github_release(tag, prompt_user=False) + return get_path_from_catalog(tag) + + +def load_pipeline_for_tag(tag: str): + from cloudpickle import load + + model_path = ensure_tag_downloaded(tag) + with model_path.open("rb") as model_file: + return load(model_file) + + +def score_pipeline(pipeline, texts: List[str], labels: List[bool], min_probability: float) -> Dict[str, float]: + from sklearn.metrics import accuracy_score, f1_score, precision_score, recall_score + from lexnlp.extract.en.contracts.predictors import ProbabilityPredictorIsContract + + predictor = ProbabilityPredictorIsContract(pipeline=pipeline) + predictions = [ + bool(predictor.is_contract(text=text, min_probability=min_probability)) + for text in texts + ] + return { + "accuracy": float(accuracy_score(labels, predictions)), + "f1": float(f1_score(labels, predictions)), + "precision": float(precision_score(labels, predictions, zero_division=0)), + "recall": float(recall_score(labels, predictions, zero_division=0)), + } + + +def parse_metrics(raw: Dict[str, Any], source: str) -> Dict[str, float]: + missing = [key for key in REQUIRED_METRIC_KEYS if key not in raw] + if missing: + raise ValueError(f"Missing metric keys in {source}: {', '.join(missing)}") + + return { + key: float(raw[key]) + for key in REQUIRED_METRIC_KEYS + } + + +def load_baseline_metrics(path: Path) -> Dict[str, Any]: + if not path.exists(): + raise FileNotFoundError(f"Baseline metrics file not found: {path}") + + payload = json.loads(path.read_text(encoding="utf-8")) + if not isinstance(payload, dict): + raise ValueError("Baseline metrics JSON must be an object") + + # Accept either a dedicated "metrics" object or the full quality-gate output shape. + if "metrics" in payload: + metrics = parse_metrics(payload["metrics"], f"{path}::metrics") + elif "baseline" in payload: + metrics = parse_metrics(payload["baseline"], f"{path}::baseline") + else: + raise ValueError( + f"Baseline metrics JSON must contain either 'metrics' or 'baseline': {path}" + ) + + return { + "metrics": metrics, + "baseline_tag": payload.get("baseline_tag"), + "fixture": payload.get("fixture"), + "min_probability": payload.get("min_probability"), + "raw": payload, + } + + +def main(argv: Sequence[str]) -> int: + args = parse_args(argv) + texts, labels = load_fixture(args.fixture) + + baseline_source = "tag" + baseline_metrics_source = None + baseline_metrics_file: Dict[str, Any] | None = None + + if args.baseline_metrics_json: + baseline_source = "metrics-json" + baseline_metrics_source = str(args.baseline_metrics_json) + baseline_metrics_file = load_baseline_metrics(args.baseline_metrics_json) + baseline_metrics = baseline_metrics_file["metrics"] + + file_baseline_tag = baseline_metrics_file.get("baseline_tag") + if file_baseline_tag and file_baseline_tag != args.baseline_tag: + raise ValueError( + "Baseline tag mismatch between --baseline-tag and --baseline-metrics-json: " + f"{args.baseline_tag!r} != {file_baseline_tag!r}" + ) + + file_fixture = baseline_metrics_file.get("fixture") + if file_fixture: + expected_fixture = str(args.fixture) + if file_fixture != expected_fixture: + raise ValueError( + "Fixture mismatch between --fixture and --baseline-metrics-json: " + f"{expected_fixture!r} != {file_fixture!r}" + ) + + file_min_probability = baseline_metrics_file.get("min_probability") + if file_min_probability is not None: + if abs(float(file_min_probability) - args.min_probability) > args.baseline_metrics_tolerance: + raise ValueError( + "min_probability mismatch between CLI and baseline metrics JSON: " + f"{args.min_probability} != {file_min_probability}" + ) + else: + baseline_metrics = score_pipeline( + load_pipeline_for_tag(args.baseline_tag), + texts, + labels, + args.min_probability, + ) + + candidate_metrics = score_pipeline( + load_pipeline_for_tag(args.candidate_tag), + texts, + labels, + args.min_probability, + ) + + result = { + "baseline_tag": args.baseline_tag, + "candidate_tag": args.candidate_tag, + "fixture": str(args.fixture), + "min_probability": args.min_probability, + "baseline_source": baseline_source, + "baseline_metrics_json": baseline_metrics_source, + "baseline": baseline_metrics, + "candidate": candidate_metrics, + } + + print(json.dumps(result, indent=2, sort_keys=True)) + + violations: List[str] = [] + accuracy_drop = baseline_metrics["accuracy"] - candidate_metrics["accuracy"] + f1_drop = baseline_metrics["f1"] - candidate_metrics["f1"] + + if accuracy_drop > args.max_accuracy_regression: + violations.append( + "accuracy regression exceeds threshold " + f"({accuracy_drop:.6f} > {args.max_accuracy_regression:.6f})" + ) + if f1_drop > args.max_f1_regression: + violations.append( + f"f1 regression exceeds threshold ({f1_drop:.6f} > {args.max_f1_regression:.6f})" + ) + if candidate_metrics["accuracy"] < args.min_candidate_accuracy: + violations.append( + "candidate accuracy below minimum " + f"({candidate_metrics['accuracy']:.6f} < {args.min_candidate_accuracy:.6f})" + ) + + if args.output_json: + args.output_json.parent.mkdir(parents=True, exist_ok=True) + args.output_json.write_text(json.dumps(result, indent=2, sort_keys=True), encoding="utf-8") + + if args.write_baseline_metrics_json: + baseline_payload = { + "baseline_tag": args.baseline_tag, + "fixture": str(args.fixture), + "metrics": baseline_metrics, + "min_probability": args.min_probability, + } + args.write_baseline_metrics_json.parent.mkdir(parents=True, exist_ok=True) + args.write_baseline_metrics_json.write_text( + json.dumps(baseline_payload, indent=2, sort_keys=True), + encoding="utf-8", + ) + + if violations: + for violation in violations: + print(f"QUALITY GATE VIOLATION: {violation}") + return 1 + return 0 + + +if __name__ == "__main__": + raise SystemExit(main(sys.argv[1:])) diff --git a/scripts/reexport_contract_model.py b/scripts/reexport_contract_model.py new file mode 100644 index 00000000..7fcec4f8 --- /dev/null +++ b/scripts/reexport_contract_model.py @@ -0,0 +1,281 @@ +#!/usr/bin/env python3 +"""Re-export the contract classifier model under a new catalog tag.""" + +from __future__ import annotations + +import argparse +import json +import pickle +import subprocess +import sys +from datetime import datetime, timezone +from pathlib import Path +from typing import Sequence + +from cloudpickle import load + + +DEFAULT_FIXTURE = Path( + "test_data/lexnlp/extract/en/contracts/tests/test_contracts/test_is_contract.csv" +) +DEFAULT_BASELINE_METRICS = Path( + "test_data/model_quality/is_contract_baseline_metrics.json" +) +LEGACY_WARNING_TOKEN = "Trying to unpickle estimator" + + +def parse_args(argv: Sequence[str]) -> argparse.Namespace: + parser = argparse.ArgumentParser( + description=( + "Load an existing contract classifier tag and re-serialize it with " + "the current runtime under a new tag." + ) + ) + parser.add_argument( + "--source-tag", + default="pipeline/is-contract/0.1", + help="Source model tag to load from LexNLP catalog.", + ) + parser.add_argument( + "--target-tag", + required=True, + help="Destination model tag to write under LexNLP catalog.", + ) + parser.add_argument( + "--force", + action="store_true", + help="Overwrite destination artifact if it already exists.", + ) + parser.add_argument( + "--skip-quality-gate", + action="store_true", + help="Skip post-export quality-gate execution.", + ) + parser.add_argument( + "--fixture", + type=Path, + default=DEFAULT_FIXTURE, + help=f"Fixture CSV used by quality gate (default: {DEFAULT_FIXTURE}).", + ) + parser.add_argument( + "--baseline-metrics-json", + type=Path, + default=DEFAULT_BASELINE_METRICS, + help=( + "Baseline metrics JSON for quality gate. " + f"Default: {DEFAULT_BASELINE_METRICS}" + ), + ) + parser.add_argument( + "--max-accuracy-regression", + type=float, + default=0.0, + help="Maximum allowed candidate accuracy drop.", + ) + parser.add_argument( + "--max-f1-regression", + type=float, + default=0.0, + help="Maximum allowed candidate F1 drop.", + ) + parser.add_argument( + "--min-probability", + type=float, + default=0.3, + help="Probability threshold used by model quality gate.", + ) + parser.add_argument( + "--output-metadata-json", + type=Path, + help=( + "Optional explicit path for metadata JSON. " + "Defaults to artifacts/model_reexports/.metadata.json." + ), + ) + parser.add_argument( + "--max-legacy-warning-regression", + type=int, + default=0, + help=( + "Maximum allowed increase in legacy sklearn unpickle warning count " + "between source and candidate model." + ), + ) + return parser.parse_args(argv) + + +def ensure_tag_downloaded(tag: str) -> Path: + from lexnlp.ml.catalog import get_path_from_catalog + from lexnlp.ml.catalog.download import download_github_release + + try: + return get_path_from_catalog(tag) + except FileNotFoundError: + download_github_release(tag, prompt_user=False) + return get_path_from_catalog(tag) + + +def run_quality_gate( + *, + source_tag: str, + target_tag: str, + fixture: Path, + baseline_metrics_json: Path, + min_probability: float, + max_accuracy_regression: float, + max_f1_regression: float, +) -> None: + gate_script = Path(__file__).with_name("model_quality_gate.py") + cmd = [ + sys.executable, + str(gate_script), + "--baseline-tag", + source_tag, + "--candidate-tag", + target_tag, + "--fixture", + str(fixture), + "--min-probability", + str(min_probability), + "--max-accuracy-regression", + str(max_accuracy_regression), + "--max-f1-regression", + str(max_f1_regression), + ] + + if baseline_metrics_json.exists(): + cmd.extend(["--baseline-metrics-json", str(baseline_metrics_json)]) + + subprocess.run(cmd, check=True) + + +def get_legacy_warning_messages(model_path: Path) -> list[str]: + probe_code = """ +import json +import sys +import warnings +from pathlib import Path +from cloudpickle import load + +token = sys.argv[2] +path = Path(sys.argv[1]) +with warnings.catch_warnings(record=True) as captured: + warnings.simplefilter("always") + with path.open("rb") as model_file: + load(model_file) + +messages = [ + str(item.message).splitlines()[0] + for item in captured + if token in str(item.message) +] +print(json.dumps(messages)) +""" + result = subprocess.run( + [sys.executable, "-c", probe_code, str(model_path), LEGACY_WARNING_TOKEN], + check=True, + capture_output=True, + text=True, + ) + return json.loads(result.stdout.strip() or "[]") + + +def main(argv: Sequence[str]) -> int: + args = parse_args(argv) + if args.source_tag == args.target_tag: + raise ValueError("--source-tag and --target-tag must differ") + + from lexnlp import __version__ as lexnlp_version + from lexnlp.extract.en.contracts.predictors import ProbabilityPredictorIsContract + from lexnlp.ml.catalog import CATALOG + from sklearn import __version__ as sklearn_version + + source_path = ensure_tag_downloaded(args.source_tag) + destination_dir = CATALOG / args.target_tag + destination_path = destination_dir / source_path.name + + if destination_path.exists() and not args.force: + raise FileExistsError( + f"Destination already exists: {destination_path} " + "(use --force to overwrite)." + ) + + destination_dir.mkdir(parents=True, exist_ok=True) + + with source_path.open("rb") as source_file: + pipeline = load(source_file) + + # Validate and apply runtime compatibility patches before re-serializing. + ProbabilityPredictorIsContract(pipeline=pipeline) + + # Use stdlib pickle for re-export so sklearn writes current runtime metadata. + with destination_path.open("wb") as destination_file: + pickle.dump(pipeline, destination_file) + + default_metadata_path = Path("artifacts/model_reexports") / ( + f"{args.target_tag.replace('/', '__')}.metadata.json" + ) + metadata_path = args.output_metadata_json or default_metadata_path + metadata_path.parent.mkdir(parents=True, exist_ok=True) + metadata_payload = { + "created_at_utc": datetime.now(timezone.utc).isoformat(), + "source_tag": args.source_tag, + "target_tag": args.target_tag, + "source_model_path": str(source_path), + "target_model_path": str(destination_path), + "fixture": str(args.fixture), + "min_probability": args.min_probability, + "runtime": { + "python": sys.version.split()[0], + "scikit_learn": sklearn_version, + "lexnlp": lexnlp_version, + }, + } + metadata_path.write_text( + json.dumps(metadata_payload, indent=2, sort_keys=True), + encoding="utf-8", + ) + + print(f"re-export: wrote model to {destination_path}") + print(f"re-export: wrote metadata to {metadata_path}") + + source_legacy_warning_messages = get_legacy_warning_messages(source_path) + candidate_legacy_warning_messages = get_legacy_warning_messages(destination_path) + source_legacy_warning_count = len(source_legacy_warning_messages) + candidate_legacy_warning_count = len(candidate_legacy_warning_messages) + print( + "re-export: legacy sklearn warnings " + f"(source={source_legacy_warning_count}, candidate={candidate_legacy_warning_count})" + ) + + warning_regression = candidate_legacy_warning_count - source_legacy_warning_count + if warning_regression > args.max_legacy_warning_regression: + print( + "re-export: legacy warning regression exceeds threshold " + f"({warning_regression} > {args.max_legacy_warning_regression})" + ) + if candidate_legacy_warning_messages: + print("re-export: candidate legacy warnings:") + for message in candidate_legacy_warning_messages: + print(f" - {message}") + return 1 + + if args.skip_quality_gate: + print("re-export: skipping quality gate by request") + else: + run_quality_gate( + source_tag=args.source_tag, + target_tag=args.target_tag, + fixture=args.fixture, + baseline_metrics_json=args.baseline_metrics_json, + min_probability=args.min_probability, + max_accuracy_regression=args.max_accuracy_regression, + max_f1_regression=args.max_f1_regression, + ) + print("re-export: quality gate passed") + + return 0 + + +if __name__ == "__main__": + raise SystemExit(main(sys.argv[1:])) diff --git a/setup.py b/setup.py old mode 100755 new mode 100644 index f3a0032d..26e08e48 --- a/setup.py +++ b/setup.py @@ -1,153 +1,5 @@ -"""A setuptools based setup module. +from setuptools import setup -See: -https://packaging.python.org/en/latest/distributing.html -https://github.com/pypa/sampleproject -""" -# To use a consistent encoding -from os import path - -# Always prefer setuptools over distutils -from setuptools import setup, find_packages - -here = path.abspath(path.dirname(__file__)) - -# Get the long description from the README file -try: - with open(path.join(here, 'README.rst'), encoding='utf-8') as f: - long_description = f.read() -except Exception as e: - long_description = "LexPredict LexNLP: A swiss-army knife library built for working with real, unstructured legal text." - -setup( - name='lexnlp', - - # Versions should comply with PEP440. For a discussion on single-sourcing - # the version across setup.py and the project code, see - # https://packaging.python.org/en/latest/single_source_version.html - version='2.3.0', - - description='LexPredict LexNLP', - long_description=long_description, - - # The project's main homepage. - url='https://contraxsuite.com', - - # Author details - author='ContraxSuite, LLC', - author_email='support@contraxsuite.com', - - # Choose your license - license='AGPL', - - # version ranges for supported Python distributions - python_requires='~=3.6', - - # See https://pypi.python.org/pypi?%3Aaction=list_classifiers - classifiers=[ - # How mature is this project? Common values are - # 3 - Alpha - # 4 - Beta - # 5 - Production/Stable - 'Development Status :: 4 - Beta', - - # Indicate who your project is intended for - 'Intended Audience :: Information Technology', - 'Intended Audience :: Legal Industry', - 'Intended Audience :: Developers', - - # Pick your license as you wish (should match "license" above) - # 'License :: OSI Approved :: MIT License', - 'License :: OSI Approved :: GNU Affero General Public License v3', - 'License :: Other/Proprietary License', - - # Specify the Python versions you support here. In particular, ensure - # that you indicate whether you support Python 2, Python 3 or both. - 'Programming Language :: Python :: 3.6', - - # Topics - 'Natural Language :: English', - 'Topic :: Office/Business', - 'Topic :: Text Processing :: Linguistic', - - ], - - # What does your project relate to? - keywords='legal contract document analytics nlp ml machine learning natural language', - - # You can just specify the packages manually here if your project is - # simple. Or you can use find_packages(). - packages=find_packages(exclude=['*tests*']), - - # Alternatively, if you want to distribute just a my_module.py, uncomment - # this: - # py_modules=['lexnlp'], - - # List run-time dependencies here. These will be installed by pip when - # your project is installed. For an analysis of "install_requires" vs pip's - # requirements files see: - # https://packaging.python.org/en/latest/requirements.html - install_requires=[ - 'beautifulsoup4==4.11.1', - 'cloudpickle==2.2.0', - 'dateparser==1.1.3', - 'elasticsearch==8.5.0', - 'gensim==4.1.2', - 'importlib-metadata==5.0.0', - 'joblib==1.2.0', - 'lxml==4.9.1', - 'nltk==3.7', - 'num2words==0.5.12', - 'numpy==1.23.4', - 'pandas==1.5.1', - 'psutil==5.9.4', - 'pycountry==22.3.5', - 'python-dateutil==2.8.2', - 'regex==2022.3.2', - 'reporters-db==3.2.32', - 'requests==2.28.1', - 'scikit-learn==0.24', - 'scipy==1.9.3', - 'tqdm==4.64.1', - 'Unidecode==1.3.6', - 'us==2.0.2', - 'zahlwort2num==0.4.2' - ], - - # Install any data files from packages. - # The data files must be specified via the distutils’ MANIFEST.in file. - include_package_data=True, - - # List additional groups of dependencies here (e.g. development - # dependencies). You can install these using the following syntax, - # for example: - # $ pip install -e .[dev,test] - extras_require={ - 'dev': ['pytest>=2.8.5', 'mock', 'pytz>=2015.7', 'nose', 'memory-profiler', 'psutil', 'matplotlib', - 'Sphinx>=5.3.0'], - 'test': ['pytest>=2.8.5', 'mock', 'pytz>=2015.7', 'nose', 'memory-profiler', 'psutil', 'Sphinx>=5.3.0'], - }, - - # If there are data files included in your packages that need to be - # installed, specify them here. If using Python 2.6 or less, then these - # have to be included in MANIFEST.in as well. - # package_data={ - # 'sample': ['package_data.dat'], - # }, - - # Although 'package_data' is the preferred approach, in some case you may - # need to place data files outside of your packages. See: - # http://docs.python.org/3.4/distutils/setupscript.html#installing-additional-files # noqa - # In this case, 'data_file' will be installed into '/my_data' - # data_files=[('my_data', ['data/data_file'])], - - # To provide executable scripts, use entry points in preference to the - # "scripts" keyword. Entry points provide cross-platform support and allow - # pip to create the appropriate form of executable for the target platform. - # entry_points={ - # 'console_scripts': [ - # 'sample=sample:main', - # ], - # }, -) +if __name__ == "__main__": + setup() diff --git a/test_data/model_quality/is_contract_baseline_metrics.json b/test_data/model_quality/is_contract_baseline_metrics.json new file mode 100644 index 00000000..bf299a4d --- /dev/null +++ b/test_data/model_quality/is_contract_baseline_metrics.json @@ -0,0 +1,11 @@ +{ + "baseline_tag": "pipeline/is-contract/0.1", + "fixture": "test_data/lexnlp/extract/en/contracts/tests/test_contracts/test_is_contract.csv", + "metrics": { + "accuracy": 1.0, + "f1": 1.0, + "precision": 1.0, + "recall": 1.0 + }, + "min_probability": 0.3 +} diff --git a/uv.lock b/uv.lock new file mode 100644 index 00000000..d1cedc04 --- /dev/null +++ b/uv.lock @@ -0,0 +1,1696 @@ +version = 1 +revision = 3 +requires-python = ">=3.10, <3.13" +resolution-markers = [ 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