pyproject.toml

[build-system]
requires = [
  "poetry-core>=1.8.0",
  "poetry-dynamic-versioning>=1.9.1,<2.0",
  # list dependencies to work with PIP_NO_DEPS=1
  "MarkupSafe>=2.0",
  "dunamai>=1.25,<2.0",
  "jinja2>=3.0,<4.0",
  "packaging>=24.0",
  "tomlkit>=0.13",
]
build-backend = "poetry_dynamic_versioning.backend"

[project]
name = "grid-apps"
requires-python = '>=3.12,<3.15'

description = "Grid creation and manipulation using GEOH5 format."
license = "MIT"
license-files = [
    "LICENSE",
    "docs/source/THIRD_PARTY_SOFTWARE.rst",
]
keywords = ["geology", "geophysics", "earth sciences"]
readme = "package.rst"
dynamic = ["version", "dependencies", "classifiers"]
authors = [{name = "Mira Geoscience", email = "support@mirageoscience.com"}]
maintainers = [
    { name = "Benjamin Kary", email = "benjamink@mirageoscience.com" },
    { name = "Dominique Fournier", email = "dominiquef@mirageoscience.com" }
]

[project.urls]
repository = "https://github.com/MiraGeoscience/grid-apps"
documentation  = "https://mirageoscience-grid-apps.readthedocs-hosted.com/"
homepage = "https://www.mirageoscience.com/mining-industry-software/python-integration/"

[tool.poetry]
requires-poetry = '>=2.0,<3.0'

classifiers = [
    "Development Status :: 2 - Pre-Alpha",
    "Intended Audience :: Science/Research",
    "Programming Language :: Python",
    "Topic :: Scientific/Engineering",
    "Topic :: Scientific/Engineering :: Mathematics",
    "Topic :: Scientific/Engineering :: Physics",
    "Operating System :: Microsoft :: Windows",
    "Operating System :: POSIX",
    "Operating System :: Unix",
    "Operating System :: MacOS",
    "Natural Language :: English",
]

packages = [
     { include = "grid_apps" },
     { include = "grid_apps-assets" },
]

include = [
    { path = "grid_apps/_version.py", format = ["sdist", "wheel"] },
]
version = "0.0.0.dev0"


[tool.poetry.dependencies]
discretize = "~0.12.0"
numpy = "~2.4.2"
pydantic = "~2.12.0"
scipy = "~1.17.0"

## pip dependencies from Git repositories
#----------------------------------------
#geoh5py = { version = ">=0.13.0a, 0.13.*", source = "pypi", allow-prereleases = true }
geoh5py = { git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "develop" }

#geoapps-utils = { version = ">=0.7.0a, 0.7.*", source = "pypi", allow-prereleases = true }
geoapps-utils = { git = "https://github.com/MiraGeoscience/geoapps-utils.git", rev = "develop" }

## about pip dependencies
# to be specified to work with conda-lock
# - from PyPI: my_package = { version = "1.2.3", source = "pypi" }
# - from URL:
#   - for a tags:   my_package = { url = "https://github.com/ORGANISATION/REPO/archive/refs/tags/VERSION_TAG.zip#sha256=" }
#   - for a branch: my_package = { url = "https://github.com/ORGANISATION/REPO/archive/refs/heads/BRANCH.zip#sha256=" }
# Note - conda-lock does not support the syntax: my_package = { git = ... }
#        while poetry2conda supports only { git = "...", tag = "..." }, and not { url = ... }

[tool.poetry.group.dev.dependencies]
Pygments = "*"
pylint = "*"
pytest = "*"
pytest-cov = "*"
pyyaml = '*'
packaging = '*'
sphinx = "*"
sphinx-autodoc-typehints = "*"
sphinx-rtd-theme = "*"

[tool.conda-lock]
platforms = ['win-64', 'linux-64']
channels = ['conda-forge']

[tool.conda-lock.dependencies]
libblas = "*=*mkl"

## indirect dependencies, forcing them here for installation through Conda not pip
#---------------------------------------------------------------------------------
h5py = ">=3.15.1, 3.*"  # from geoh5py
matplotlib-base = "3.10.*"  # from geoapps-utils
pillow = ">=12.1.0, 12.*"  # from geoh5py

[tool.poetry.requires-plugins]
poetry-dynamic-versioning = { version = ">=1.9.1,<2.0.0", extras = ["plugin"] }

[tool.poetry-dynamic-versioning]
bump = true
enable = true
fix-shallow-repository = true
strict = true
style = "pep440"
vcs = "git"

[tool.poetry-dynamic-versioning.substitution]
files = ["grid_apps/_version.py", "recipe.yaml"]
patterns = [
    { value = '''(^__version__\s*(?::.*?)?=\s*['"])[^'"]*(['"])''', mode = "str" },
    { value = '''(^\s*version\s*(?::.*?)?:\s*['"])[^'"]*(['"])''', mode = "str" },
]

[tool.poetry-dynamic-versioning.files."grid_apps/_version.py"]
persistent-substitution = true
initial-content = """
  # Version placeholder that will be replaced during substitution
  __version__ = "0.0.0"
"""

[tool.poetry-dynamic-versioning.files."recipe.yaml"]
persistent-substitution = true

[tool.ruff]
target-version = "py312"

[tool.ruff.lint]
ignore = [
    "B028",  # no-explicit-stacklevel for warnings.warn()
    "E501",  # line-too-long - code is reformatted (do not care about comments and docstring)
    "F401",  # unsused-import - covered by pycln
    "RUF005",  # collection-literal-concatenation - wrong suggestion with numpy arrays
]
select = [
    "A",  # flake8-builtins
    "B",  # flake8-bugbear
    "B006",  # Do not use mutable data structures for argument defaults
    "B9",  # flake8-bugbear opiniated warnings
    "BLE",  # flake8-blind-except
    "C4",  # flake8-comprehensions
    "C9",  # mccabe
    "E",  # pycodestyle errors
    "F",  # pyflakes
    "I",  # isort
    "RUF",  # ruff rules
    "TID", # flake8-tidy-imports
    "UP",  # pyupgrade
    "W",  # pycodestyle warnings
]

[tool.ruff.lint.mccabe]
max-complexity = 18

[tool.ruff.lint.isort]
lines-after-imports = 2

[tool.ruff.format]
# default formatting is just fine

[tool.mypy]
warn_unused_configs = true
ignore_missing_imports = true
scripts_are_modules = true
show_error_context = true
show_column_numbers = true
check_untyped_defs = true

plugins = [
    "pydantic.mypy"
]

[tool.pytest.ini_options]
#addopts =

[tool.coverage.run]
branch = true
source = ["grid_apps"]
omit = [
    "grid_apps/commands/hello_world.py"
]

[tool.coverage.report]
exclude_lines = [
    "raise NotImplementedError",
    "pass",
    "if TYPE_CHECKING",
    "pragma: no cover"
]

fail_under = 50

[tool.coverage.html]
skip_empty = true
skip_covered = true