BowtieExample/BowtieExample.yaml at master · MariusDieckmann/BowtieExample · GitHub

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name: "bowtieexample"
image: "www.computational.bio.uni-giessen.de:5003/bowtieexample:latest"
description: "Bowtie and SAM-Tools example"
inputFormat:
  - "fastq"
outputFormat:
  - "vcf"
tags:
  - "snp calling"
startup_args:
  - "mkdir -p /mnt/workflow_data/results && ./script.sh"
fieldGroups:
  raw_data:
    name: "raw_data"
    label: "Fastq files"
    fieldList:
      input:
        name: "input"
        fieldType: "SingleS3File"
        label: "Input files"
        msgText: "FastqInputFile"
      index:
        name: "index"
        fieldType: "SingleS3File"
        label: "Index files"
        msgText: "FastqInputFile"
      indexFileName:
        name: "indexFileName"
        fieldType: "text"
        label: "indexFileName"
        msgText: "Name of the Index file for input to bowtie2"