diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 72b278d..9ed9d41 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -1,21 +1,19 @@ name: CI -on: push -jobs: - build: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v2 - - uses: actions/setup-node@v4.1.0 - with: - node-version: 22.11.0 - - name: Get Version - run: npm -v - - name: Install modules - run: npm ci - - name: Run ESLint - run: npm run lint +on: + # run on pushed commits to master and on new commits on pull requests + push: + pull_request: + types: [opened, synchronize] + +jobs: + Security: + name: Security Pipeline + uses: uc-cdis/.github/.github/workflows/securitypipeline.yaml@master + with: + python-poetry: 'false' + secrets: inherit # pragma: allowlist secret validate-tool: uses: ARPA-H-BDF/bdfkb-schema/.github/workflows/ci-validate.yaml@main with: - python-version: '3.9' \ No newline at end of file + python-version: '3.9' diff --git a/.github/workflows/image_build_push.yaml b/.github/workflows/image_build_push.yaml deleted file mode 100644 index 1230ec5..0000000 --- a/.github/workflows/image_build_push.yaml +++ /dev/null @@ -1,11 +0,0 @@ -name: Build Image and Push to Quay - -on: push - -jobs: - Security: - name: Security Pipeline - uses: uc-cdis/.github/.github/workflows/securitypipeline.yaml@master - with: - python-poetry: 'false' - secrets: inherit # pragma: allowlist-secret diff --git a/.nvmrc b/.nvmrc deleted file mode 100644 index 016e34b..0000000 --- a/.nvmrc +++ /dev/null @@ -1 +0,0 @@ -v20.17.0 diff --git a/README.md b/README.md index 4e74a03..0f861d0 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,10 @@ # midrc-interop -The MIDRC Interoperability Tool is a suite of Gen3 mesh software services that enable medical imaging data repositories to participate in a data mesh by sharing data, communicating, and exchanging information with other data resource, commons, and hubs. +The MIDRC Interoperability Tool is a suite of Gen3 mesh software services and API adaptors written in Python that enable medical imaging data repositories to participate in a data mesh by sharing data, communicating, and exchanging information with other data resource, commons, and hubs. + +## Prerequisites +This project is built with Python. Ensure you have Python 3.9 or later installed. + +## Gen3 SDK for Python + +The MIDRC interoperability tools for discovery metadata aggregation use the Gen3 SDK extensively, which can be found in GitHub at https://github.com/uc-cdis/gen3sdk-python. The Gen3 Software Development Kit (SDK) for Python provides classes and functions for handling common tasks when interacting with a Gen3 commons. It also exposes a Command Line Interface (CLI). Working with APIs can be overwhelming, so the MIDRC API adaptors use the Gen3 Python SDK/CLI to simplify communication with various nodes in the biomedical imaging data mesh. + diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..01419a3 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,3321 @@ +# This file is automatically @generated by Poetry 2.1.2 and should not be changed by hand. + +[[package]] +name = "aiofiles" +version = "25.1.0" +description = "File support for asyncio." +optional = false +python-versions = ">=3.9" +groups = ["main"] +files = [ + {file = "aiofiles-25.1.0-py3-none-any.whl", hash = "sha256:abe311e527c862958650f9438e859c1fa7568a141b22abcd015e120e86a85695"}, + {file = "aiofiles-25.1.0.tar.gz", hash = "sha256:a8d728f0a29de45dc521f18f07297428d56992a742f0cd2701ba86e44d23d5b2"}, +] + +[[package]] +name = "aiohappyeyeballs" +version = "2.6.1" +description = "Happy Eyeballs for asyncio" +optional = false +python-versions = ">=3.9" +groups = ["main"] 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