From 947be8175700d6f10170e966f0201c015c2816cb Mon Sep 17 00:00:00 2001
From: PranavHerur <herurpranav@gmail.com>
Date: Sat, 15 Mar 2025 20:06:52 -1000
Subject: [PATCH] Update readme

Updating read me with updated instructions for mimic-code scripts
---
 README.md | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index b753b55..5af3179 100644
--- a/README.md
+++ b/README.md
@@ -84,11 +84,14 @@ you must clone this github repository to a directory, which here we assume is st
 variable `$MIMIC_CODE_DIR`. After cloning, follow these instructions:
 
 ```
-cd $MIMIC_CODE_DIR/concepts
+cd $MIMIC_CODE_DIR/concepts_postgres
 psql -d mimic -f postgres-functions.sql
-bash postgres_make_concepts.sh
+psql -d mimic -f postgres-make-concepts.sql
 ```
 
+*Note:* 
+You may need to edit those 2 files and add `SET search_path TO mimiciii;`
+
 Next, you'll need to build 3 additional materialized views necessary for this pipeline. To do this (again with
 schema edit permission), navigate to `utils` and run `bash postgres_make_extended_concepts.sh` followed by
 `psql -d mimic -f niv-durations.sql`.