Hello!
We recently ported the build function of pygenprop as an nf-core module here.
There are discussions for updating the original genome properties text file within EMBL-EBI, and I was wondering if you would be willing to update this repository if and when a new version is released.
Some suggestions on improvements;
- Textual format outputs, other than the current SQLite database (.micro), for direct implementation within downstream analyses and/or pipelines, without the need of extra intermediate steps (i.e., db queries, parsing IDs to descriptor names, etc.)
- A
--versions command to automatically output the pygenprop software versions
Thanks!
Hello!
We recently ported the build function of
pygenpropas an nf-core module here.There are discussions for updating the original genome properties text file within EMBL-EBI, and I was wondering if you would be willing to update this repository if and when a new version is released.
Some suggestions on improvements;
--versionscommand to automatically output thepygenpropsoftware versionsThanks!