From b6c9bc2448600abe2bcf0dc03da495611de17eb6 Mon Sep 17 00:00:00 2001 From: benjamink Date: Thu, 10 Apr 2025 12:50:36 -0700 Subject: [PATCH 1/8] handle 3d vector in rotated gradients --- .../direct_current_2d_inversion.ui.json | 3 +- .../direct_current_3d_inversion.ui.json | 3 +- .../direct_current_batch2d_inversion.ui.json | 3 +- .../uijson/fem_inversion.ui.json | 3 +- .../uijson/gravity_inversion.ui.json | 3 +- .../induced_polarization_2d_inversion.ui.json | 3 +- .../induced_polarization_3d_inversion.ui.json | 3 +- ...ced_polarization_batch2d_inversion.ui.json | 3 +- .../joint_cross_gradient_inversion.ui.json | 6 ++- .../uijson/joint_surveys_inversion.ui.json | 3 +- .../uijson/magnetic_scalar_inversion.ui.json | 3 +- .../uijson/magnetic_vector_inversion.ui.json | 3 +- .../uijson/magnetotellurics_inversion.ui.json | 3 +- .../uijson/tdem_inversion.ui.json | 3 +- .../uijson/tipper_inversion.ui.json | 3 +- simpeg_drivers/params.py | 39 +++++++++------- simpeg_drivers/utils/regularization.py | 46 +++++++++++++++++++ .../driver_rotated_gradients_test.py | 14 +++--- tests/utils_regularization_test.py | 44 ++++++++++++++++++ 19 files changed, 152 insertions(+), 39 deletions(-) diff --git a/simpeg_drivers-assets/uijson/direct_current_2d_inversion.ui.json b/simpeg_drivers-assets/uijson/direct_current_2d_inversion.ui.json index da4e8783..04373fb1 100644 --- a/simpeg_drivers-assets/uijson/direct_current_2d_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/direct_current_2d_inversion.ui.json @@ -283,7 +283,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers-assets/uijson/direct_current_3d_inversion.ui.json b/simpeg_drivers-assets/uijson/direct_current_3d_inversion.ui.json index 896658ff..cea5fe7d 100644 --- a/simpeg_drivers-assets/uijson/direct_current_3d_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/direct_current_3d_inversion.ui.json @@ -238,7 +238,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers-assets/uijson/direct_current_batch2d_inversion.ui.json b/simpeg_drivers-assets/uijson/direct_current_batch2d_inversion.ui.json index 36761d7f..01d4f536 100644 --- a/simpeg_drivers-assets/uijson/direct_current_batch2d_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/direct_current_batch2d_inversion.ui.json @@ -265,7 +265,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers-assets/uijson/fem_inversion.ui.json b/simpeg_drivers-assets/uijson/fem_inversion.ui.json index f88585b1..47038ebb 100644 --- a/simpeg_drivers-assets/uijson/fem_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/fem_inversion.ui.json @@ -274,7 +274,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers-assets/uijson/gravity_inversion.ui.json b/simpeg_drivers-assets/uijson/gravity_inversion.ui.json index 8b16f211..d5c31d0e 100644 --- a/simpeg_drivers-assets/uijson/gravity_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/gravity_inversion.ui.json @@ -507,7 +507,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers-assets/uijson/induced_polarization_2d_inversion.ui.json b/simpeg_drivers-assets/uijson/induced_polarization_2d_inversion.ui.json index b8fb7964..4dd0ae43 100644 --- a/simpeg_drivers-assets/uijson/induced_polarization_2d_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/induced_polarization_2d_inversion.ui.json @@ -293,7 +293,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers-assets/uijson/induced_polarization_3d_inversion.ui.json b/simpeg_drivers-assets/uijson/induced_polarization_3d_inversion.ui.json index 462612ec..36b41691 100644 --- a/simpeg_drivers-assets/uijson/induced_polarization_3d_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/induced_polarization_3d_inversion.ui.json @@ -254,7 +254,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers-assets/uijson/induced_polarization_batch2d_inversion.ui.json b/simpeg_drivers-assets/uijson/induced_polarization_batch2d_inversion.ui.json index 839d181e..2ef75d30 100644 --- a/simpeg_drivers-assets/uijson/induced_polarization_batch2d_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/induced_polarization_batch2d_inversion.ui.json @@ -276,7 +276,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers-assets/uijson/joint_cross_gradient_inversion.ui.json b/simpeg_drivers-assets/uijson/joint_cross_gradient_inversion.ui.json index cb99b67f..2ffe8712 100644 --- a/simpeg_drivers-assets/uijson/joint_cross_gradient_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/joint_cross_gradient_inversion.ui.json @@ -190,7 +190,11 @@ "group": "Regularization", "association": "Cell", "dataType": "Float", - "dataGroupType": "Dip direction & dip", + "dataGroupType": [ + "Strike & dip", + "Dip direction & dip", + "3D vector" + ], "label": "Gradient rotation", "optional": true, "enabled": false, diff --git a/simpeg_drivers-assets/uijson/joint_surveys_inversion.ui.json b/simpeg_drivers-assets/uijson/joint_surveys_inversion.ui.json index 75bab905..8378a58d 100644 --- a/simpeg_drivers-assets/uijson/joint_surveys_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/joint_surveys_inversion.ui.json @@ -243,7 +243,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers-assets/uijson/magnetic_scalar_inversion.ui.json b/simpeg_drivers-assets/uijson/magnetic_scalar_inversion.ui.json index db066843..2d1cf48b 100644 --- a/simpeg_drivers-assets/uijson/magnetic_scalar_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/magnetic_scalar_inversion.ui.json @@ -539,7 +539,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers-assets/uijson/magnetic_vector_inversion.ui.json b/simpeg_drivers-assets/uijson/magnetic_vector_inversion.ui.json index 56d9e522..635b602d 100644 --- a/simpeg_drivers-assets/uijson/magnetic_vector_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/magnetic_vector_inversion.ui.json @@ -604,7 +604,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers-assets/uijson/magnetotellurics_inversion.ui.json b/simpeg_drivers-assets/uijson/magnetotellurics_inversion.ui.json index 13984b77..ca4921dd 100644 --- a/simpeg_drivers-assets/uijson/magnetotellurics_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/magnetotellurics_inversion.ui.json @@ -459,7 +459,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers-assets/uijson/tdem_inversion.ui.json b/simpeg_drivers-assets/uijson/tdem_inversion.ui.json index a04b2d45..f3ed9e77 100644 --- a/simpeg_drivers-assets/uijson/tdem_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/tdem_inversion.ui.json @@ -311,7 +311,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "parent": "mesh", diff --git a/simpeg_drivers-assets/uijson/tipper_inversion.ui.json b/simpeg_drivers-assets/uijson/tipper_inversion.ui.json index 75abce51..65c3fb4a 100644 --- a/simpeg_drivers-assets/uijson/tipper_inversion.ui.json +++ b/simpeg_drivers-assets/uijson/tipper_inversion.ui.json @@ -339,7 +339,8 @@ "dataType": "Float", "dataGroupType": [ "Strike & dip", - "Dip direction & dip" + "Dip direction & dip", + "3D vector" ], "label": "Gradient rotation", "optional": true, diff --git a/simpeg_drivers/params.py b/simpeg_drivers/params.py index db237ef9..7ea04b2f 100644 --- a/simpeg_drivers/params.py +++ b/simpeg_drivers/params.py @@ -26,12 +26,15 @@ ReferencedData, ) from geoh5py.groups import PropertyGroup, SimPEGGroup, UIJsonGroup +from geoh5py.groups.property_group_type import GroupTypeEnum from geoh5py.objects import DrapeModel, Octree, Points from geoh5py.shared.utils import fetch_active_workspace from geoh5py.ui_json import InputFile from pydantic import BaseModel, ConfigDict, field_validator, model_validator +from simpeg.utils.mat_utils import cartesian2amplitude_dip_azimuth import simpeg_drivers +from simpeg_drivers.utils.regularization import direction_and_dip logger = getLogger(__name__) @@ -371,26 +374,28 @@ class BaseInversionOptions(CoreOptions): epsilon_cooling_factor: float = 1.2 @property - def gradient_dip(self) -> np.ndarray | None: - """Gradient dip angle in clockwise radians from horizontal.""" + def gradient_orientations(self) -> tuple(float, float): + """ + Direction and dip angles for rotated gradient regularization. + + Angles are in radians and are clockwise from North for direction + and clockwise from horizontal for dip. + """ + if self.gradient_rotation is not None: - dip_uid = self.gradient_rotation.properties[1] - dips = self.geoh5.get_entity(dip_uid)[0].values - return np.deg2rad(dips) - return None + orientations = direction_and_dip(self.gradient_rotation) + + return np.deg2rad(orientations) + + return 0.0, 0.0 @property - def gradient_direction(self) -> np.ndarray | None: - """Gradient direction angle in clockwise radians from north""" - if self.gradient_rotation is not None: - from geoh5py.groups.property_group_type import GroupTypeEnum - - direction_uid = self.gradient_rotation.properties[0] - directions = self.geoh5.get_entity(direction_uid)[0].values - if self.gradient_rotation.property_group_type == GroupTypeEnum.STRIKEDIP: - directions += 90.0 - return np.deg2rad(directions) - return None + def gradient_direction(self) -> np.ndarray: + return self.gradient_orientations[:, 0] + + @property + def gradient_dip(self) -> np.ndarray: + return self.gradient_orientations[:, 1] class EMDataMixin: diff --git a/simpeg_drivers/utils/regularization.py b/simpeg_drivers/utils/regularization.py index 943760cb..cf09bdc5 100644 --- a/simpeg_drivers/utils/regularization.py +++ b/simpeg_drivers/utils/regularization.py @@ -11,8 +11,11 @@ import numpy as np import scipy.sparse as ssp from discretize import TreeMesh +from geoh5py.groups import PropertyGroup +from geoh5py.groups.property_group_type import GroupTypeEnum from simpeg.regularization import SparseSmoothness from simpeg.utils import mkvc, sdiag +from simpeg.utils.mat_utils import cartesian2amplitude_dip_azimuth def cell_neighbors_along_axis(mesh: TreeMesh, axis: str) -> np.ndarray: @@ -393,6 +396,49 @@ def rotated_gradient( return sdiag(1 / mesh.h_gridded[:, "xyz".find(axis)]) @ unit_grad +def ensure_dip_direction_convention(orientations: np.ndarray, group_type: str): + """ + Ensure orientations array has dip and direction convention. + + :param orientations: Array of orientations. Either n * 2 if Strike & dip + or Dip direction & dip group_type, or n * 3 if 3D Vector group_type. + :param group_type as specified in geoh5py.GroupTypeEnum. + """ + + if group_type == GroupTypeEnum.VECTOR: + orientations = orientations / np.c_[np.linalg.norm(orientations, axis=1)] + dip, direction = cartesian2amplitude_dip_azimuth(orientations)[:, 1:].T + dip += 90.0 + orientations = np.c_[direction, dip] + + if group_type in [GroupTypeEnum.STRIKEDIP]: + orientations[:, 0] = 90.0 + orientations[:, 0] + + return orientations + + +def direction_and_dip(property_group: PropertyGroup) -> list[np.ndarray]: + """Conversion of orientation group to direction and dip.""" + + group_type = property_group.property_group_type + if group_type not in [ + GroupTypeEnum.VECTOR, + GroupTypeEnum.STRIKEDIP, + GroupTypeEnum.DIPDIR, + ]: + raise ValueError( + "Property group does not contain orientation data. " + "Type must be one of '3D vector', 'Strike & dip', or " + "'Dip direction & dip'." + ) + + orientations = np.vstack( + [property_group.parent.get_data(k)[0].values for k in property_group.properties] + ).T + + return ensure_dip_direction_convention(orientations, group_type) + + def set_rotated_operators( function: SparseSmoothness, neighbors: np.ndarray, diff --git a/tests/run_tests/driver_rotated_gradients_test.py b/tests/run_tests/driver_rotated_gradients_test.py index 1858258a..130712f2 100644 --- a/tests/run_tests/driver_rotated_gradients_test.py +++ b/tests/run_tests/driver_rotated_gradients_test.py @@ -88,18 +88,18 @@ def test_rotated_grad_run( mesh = geoh5.get_entity("mesh")[0] # Create property group with orientation - dip = np.ones(mesh.n_cells) * 45 - azimuth = np.ones(mesh.n_cells) * 90 + i = np.ones(mesh.n_cells) + j = np.zeros(mesh.n_cells) + k = np.ones(mesh.n_cells) data_list = mesh.add_data( { - "azimuth": {"values": azimuth}, - "dip": {"values": dip}, + "i": {"values": i}, + "j": {"values": j}, + "k": {"values": k}, } ) - pg = PropertyGroup( - mesh, properties=data_list, property_group_type="Dip direction & dip" - ) + pg = PropertyGroup(mesh, properties=data_list, property_group_type="3D vector") topography = geoh5.get_entity("topography")[0] # Run the inverse diff --git a/tests/utils_regularization_test.py b/tests/utils_regularization_test.py index d0f0fefe..28b9298b 100644 --- a/tests/utils_regularization_test.py +++ b/tests/utils_regularization_test.py @@ -15,6 +15,8 @@ cell_adjacent, cell_neighbors_along_axis, collect_all_neighbors, + direction_and_dip, + ensure_dip_direction_convention, ) @@ -90,3 +92,45 @@ def test_collect_all_neighbors(): assert [15, 25, 25] in neighbor_centers assert [25, 25, 25] in neighbor_centers assert [15, 15, 15] not in neighbor_centers + + +def test_ensure_dip_direction_convention(): + # Rotate the vertical unit vector 37 degrees to the west and then 16 + # degrees counter-clockwise about the z-axis. Should result in a dip + # direction of 270 - 16 = 254 and a dip of 37. + Ry = np.array( + [ + [ + np.cos(np.deg2rad(-37)), + 0, + np.sin(np.deg2rad(-37)), + ], + [0, 1, 0], + [-np.sin(np.deg2rad(-37)), 0, np.cos(np.deg2rad(-37))], + ] + ) + Rz = np.array( + [ + [np.cos(np.deg2rad(16)), -np.sin(np.deg2rad(16)), 0], + [np.sin(np.deg2rad(16)), np.cos(np.deg2rad(16)), 0], + [0, 0, 1], + ] + ) + arbitrary_vector = Rz.dot(Ry.dot([0, 0, 1])) + + orientations = np.array( + [ + [1, 0, 1], + [0, 1, 1], + [-1, 0, 1], + [0, -1, 1], + [1, 0, np.sqrt(3)], + [0, 1, np.sqrt(3)], + [-1, 0, np.sqrt(3)], + [0, -1, np.sqrt(3)], + arbitrary_vector.tolist(), + ] + ) + dir_dip = ensure_dip_direction_convention(orientations, group_type="3D vector") + assert np.allclose(dir_dip[:, 0], [90, 0, 270, 180] * 2 + [254]) + assert np.allclose(dir_dip[:, 1], [45] * 4 + [30] * 4 + [37]) From 82d8d4aa710cd9fbd54ddd581b488ae53ceefb41 Mon Sep 17 00:00:00 2001 From: benjamink Date: Thu, 10 Apr 2025 13:05:31 -0700 Subject: [PATCH 2/8] fix tests --- simpeg_drivers/params.py | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/simpeg_drivers/params.py b/simpeg_drivers/params.py index 7ea04b2f..2adf2894 100644 --- a/simpeg_drivers/params.py +++ b/simpeg_drivers/params.py @@ -387,14 +387,18 @@ def gradient_orientations(self) -> tuple(float, float): return np.deg2rad(orientations) - return 0.0, 0.0 + return None @property def gradient_direction(self) -> np.ndarray: + if self.gradient_orientations is None: + return 0.0 return self.gradient_orientations[:, 0] @property def gradient_dip(self) -> np.ndarray: + if self.gradient_orientations is None: + return 0.0 return self.gradient_orientations[:, 1] From c26491920352abcca77304aecfc0e78e7592c9a0 Mon Sep 17 00:00:00 2001 From: benjamink Date: Fri, 11 Apr 2025 08:17:06 -0700 Subject: [PATCH 3/8] fix tests --- simpeg_drivers/params.py | 4 ++-- tests/run_tests/driver_joint_cross_gradient_test.py | 1 - tests/run_tests/driver_joint_surveys_test.py | 1 - 3 files changed, 2 insertions(+), 4 deletions(-) diff --git a/simpeg_drivers/params.py b/simpeg_drivers/params.py index 2adf2894..3897d670 100644 --- a/simpeg_drivers/params.py +++ b/simpeg_drivers/params.py @@ -392,13 +392,13 @@ def gradient_orientations(self) -> tuple(float, float): @property def gradient_direction(self) -> np.ndarray: if self.gradient_orientations is None: - return 0.0 + return None return self.gradient_orientations[:, 0] @property def gradient_dip(self) -> np.ndarray: if self.gradient_orientations is None: - return 0.0 + return None return self.gradient_orientations[:, 1] diff --git a/tests/run_tests/driver_joint_cross_gradient_test.py b/tests/run_tests/driver_joint_cross_gradient_test.py index 4e36ec7b..dd609a54 100644 --- a/tests/run_tests/driver_joint_cross_gradient_test.py +++ b/tests/run_tests/driver_joint_cross_gradient_test.py @@ -260,7 +260,6 @@ def test_joint_cross_gradient_inv_run( x_norm=0.0, y_norm=0.0, z_norm=0.0, - gradient_type="components", percentile=100, store_sensitivities="ram", ) diff --git a/tests/run_tests/driver_joint_surveys_test.py b/tests/run_tests/driver_joint_surveys_test.py index 38228676..579e39c3 100644 --- a/tests/run_tests/driver_joint_surveys_test.py +++ b/tests/run_tests/driver_joint_surveys_test.py @@ -154,7 +154,6 @@ def test_joint_surveys_inv_run( x_norm=0.0, y_norm=0.0, z_norm=0.0, - gradient_type="components", lower_bound=0.0, max_global_iterations=max_iterations, initial_beta_ratio=1e-2, From 55aa21fd2b511181fa9deeef1b21de674f3a97bf Mon Sep 17 00:00:00 2001 From: benk-mira <81254271+benk-mira@users.noreply.github.com> Date: Tue, 15 Apr 2025 08:31:57 -0700 Subject: [PATCH 4/8] Update simpeg_drivers/utils/regularization.py Co-authored-by: domfournier --- simpeg_drivers/utils/regularization.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/simpeg_drivers/utils/regularization.py b/simpeg_drivers/utils/regularization.py index cf09bdc5..1b9e894c 100644 --- a/simpeg_drivers/utils/regularization.py +++ b/simpeg_drivers/utils/regularization.py @@ -401,7 +401,7 @@ def ensure_dip_direction_convention(orientations: np.ndarray, group_type: str): Ensure orientations array has dip and direction convention. :param orientations: Array of orientations. Either n * 2 if Strike & dip - or Dip direction & dip group_type, or n * 3 if 3D Vector group_type. + or Dip direction & dip group_type, or n * 3 if 3D Vector group_type defining the normal of the dipping plane. :param group_type as specified in geoh5py.GroupTypeEnum. """ From 1c9c9fd1c14000b36efbe6731a07284e24adc29b Mon Sep 17 00:00:00 2001 From: benjamink Date: Tue, 15 Apr 2025 14:11:05 -0700 Subject: [PATCH 5/8] dom's comments --- simpeg_drivers/utils/regularization.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/simpeg_drivers/utils/regularization.py b/simpeg_drivers/utils/regularization.py index 1b9e894c..494bb405 100644 --- a/simpeg_drivers/utils/regularization.py +++ b/simpeg_drivers/utils/regularization.py @@ -396,7 +396,9 @@ def rotated_gradient( return sdiag(1 / mesh.h_gridded[:, "xyz".find(axis)]) @ unit_grad -def ensure_dip_direction_convention(orientations: np.ndarray, group_type: str): +def ensure_dip_direction_convention( + orientations: np.ndarray, group_type: str +) -> np.ndarray: """ Ensure orientations array has dip and direction convention. From 1ce260628b6182c116bf58456eb96bcb02fc52e4 Mon Sep 17 00:00:00 2001 From: benjamink Date: Fri, 18 Apr 2025 11:37:34 -0700 Subject: [PATCH 6/8] Update to confine the 3d vector conversions to direction and dip within th eastern hemisphere --- simpeg_drivers/utils/regularization.py | 7 ++----- tests/utils_regularization_test.py | 4 ++-- 2 files changed, 4 insertions(+), 7 deletions(-) diff --git a/simpeg_drivers/utils/regularization.py b/simpeg_drivers/utils/regularization.py index 494bb405..a365ae37 100644 --- a/simpeg_drivers/utils/regularization.py +++ b/simpeg_drivers/utils/regularization.py @@ -11,11 +11,11 @@ import numpy as np import scipy.sparse as ssp from discretize import TreeMesh +from geoapps_utils.utils.transformations import normal_to_direction_and_dip from geoh5py.groups import PropertyGroup from geoh5py.groups.property_group_type import GroupTypeEnum from simpeg.regularization import SparseSmoothness from simpeg.utils import mkvc, sdiag -from simpeg.utils.mat_utils import cartesian2amplitude_dip_azimuth def cell_neighbors_along_axis(mesh: TreeMesh, axis: str) -> np.ndarray: @@ -408,10 +408,7 @@ def ensure_dip_direction_convention( """ if group_type == GroupTypeEnum.VECTOR: - orientations = orientations / np.c_[np.linalg.norm(orientations, axis=1)] - dip, direction = cartesian2amplitude_dip_azimuth(orientations)[:, 1:].T - dip += 90.0 - orientations = np.c_[direction, dip] + orientations = np.rad2deg(normal_to_direction_and_dip(orientations)) if group_type in [GroupTypeEnum.STRIKEDIP]: orientations[:, 0] = 90.0 + orientations[:, 0] diff --git a/tests/utils_regularization_test.py b/tests/utils_regularization_test.py index 28b9298b..70d1963e 100644 --- a/tests/utils_regularization_test.py +++ b/tests/utils_regularization_test.py @@ -132,5 +132,5 @@ def test_ensure_dip_direction_convention(): ] ) dir_dip = ensure_dip_direction_convention(orientations, group_type="3D vector") - assert np.allclose(dir_dip[:, 0], [90, 0, 270, 180] * 2 + [254]) - assert np.allclose(dir_dip[:, 1], [45] * 4 + [30] * 4 + [37]) + assert np.allclose(dir_dip[:, 0], [90, 0, 90, 180] * 2 + [74]) + assert np.allclose(dir_dip[:, 1], [45] * 4 + [30] * 4 + [-37]) From 5d65459540790deb2b07f4f6e11277352d5719bb Mon Sep 17 00:00:00 2001 From: benjamink Date: Mon, 5 May 2025 12:44:59 -0700 Subject: [PATCH 7/8] update with geoapps-utils rotations --- simpeg_drivers/utils/regularization.py | 25 ++++++++----------------- tests/utils_regularization_test.py | 4 ++-- 2 files changed, 10 insertions(+), 19 deletions(-) diff --git a/simpeg_drivers/utils/regularization.py b/simpeg_drivers/utils/regularization.py index a365ae37..c42a28a2 100644 --- a/simpeg_drivers/utils/regularization.py +++ b/simpeg_drivers/utils/regularization.py @@ -11,7 +11,11 @@ import numpy as np import scipy.sparse as ssp from discretize import TreeMesh -from geoapps_utils.utils.transformations import normal_to_direction_and_dip +from geoapps_utils.utils.transformations import ( + cartesian_normal_to_direction_and_dip, + x_rotation_matrix, + z_rotation_matrix, +) from geoh5py.groups import PropertyGroup from geoh5py.groups.property_group_type import GroupTypeEnum from simpeg.regularization import SparseSmoothness @@ -194,18 +198,11 @@ def rotate_yz_3d(mesh: TreeMesh, theta: np.ndarray) -> ssp.csr_matrix: :param theta: Angle in radians for clockwise rotation about the x-axis (yz plane). """ - - n_cells = len(theta) hy = mesh.h_gridded[:, 1] hz = mesh.h_gridded[:, 2] theta = -np.arctan2((np.sin(theta) / hz), (np.cos(theta) / hy)) - rxa = mkvc(np.c_[np.ones(n_cells), np.cos(theta), np.cos(theta)].T) - rxb = mkvc(np.c_[np.zeros(n_cells), np.sin(theta), np.zeros(n_cells)].T) - rxc = mkvc(np.c_[np.zeros(n_cells), -np.sin(theta), np.zeros(n_cells)].T) - Rx = ssp.diags([rxb[:-1], rxa, rxc[:-1]], [-1, 0, 1]) - - return Rx + return x_rotation_matrix(theta) def rotate_xy_3d(mesh: TreeMesh, phi: np.ndarray) -> ssp.csr_matrix: @@ -217,17 +214,11 @@ def rotate_xy_3d(mesh: TreeMesh, phi: np.ndarray) -> ssp.csr_matrix: :param phi: Angle in radians for clockwise rotation about the z-axis (xy plane). """ - n_cells = len(phi) hx = mesh.h_gridded[:, 0] hy = mesh.h_gridded[:, 1] phi = -np.arctan2((np.sin(phi) / hy), (np.cos(phi) / hx)) - rza = mkvc(np.c_[np.cos(phi), np.cos(phi), np.ones(n_cells)].T) - rzb = mkvc(np.c_[np.sin(phi), np.zeros(n_cells), np.zeros(n_cells)].T) - rzc = mkvc(np.c_[-np.sin(phi), np.zeros(n_cells), np.zeros(n_cells)].T) - Rz = ssp.diags([rzb[:-1], rza, rzc[:-1]], [-1, 0, 1]) - - return Rz + return z_rotation_matrix(phi) def get_cell_normals(n_cells: int, axis: str, outward: bool) -> np.ndarray: @@ -408,7 +399,7 @@ def ensure_dip_direction_convention( """ if group_type == GroupTypeEnum.VECTOR: - orientations = np.rad2deg(normal_to_direction_and_dip(orientations)) + orientations = np.rad2deg(cartesian_normal_to_direction_and_dip(orientations)) if group_type in [GroupTypeEnum.STRIKEDIP]: orientations[:, 0] = 90.0 + orientations[:, 0] diff --git a/tests/utils_regularization_test.py b/tests/utils_regularization_test.py index 70d1963e..28b9298b 100644 --- a/tests/utils_regularization_test.py +++ b/tests/utils_regularization_test.py @@ -132,5 +132,5 @@ def test_ensure_dip_direction_convention(): ] ) dir_dip = ensure_dip_direction_convention(orientations, group_type="3D vector") - assert np.allclose(dir_dip[:, 0], [90, 0, 90, 180] * 2 + [74]) - assert np.allclose(dir_dip[:, 1], [45] * 4 + [30] * 4 + [-37]) + assert np.allclose(dir_dip[:, 0], [90, 0, 270, 180] * 2 + [254]) + assert np.allclose(dir_dip[:, 1], [45] * 4 + [30] * 4 + [37]) From aef74e8a43d6bdcff56cfc937f79f2e4835b71a2 Mon Sep 17 00:00:00 2001 From: benjamink Date: Mon, 5 May 2025 13:12:35 -0700 Subject: [PATCH 8/8] update lock files --- .../py-3.10-linux-64-dev.conda.lock.yml | 26 +- environments/py-3.10-linux-64.conda.lock.yml | 20 +- .../py-3.10-win-64-dev.conda.lock.yml | 26 +- environments/py-3.10-win-64.conda.lock.yml | 20 +- .../py-3.11-linux-64-dev.conda.lock.yml | 26 +- environments/py-3.11-linux-64.conda.lock.yml | 20 +- .../py-3.11-win-64-dev.conda.lock.yml | 26 +- environments/py-3.11-win-64.conda.lock.yml | 20 +- .../py-3.12-linux-64-dev.conda.lock.yml | 26 +- environments/py-3.12-linux-64.conda.lock.yml | 20 +- .../py-3.12-win-64-dev.conda.lock.yml | 26 +- environments/py-3.12-win-64.conda.lock.yml | 20 +- py-3.10.conda-lock.yml | 1312 ++++++++-------- py-3.11.conda-lock.yml | 1362 ++++++++--------- py-3.12.conda-lock.yml | 1362 ++++++++--------- 15 files changed, 2153 insertions(+), 2159 deletions(-) diff --git a/environments/py-3.10-linux-64-dev.conda.lock.yml b/environments/py-3.10-linux-64-dev.conda.lock.yml index 538789e3..b59c8102 100644 --- a/environments/py-3.10-linux-64-dev.conda.lock.yml +++ b/environments/py-3.10-linux-64-dev.conda.lock.yml @@ -34,7 +34,7 @@ dependencies: - cached_property=1.5.2=pyha770c72_1 - certifi=2025.1.31=pyhd8ed1ab_0 - cffi=1.17.1=py310h8deb56e_0 - - charset-normalizer=3.4.1=pyhd8ed1ab_0 + - charset-normalizer=3.4.2=pyhd8ed1ab_0 - click=8.1.8=pyh707e725_0 - cloudpickle=3.1.1=pyhd8ed1ab_0 - colorama=0.4.6=pyhd8ed1ab_1 @@ -63,8 +63,8 @@ dependencies: - greenlet=3.2.1=py310hf71b8c6_0 - h11=0.16.0=pyhd8ed1ab_0 - h2=4.2.0=pyhd8ed1ab_0 - - h5py=3.13.0=nompi_py310h60e0fe6_100 - - hdf5=1.14.3=nompi_h2d575fe_109 + - h5py=3.13.0=nompi_py310h2a0e991_101 + - hdf5=1.14.6=nompi_h2d575fe_101 - hpack=4.1.0=pyhd8ed1ab_0 - httpcore=1.0.9=pyh29332c3_0 - httpx=0.28.1=pyhd8ed1ab_0 @@ -80,10 +80,10 @@ dependencies: - ipython_genutils=0.2.0=pyhd8ed1ab_2 - ipywidgets=7.8.5=pyhd8ed1ab_0 - isoduration=20.11.0=pyhd8ed1ab_1 - - isort=6.0.1=pyhd8ed1ab_0 + - isort=6.0.1=pyhd8ed1ab_1 - jedi=0.19.2=pyhd8ed1ab_1 - jinja2=3.1.6=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_1 + - joblib=1.5.0=pyhd8ed1ab_0 - json5=0.12.0=pyhd8ed1ab_0 - jsonpointer=3.0.0=py310hff52083_1 - jsonschema=4.23.0=pyhd8ed1ab_1 @@ -180,7 +180,7 @@ dependencies: - numcodecs=0.13.1=py310h5eaa309_0 - numpy=1.26.4=py310hb13e2d6_0 - openjpeg=2.5.3=h5fbd93e_0 - - openssl=3.5.0=h7b32b05_0 + - openssl=3.5.0=h7b32b05_1 - overrides=7.7.0=pyhd8ed1ab_1 - packaging=25.0=pyh29332c3_1 - pandas=2.2.3=py310h5eaa309_3 @@ -191,7 +191,7 @@ dependencies: - pexpect=4.9.0=pyhd8ed1ab_1 - pickleshare=0.7.5=pyhd8ed1ab_1004 - pillow=10.3.0=py310hebfe307_1 - - pip=25.1=pyh8b19718_0 + - pip=25.1.1=pyh8b19718_0 - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_2 - platformdirs=4.3.7=pyh29332c3_0 - pluggy=1.5.0=pyhd8ed1ab_1 @@ -209,7 +209,7 @@ dependencies: - pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0 - pydiso=0.1.2=py310h69a6472_0 - pygments=2.19.1=pyhd8ed1ab_0 - - pylint=3.3.6=pyh29332c3_0 + - pylint=3.3.7=pyhe01879c_0 - pymatsolver=0.3.1=pyh48887ae_201 - pyparsing=3.2.3=pyhd8ed1ab_1 - pysocks=1.7.1=pyha55dd90_7 @@ -301,11 +301,11 @@ dependencies: - zstandard=0.23.0=py310ha75aee5_2 - zstd=1.5.7=hb8e6e7a_2 - pip: - - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6e21320c89581dccb1635d8460dfe296ec41b6da - - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 - - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 - - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca - - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 + - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@7b76c8132fa01d3007b883326a817a8d1e17cfc3 + - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 + - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 + - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca + - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 variables: KMP_WARNINGS: 0 diff --git a/environments/py-3.10-linux-64.conda.lock.yml b/environments/py-3.10-linux-64.conda.lock.yml index 779809d1..273e5490 100644 --- a/environments/py-3.10-linux-64.conda.lock.yml +++ b/environments/py-3.10-linux-64.conda.lock.yml @@ -35,13 +35,13 @@ dependencies: - fsspec=2025.3.2=pyhd8ed1ab_0 - geoana=0.7.2=py310ha2bacc8_0 - h2=4.2.0=pyhd8ed1ab_0 - - h5py=3.13.0=nompi_py310h60e0fe6_100 - - hdf5=1.14.3=nompi_h2d575fe_109 + - h5py=3.13.0=nompi_py310h2a0e991_101 + - hdf5=1.14.6=nompi_h2d575fe_101 - hpack=4.1.0=pyhd8ed1ab_0 - hyperframe=6.1.0=pyhd8ed1ab_0 - importlib-metadata=8.6.1=pyha770c72_0 - jinja2=3.1.6=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_1 + - joblib=1.5.0=pyhd8ed1ab_0 - keyutils=1.6.1=h166bdaf_0 - kiwisolver=1.4.7=py310h3788b33_0 - krb5=1.21.3=h659f571_0 @@ -101,12 +101,12 @@ dependencies: - numcodecs=0.13.1=py310h5eaa309_0 - numpy=1.26.4=py310hb13e2d6_0 - openjpeg=2.5.3=h5fbd93e_0 - - openssl=3.5.0=h7b32b05_0 + - openssl=3.5.0=h7b32b05_1 - packaging=25.0=pyh29332c3_1 - pandas=2.2.3=py310h5eaa309_3 - partd=1.4.2=pyhd8ed1ab_0 - pillow=10.3.0=py310hebfe307_1 - - pip=25.1=pyh8b19718_0 + - pip=25.1.1=pyh8b19718_0 - psutil=7.0.0=py310ha75aee5_0 - pthread-stubs=0.4=hb9d3cd8_1002 - pycparser=2.22=pyh29332c3_1 @@ -153,11 +153,11 @@ dependencies: - zstandard=0.23.0=py310ha75aee5_2 - zstd=1.5.7=hb8e6e7a_2 - pip: - - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6e21320c89581dccb1635d8460dfe296ec41b6da - - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 - - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 - - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca - - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 + - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@7b76c8132fa01d3007b883326a817a8d1e17cfc3 + - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 + - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 + - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca + - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 variables: KMP_WARNINGS: 0 diff --git a/environments/py-3.10-win-64-dev.conda.lock.yml b/environments/py-3.10-win-64-dev.conda.lock.yml index a061b906..fe8ec290 100644 --- a/environments/py-3.10-win-64-dev.conda.lock.yml +++ b/environments/py-3.10-win-64-dev.conda.lock.yml @@ -33,7 +33,7 @@ dependencies: - cached_property=1.5.2=pyha770c72_1 - certifi=2025.1.31=pyhd8ed1ab_0 - cffi=1.17.1=py310ha8f682b_0 - - charset-normalizer=3.4.1=pyhd8ed1ab_0 + - charset-normalizer=3.4.2=pyhd8ed1ab_0 - click=8.1.8=pyh7428d3b_0 - cloudpickle=3.1.1=pyhd8ed1ab_0 - colorama=0.4.6=pyhd8ed1ab_1 @@ -63,8 +63,8 @@ dependencies: - greenlet=3.2.1=py310h9e98ed7_0 - h11=0.16.0=pyhd8ed1ab_0 - h2=4.2.0=pyhd8ed1ab_0 - - h5py=3.13.0=nompi_py310h2b0be38_100 - - hdf5=1.14.3=nompi_hb2c4d47_109 + - h5py=3.13.0=nompi_py310hd6dd405_101 + - hdf5=1.14.6=nompi_hd5d9e70_101 - hpack=4.1.0=pyhd8ed1ab_0 - httpcore=1.0.9=pyh29332c3_0 - httpx=0.28.1=pyhd8ed1ab_0 @@ -81,10 +81,10 @@ dependencies: - ipython_genutils=0.2.0=pyhd8ed1ab_2 - ipywidgets=7.8.5=pyhd8ed1ab_0 - isoduration=20.11.0=pyhd8ed1ab_1 - - isort=6.0.1=pyhd8ed1ab_0 + - isort=6.0.1=pyhd8ed1ab_1 - jedi=0.19.2=pyhd8ed1ab_1 - jinja2=3.1.6=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_1 + - joblib=1.5.0=pyhd8ed1ab_0 - json5=0.12.0=pyhd8ed1ab_0 - jsonpointer=3.0.0=py310h5588dad_1 - jsonschema=4.23.0=pyhd8ed1ab_1 @@ -166,7 +166,7 @@ dependencies: - numcodecs=0.13.1=py310hb4db72f_0 - numpy=1.26.4=py310hf667824_0 - openjpeg=2.5.3=h4d64b90_0 - - openssl=3.5.0=ha4e3fda_0 + - openssl=3.5.0=ha4e3fda_1 - overrides=7.7.0=pyhd8ed1ab_1 - packaging=25.0=pyh29332c3_1 - pandas=2.2.3=py310hb4db72f_3 @@ -176,7 +176,7 @@ dependencies: - partd=1.4.2=pyhd8ed1ab_0 - pickleshare=0.7.5=pyhd8ed1ab_1004 - pillow=10.3.0=py310h3e38d90_1 - - pip=25.1=pyh8b19718_0 + - pip=25.1.1=pyh8b19718_0 - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_2 - platformdirs=4.3.7=pyh29332c3_0 - pluggy=1.5.0=pyhd8ed1ab_1 @@ -193,7 +193,7 @@ dependencies: - pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0 - pydiso=0.1.2=py310h8f92c26_0 - pygments=2.19.1=pyhd8ed1ab_0 - - pylint=3.3.6=pyh29332c3_0 + - pylint=3.3.7=pyhe01879c_0 - pymatsolver=0.3.1=pyh48887ae_201 - pyparsing=3.2.3=pyhd8ed1ab_1 - pysocks=1.7.1=pyh09c184e_7 @@ -292,11 +292,11 @@ dependencies: - zstandard=0.23.0=py310ha8f682b_2 - zstd=1.5.7=hbeecb71_2 - pip: - - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6e21320c89581dccb1635d8460dfe296ec41b6da - - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 - - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 - - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca - - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 + - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@7b76c8132fa01d3007b883326a817a8d1e17cfc3 + - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 + - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 + - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca + - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 variables: KMP_WARNINGS: 0 diff --git a/environments/py-3.10-win-64.conda.lock.yml b/environments/py-3.10-win-64.conda.lock.yml index 8d5a06cc..98845a3e 100644 --- a/environments/py-3.10-win-64.conda.lock.yml +++ b/environments/py-3.10-win-64.conda.lock.yml @@ -34,14 +34,14 @@ dependencies: - fsspec=2025.3.2=pyhd8ed1ab_0 - geoana=0.7.2=py310h3e8ed56_0 - h2=4.2.0=pyhd8ed1ab_0 - - h5py=3.13.0=nompi_py310h2b0be38_100 - - hdf5=1.14.3=nompi_hb2c4d47_109 + - h5py=3.13.0=nompi_py310hd6dd405_101 + - hdf5=1.14.6=nompi_hd5d9e70_101 - hpack=4.1.0=pyhd8ed1ab_0 - hyperframe=6.1.0=pyhd8ed1ab_0 - importlib-metadata=8.6.1=pyha770c72_0 - intel-openmp=2024.2.1=h57928b3_1083 - jinja2=3.1.6=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_1 + - joblib=1.5.0=pyhd8ed1ab_0 - kiwisolver=1.4.7=py310hc19bc0b_0 - krb5=1.21.3=hdf4eb48_0 - lcms2=2.17=hbcf6048_0 @@ -86,12 +86,12 @@ dependencies: - numcodecs=0.13.1=py310hb4db72f_0 - numpy=1.26.4=py310hf667824_0 - openjpeg=2.5.3=h4d64b90_0 - - openssl=3.5.0=ha4e3fda_0 + - openssl=3.5.0=ha4e3fda_1 - packaging=25.0=pyh29332c3_1 - pandas=2.2.3=py310hb4db72f_3 - partd=1.4.2=pyhd8ed1ab_0 - pillow=10.3.0=py310h3e38d90_1 - - pip=25.1=pyh8b19718_0 + - pip=25.1.1=pyh8b19718_0 - psutil=7.0.0=py310ha8f682b_0 - pthread-stubs=0.4=h0e40799_1002 - pycparser=2.22=pyh29332c3_1 @@ -142,11 +142,11 @@ dependencies: - zstandard=0.23.0=py310ha8f682b_2 - zstd=1.5.7=hbeecb71_2 - pip: - - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6e21320c89581dccb1635d8460dfe296ec41b6da - - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 - - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 - - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca - - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 + - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@7b76c8132fa01d3007b883326a817a8d1e17cfc3 + - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 + - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 + - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca + - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 variables: KMP_WARNINGS: 0 diff --git a/environments/py-3.11-linux-64-dev.conda.lock.yml b/environments/py-3.11-linux-64-dev.conda.lock.yml index 7e3c7979..4d7ac0e9 100644 --- a/environments/py-3.11-linux-64-dev.conda.lock.yml +++ b/environments/py-3.11-linux-64-dev.conda.lock.yml @@ -34,7 +34,7 @@ dependencies: - cached_property=1.5.2=pyha770c72_1 - certifi=2025.1.31=pyhd8ed1ab_0 - cffi=1.17.1=py311hf29c0ef_0 - - charset-normalizer=3.4.1=pyhd8ed1ab_0 + - charset-normalizer=3.4.2=pyhd8ed1ab_0 - click=8.1.8=pyh707e725_0 - cloudpickle=3.1.1=pyhd8ed1ab_0 - colorama=0.4.6=pyhd8ed1ab_1 @@ -64,8 +64,8 @@ dependencies: - greenlet=3.2.1=py311hfdbb021_0 - h11=0.16.0=pyhd8ed1ab_0 - h2=4.2.0=pyhd8ed1ab_0 - - h5py=3.13.0=nompi_py311hb639ac4_100 - - hdf5=1.14.3=nompi_h2d575fe_109 + - h5py=3.13.0=nompi_py311h38436b4_101 + - hdf5=1.14.6=nompi_h2d575fe_101 - hpack=4.1.0=pyhd8ed1ab_0 - httpcore=1.0.9=pyh29332c3_0 - httpx=0.28.1=pyhd8ed1ab_0 @@ -82,10 +82,10 @@ dependencies: - ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0 - ipywidgets=7.8.5=pyhd8ed1ab_0 - isoduration=20.11.0=pyhd8ed1ab_1 - - isort=6.0.1=pyhd8ed1ab_0 + - isort=6.0.1=pyhd8ed1ab_1 - jedi=0.19.2=pyhd8ed1ab_1 - jinja2=3.1.6=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_1 + - joblib=1.5.0=pyhd8ed1ab_0 - json5=0.12.0=pyhd8ed1ab_0 - jsonpointer=3.0.0=py311h38be061_1 - jsonschema=4.23.0=pyhd8ed1ab_1 @@ -182,7 +182,7 @@ dependencies: - numcodecs=0.15.1=py311h7db5c69_0 - numpy=1.26.4=py311h64a7726_0 - openjpeg=2.5.3=h5fbd93e_0 - - openssl=3.5.0=h7b32b05_0 + - openssl=3.5.0=h7b32b05_1 - overrides=7.7.0=pyhd8ed1ab_1 - packaging=25.0=pyh29332c3_1 - pandas=2.2.3=py311h7db5c69_3 @@ -193,7 +193,7 @@ dependencies: - pexpect=4.9.0=pyhd8ed1ab_1 - pickleshare=0.7.5=pyhd8ed1ab_1004 - pillow=10.3.0=py311h82a398c_1 - - pip=25.1=pyh8b19718_0 + - pip=25.1.1=pyh8b19718_0 - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_2 - platformdirs=4.3.7=pyh29332c3_0 - pluggy=1.5.0=pyhd8ed1ab_1 @@ -211,7 +211,7 @@ dependencies: - pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0 - pydiso=0.1.2=py311h19ea254_0 - pygments=2.19.1=pyhd8ed1ab_0 - - pylint=3.3.6=pyh29332c3_0 + - pylint=3.3.7=pyhe01879c_0 - pymatsolver=0.3.1=pyh48887ae_201 - pyparsing=3.2.3=pyhd8ed1ab_1 - pysocks=1.7.1=pyha55dd90_7 @@ -304,11 +304,11 @@ dependencies: - zstandard=0.23.0=py311h9ecbd09_2 - zstd=1.5.7=hb8e6e7a_2 - pip: - - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6e21320c89581dccb1635d8460dfe296ec41b6da - - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 - - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 - - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca - - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 + - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@7b76c8132fa01d3007b883326a817a8d1e17cfc3 + - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 + - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 + - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca + - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 variables: KMP_WARNINGS: 0 diff --git a/environments/py-3.11-linux-64.conda.lock.yml b/environments/py-3.11-linux-64.conda.lock.yml index ee3d9d4e..97c3999d 100644 --- a/environments/py-3.11-linux-64.conda.lock.yml +++ b/environments/py-3.11-linux-64.conda.lock.yml @@ -36,13 +36,13 @@ dependencies: - fsspec=2025.3.2=pyhd8ed1ab_0 - geoana=0.7.2=py311h5b7b71f_0 - h2=4.2.0=pyhd8ed1ab_0 - - h5py=3.13.0=nompi_py311hb639ac4_100 - - hdf5=1.14.3=nompi_h2d575fe_109 + - h5py=3.13.0=nompi_py311h38436b4_101 + - hdf5=1.14.6=nompi_h2d575fe_101 - hpack=4.1.0=pyhd8ed1ab_0 - hyperframe=6.1.0=pyhd8ed1ab_0 - importlib-metadata=8.6.1=pyha770c72_0 - jinja2=3.1.6=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_1 + - joblib=1.5.0=pyhd8ed1ab_0 - keyutils=1.6.1=h166bdaf_0 - kiwisolver=1.4.7=py311hd18a35c_0 - krb5=1.21.3=h659f571_0 @@ -102,12 +102,12 @@ dependencies: - numcodecs=0.15.1=py311h7db5c69_0 - numpy=1.26.4=py311h64a7726_0 - openjpeg=2.5.3=h5fbd93e_0 - - openssl=3.5.0=h7b32b05_0 + - openssl=3.5.0=h7b32b05_1 - packaging=25.0=pyh29332c3_1 - pandas=2.2.3=py311h7db5c69_3 - partd=1.4.2=pyhd8ed1ab_0 - pillow=10.3.0=py311h82a398c_1 - - pip=25.1=pyh8b19718_0 + - pip=25.1.1=pyh8b19718_0 - psutil=7.0.0=py311h9ecbd09_0 - pthread-stubs=0.4=hb9d3cd8_1002 - pycparser=2.22=pyh29332c3_1 @@ -155,11 +155,11 @@ dependencies: - zstandard=0.23.0=py311h9ecbd09_2 - zstd=1.5.7=hb8e6e7a_2 - pip: - - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6e21320c89581dccb1635d8460dfe296ec41b6da - - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 - - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 - - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca - - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 + - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@7b76c8132fa01d3007b883326a817a8d1e17cfc3 + - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 + - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 + - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca + - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 variables: KMP_WARNINGS: 0 diff --git a/environments/py-3.11-win-64-dev.conda.lock.yml b/environments/py-3.11-win-64-dev.conda.lock.yml index cd49ffc5..e2e1832b 100644 --- a/environments/py-3.11-win-64-dev.conda.lock.yml +++ b/environments/py-3.11-win-64-dev.conda.lock.yml @@ -33,7 +33,7 @@ dependencies: - cached_property=1.5.2=pyha770c72_1 - certifi=2025.1.31=pyhd8ed1ab_0 - cffi=1.17.1=py311he736701_0 - - charset-normalizer=3.4.1=pyhd8ed1ab_0 + - charset-normalizer=3.4.2=pyhd8ed1ab_0 - click=8.1.8=pyh7428d3b_0 - cloudpickle=3.1.1=pyhd8ed1ab_0 - colorama=0.4.6=pyhd8ed1ab_1 @@ -64,8 +64,8 @@ dependencies: - greenlet=3.2.1=py311hda3d55a_0 - h11=0.16.0=pyhd8ed1ab_0 - h2=4.2.0=pyhd8ed1ab_0 - - h5py=3.13.0=nompi_py311h67016bb_100 - - hdf5=1.14.3=nompi_hb2c4d47_109 + - h5py=3.13.0=nompi_py311hc74fd12_101 + - hdf5=1.14.6=nompi_hd5d9e70_101 - hpack=4.1.0=pyhd8ed1ab_0 - httpcore=1.0.9=pyh29332c3_0 - httpx=0.28.1=pyhd8ed1ab_0 @@ -83,10 +83,10 @@ dependencies: - ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0 - ipywidgets=7.8.5=pyhd8ed1ab_0 - isoduration=20.11.0=pyhd8ed1ab_1 - - isort=6.0.1=pyhd8ed1ab_0 + - isort=6.0.1=pyhd8ed1ab_1 - jedi=0.19.2=pyhd8ed1ab_1 - jinja2=3.1.6=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_1 + - joblib=1.5.0=pyhd8ed1ab_0 - json5=0.12.0=pyhd8ed1ab_0 - jsonpointer=3.0.0=py311h1ea47a8_1 - jsonschema=4.23.0=pyhd8ed1ab_1 @@ -168,7 +168,7 @@ dependencies: - numcodecs=0.15.1=py311hcf9f919_0 - numpy=1.26.4=py311h0b4df5a_0 - openjpeg=2.5.3=h4d64b90_0 - - openssl=3.5.0=ha4e3fda_0 + - openssl=3.5.0=ha4e3fda_1 - overrides=7.7.0=pyhd8ed1ab_1 - packaging=25.0=pyh29332c3_1 - pandas=2.2.3=py311hcf9f919_3 @@ -178,7 +178,7 @@ dependencies: - partd=1.4.2=pyhd8ed1ab_0 - pickleshare=0.7.5=pyhd8ed1ab_1004 - pillow=10.3.0=py311h5592be9_1 - - pip=25.1=pyh8b19718_0 + - pip=25.1.1=pyh8b19718_0 - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_2 - platformdirs=4.3.7=pyh29332c3_0 - pluggy=1.5.0=pyhd8ed1ab_1 @@ -195,7 +195,7 @@ dependencies: - pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0 - pydiso=0.1.2=py311h66870c1_0 - pygments=2.19.1=pyhd8ed1ab_0 - - pylint=3.3.6=pyh29332c3_0 + - pylint=3.3.7=pyhe01879c_0 - pymatsolver=0.3.1=pyh48887ae_201 - pyparsing=3.2.3=pyhd8ed1ab_1 - pysocks=1.7.1=pyh09c184e_7 @@ -295,11 +295,11 @@ dependencies: - zstandard=0.23.0=py311he736701_2 - zstd=1.5.7=hbeecb71_2 - pip: - - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6e21320c89581dccb1635d8460dfe296ec41b6da - - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 - - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 - - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca - - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 + - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@7b76c8132fa01d3007b883326a817a8d1e17cfc3 + - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 + - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 + - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca + - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 variables: KMP_WARNINGS: 0 diff --git a/environments/py-3.11-win-64.conda.lock.yml b/environments/py-3.11-win-64.conda.lock.yml index f541b825..adbb39bd 100644 --- a/environments/py-3.11-win-64.conda.lock.yml +++ b/environments/py-3.11-win-64.conda.lock.yml @@ -35,14 +35,14 @@ dependencies: - fsspec=2025.3.2=pyhd8ed1ab_0 - geoana=0.7.2=py311h9b10771_0 - h2=4.2.0=pyhd8ed1ab_0 - - h5py=3.13.0=nompi_py311h67016bb_100 - - hdf5=1.14.3=nompi_hb2c4d47_109 + - h5py=3.13.0=nompi_py311hc74fd12_101 + - hdf5=1.14.6=nompi_hd5d9e70_101 - hpack=4.1.0=pyhd8ed1ab_0 - hyperframe=6.1.0=pyhd8ed1ab_0 - importlib-metadata=8.6.1=pyha770c72_0 - intel-openmp=2024.2.1=h57928b3_1083 - jinja2=3.1.6=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_1 + - joblib=1.5.0=pyhd8ed1ab_0 - kiwisolver=1.4.7=py311h3257749_0 - krb5=1.21.3=hdf4eb48_0 - lcms2=2.17=hbcf6048_0 @@ -87,12 +87,12 @@ dependencies: - numcodecs=0.15.1=py311hcf9f919_0 - numpy=1.26.4=py311h0b4df5a_0 - openjpeg=2.5.3=h4d64b90_0 - - openssl=3.5.0=ha4e3fda_0 + - openssl=3.5.0=ha4e3fda_1 - packaging=25.0=pyh29332c3_1 - pandas=2.2.3=py311hcf9f919_3 - partd=1.4.2=pyhd8ed1ab_0 - pillow=10.3.0=py311h5592be9_1 - - pip=25.1=pyh8b19718_0 + - pip=25.1.1=pyh8b19718_0 - psutil=7.0.0=py311he736701_0 - pthread-stubs=0.4=h0e40799_1002 - pycparser=2.22=pyh29332c3_1 @@ -144,11 +144,11 @@ dependencies: - zstandard=0.23.0=py311he736701_2 - zstd=1.5.7=hbeecb71_2 - pip: - - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6e21320c89581dccb1635d8460dfe296ec41b6da - - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 - - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 - - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca - - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 + - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@7b76c8132fa01d3007b883326a817a8d1e17cfc3 + - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 + - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 + - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca + - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 variables: KMP_WARNINGS: 0 diff --git a/environments/py-3.12-linux-64-dev.conda.lock.yml b/environments/py-3.12-linux-64-dev.conda.lock.yml index 91bb11d8..0640816e 100644 --- a/environments/py-3.12-linux-64-dev.conda.lock.yml +++ b/environments/py-3.12-linux-64-dev.conda.lock.yml @@ -34,7 +34,7 @@ dependencies: - cached_property=1.5.2=pyha770c72_1 - certifi=2025.1.31=pyhd8ed1ab_0 - cffi=1.17.1=py312h06ac9bb_0 - - charset-normalizer=3.4.1=pyhd8ed1ab_0 + - charset-normalizer=3.4.2=pyhd8ed1ab_0 - click=8.1.8=pyh707e725_0 - cloudpickle=3.1.1=pyhd8ed1ab_0 - colorama=0.4.6=pyhd8ed1ab_1 @@ -64,8 +64,8 @@ dependencies: - greenlet=3.2.1=py312h2ec8cdc_0 - h11=0.16.0=pyhd8ed1ab_0 - h2=4.2.0=pyhd8ed1ab_0 - - h5py=3.13.0=nompi_py312hedeef09_100 - - hdf5=1.14.3=nompi_h2d575fe_109 + - h5py=3.13.0=nompi_py312h01d377b_101 + - hdf5=1.14.6=nompi_h2d575fe_101 - hpack=4.1.0=pyhd8ed1ab_0 - httpcore=1.0.9=pyh29332c3_0 - httpx=0.28.1=pyhd8ed1ab_0 @@ -82,10 +82,10 @@ dependencies: - ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0 - ipywidgets=7.8.5=pyhd8ed1ab_0 - isoduration=20.11.0=pyhd8ed1ab_1 - - isort=6.0.1=pyhd8ed1ab_0 + - isort=6.0.1=pyhd8ed1ab_1 - jedi=0.19.2=pyhd8ed1ab_1 - jinja2=3.1.6=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_1 + - joblib=1.5.0=pyhd8ed1ab_0 - json5=0.12.0=pyhd8ed1ab_0 - jsonpointer=3.0.0=py312h7900ff3_1 - jsonschema=4.23.0=pyhd8ed1ab_1 @@ -182,7 +182,7 @@ dependencies: - numcodecs=0.15.1=py312hf9745cd_0 - numpy=1.26.4=py312heda63a1_0 - openjpeg=2.5.3=h5fbd93e_0 - - openssl=3.5.0=h7b32b05_0 + - openssl=3.5.0=h7b32b05_1 - overrides=7.7.0=pyhd8ed1ab_1 - packaging=25.0=pyh29332c3_1 - pandas=2.2.3=py312hf9745cd_3 @@ -193,7 +193,7 @@ dependencies: - pexpect=4.9.0=pyhd8ed1ab_1 - pickleshare=0.7.5=pyhd8ed1ab_1004 - pillow=10.3.0=py312h287a98d_1 - - pip=25.1=pyh8b19718_0 + - pip=25.1.1=pyh8b19718_0 - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_2 - platformdirs=4.3.7=pyh29332c3_0 - pluggy=1.5.0=pyhd8ed1ab_1 @@ -211,7 +211,7 @@ dependencies: - pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0 - pydiso=0.1.2=py312h772f2df_0 - pygments=2.19.1=pyhd8ed1ab_0 - - pylint=3.3.6=pyh29332c3_0 + - pylint=3.3.7=pyhe01879c_0 - pymatsolver=0.3.1=pyh48887ae_201 - pyparsing=3.2.3=pyhd8ed1ab_1 - pysocks=1.7.1=pyha55dd90_7 @@ -304,11 +304,11 @@ dependencies: - zstandard=0.23.0=py312h66e93f0_2 - zstd=1.5.7=hb8e6e7a_2 - pip: - - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6e21320c89581dccb1635d8460dfe296ec41b6da - - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 - - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 - - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca - - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 + - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@7b76c8132fa01d3007b883326a817a8d1e17cfc3 + - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 + - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 + - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca + - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 variables: KMP_WARNINGS: 0 diff --git a/environments/py-3.12-linux-64.conda.lock.yml b/environments/py-3.12-linux-64.conda.lock.yml index cc2ee0f0..6ae890ff 100644 --- a/environments/py-3.12-linux-64.conda.lock.yml +++ b/environments/py-3.12-linux-64.conda.lock.yml @@ -36,13 +36,13 @@ dependencies: - fsspec=2025.3.2=pyhd8ed1ab_0 - geoana=0.7.2=py312hc39e661_0 - h2=4.2.0=pyhd8ed1ab_0 - - h5py=3.13.0=nompi_py312hedeef09_100 - - hdf5=1.14.3=nompi_h2d575fe_109 + - h5py=3.13.0=nompi_py312h01d377b_101 + - hdf5=1.14.6=nompi_h2d575fe_101 - hpack=4.1.0=pyhd8ed1ab_0 - hyperframe=6.1.0=pyhd8ed1ab_0 - importlib-metadata=8.6.1=pyha770c72_0 - jinja2=3.1.6=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_1 + - joblib=1.5.0=pyhd8ed1ab_0 - keyutils=1.6.1=h166bdaf_0 - kiwisolver=1.4.8=py312h84d6215_0 - krb5=1.21.3=h659f571_0 @@ -102,12 +102,12 @@ dependencies: - numcodecs=0.15.1=py312hf9745cd_0 - numpy=1.26.4=py312heda63a1_0 - openjpeg=2.5.3=h5fbd93e_0 - - openssl=3.5.0=h7b32b05_0 + - openssl=3.5.0=h7b32b05_1 - packaging=25.0=pyh29332c3_1 - pandas=2.2.3=py312hf9745cd_3 - partd=1.4.2=pyhd8ed1ab_0 - pillow=10.3.0=py312h287a98d_1 - - pip=25.1=pyh8b19718_0 + - pip=25.1.1=pyh8b19718_0 - psutil=7.0.0=py312h66e93f0_0 - pthread-stubs=0.4=hb9d3cd8_1002 - pycparser=2.22=pyh29332c3_1 @@ -155,11 +155,11 @@ dependencies: - zstandard=0.23.0=py312h66e93f0_2 - zstd=1.5.7=hb8e6e7a_2 - pip: - - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6e21320c89581dccb1635d8460dfe296ec41b6da - - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 - - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 - - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca - - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 + - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@7b76c8132fa01d3007b883326a817a8d1e17cfc3 + - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 + - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 + - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca + - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 variables: KMP_WARNINGS: 0 diff --git a/environments/py-3.12-win-64-dev.conda.lock.yml b/environments/py-3.12-win-64-dev.conda.lock.yml index 832d7a19..769396d5 100644 --- a/environments/py-3.12-win-64-dev.conda.lock.yml +++ b/environments/py-3.12-win-64-dev.conda.lock.yml @@ -33,7 +33,7 @@ dependencies: - cached_property=1.5.2=pyha770c72_1 - certifi=2025.1.31=pyhd8ed1ab_0 - cffi=1.17.1=py312h4389bb4_0 - - charset-normalizer=3.4.1=pyhd8ed1ab_0 + - charset-normalizer=3.4.2=pyhd8ed1ab_0 - click=8.1.8=pyh7428d3b_0 - cloudpickle=3.1.1=pyhd8ed1ab_0 - colorama=0.4.6=pyhd8ed1ab_1 @@ -64,8 +64,8 @@ dependencies: - greenlet=3.2.1=py312h275cf98_0 - h11=0.16.0=pyhd8ed1ab_0 - h2=4.2.0=pyhd8ed1ab_0 - - h5py=3.13.0=nompi_py312ha036244_100 - - hdf5=1.14.3=nompi_hb2c4d47_109 + - h5py=3.13.0=nompi_py312h4e244af_101 + - hdf5=1.14.6=nompi_hd5d9e70_101 - hpack=4.1.0=pyhd8ed1ab_0 - httpcore=1.0.9=pyh29332c3_0 - httpx=0.28.1=pyhd8ed1ab_0 @@ -83,10 +83,10 @@ dependencies: - ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0 - ipywidgets=7.8.5=pyhd8ed1ab_0 - isoduration=20.11.0=pyhd8ed1ab_1 - - isort=6.0.1=pyhd8ed1ab_0 + - isort=6.0.1=pyhd8ed1ab_1 - jedi=0.19.2=pyhd8ed1ab_1 - jinja2=3.1.6=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_1 + - joblib=1.5.0=pyhd8ed1ab_0 - json5=0.12.0=pyhd8ed1ab_0 - jsonpointer=3.0.0=py312h2e8e312_1 - jsonschema=4.23.0=pyhd8ed1ab_1 @@ -168,7 +168,7 @@ dependencies: - numcodecs=0.15.1=py312h72972c8_0 - numpy=1.26.4=py312h8753938_0 - openjpeg=2.5.3=h4d64b90_0 - - openssl=3.5.0=ha4e3fda_0 + - openssl=3.5.0=ha4e3fda_1 - overrides=7.7.0=pyhd8ed1ab_1 - packaging=25.0=pyh29332c3_1 - pandas=2.2.3=py312h72972c8_3 @@ -178,7 +178,7 @@ dependencies: - partd=1.4.2=pyhd8ed1ab_0 - pickleshare=0.7.5=pyhd8ed1ab_1004 - pillow=10.3.0=py312h381445a_1 - - pip=25.1=pyh8b19718_0 + - pip=25.1.1=pyh8b19718_0 - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_2 - platformdirs=4.3.7=pyh29332c3_0 - pluggy=1.5.0=pyhd8ed1ab_1 @@ -195,7 +195,7 @@ dependencies: - pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0 - pydiso=0.1.2=py312h01acb21_0 - pygments=2.19.1=pyhd8ed1ab_0 - - pylint=3.3.6=pyh29332c3_0 + - pylint=3.3.7=pyhe01879c_0 - pymatsolver=0.3.1=pyh48887ae_201 - pyparsing=3.2.3=pyhd8ed1ab_1 - pysocks=1.7.1=pyh09c184e_7 @@ -295,11 +295,11 @@ dependencies: - zstandard=0.23.0=py312h4389bb4_2 - zstd=1.5.7=hbeecb71_2 - pip: - - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6e21320c89581dccb1635d8460dfe296ec41b6da - - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 - - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 - - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca - - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 + - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@7b76c8132fa01d3007b883326a817a8d1e17cfc3 + - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 + - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 + - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca + - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 variables: KMP_WARNINGS: 0 diff --git a/environments/py-3.12-win-64.conda.lock.yml b/environments/py-3.12-win-64.conda.lock.yml index bfd80705..52d50ada 100644 --- a/environments/py-3.12-win-64.conda.lock.yml +++ b/environments/py-3.12-win-64.conda.lock.yml @@ -35,14 +35,14 @@ dependencies: - fsspec=2025.3.2=pyhd8ed1ab_0 - geoana=0.7.2=py312hbaa7e33_0 - h2=4.2.0=pyhd8ed1ab_0 - - h5py=3.13.0=nompi_py312ha036244_100 - - hdf5=1.14.3=nompi_hb2c4d47_109 + - h5py=3.13.0=nompi_py312h4e244af_101 + - hdf5=1.14.6=nompi_hd5d9e70_101 - hpack=4.1.0=pyhd8ed1ab_0 - hyperframe=6.1.0=pyhd8ed1ab_0 - importlib-metadata=8.6.1=pyha770c72_0 - intel-openmp=2024.2.1=h57928b3_1083 - jinja2=3.1.6=pyhd8ed1ab_0 - - joblib=1.4.2=pyhd8ed1ab_1 + - joblib=1.5.0=pyhd8ed1ab_0 - kiwisolver=1.4.8=py312hc790b64_0 - krb5=1.21.3=hdf4eb48_0 - lcms2=2.17=hbcf6048_0 @@ -87,12 +87,12 @@ dependencies: - numcodecs=0.15.1=py312h72972c8_0 - numpy=1.26.4=py312h8753938_0 - openjpeg=2.5.3=h4d64b90_0 - - openssl=3.5.0=ha4e3fda_0 + - openssl=3.5.0=ha4e3fda_1 - packaging=25.0=pyh29332c3_1 - pandas=2.2.3=py312h72972c8_3 - partd=1.4.2=pyhd8ed1ab_0 - pillow=10.3.0=py312h381445a_1 - - pip=25.1=pyh8b19718_0 + - pip=25.1.1=pyh8b19718_0 - psutil=7.0.0=py312h4389bb4_0 - pthread-stubs=0.4=h0e40799_1002 - pycparser=2.22=pyh29332c3_1 @@ -144,11 +144,11 @@ dependencies: - zstandard=0.23.0=py312h4389bb4_2 - zstd=1.5.7=hbeecb71_2 - pip: - - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6e21320c89581dccb1635d8460dfe296ec41b6da - - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 - - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 - - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca - - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 + - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@7b76c8132fa01d3007b883326a817a8d1e17cfc3 + - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 + - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@24027d81b65df99d5f582acc4497ed33df8a3396 + - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@e9c99d6fd5d324571a2717990aecb3ed673cbaca + - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@d5959a0e19b45a89eb8a02cd608bc8accb74adb7 variables: KMP_WARNINGS: 0 diff --git a/py-3.10.conda-lock.yml b/py-3.10.conda-lock.yml index b9130596..071ec7bd 100644 --- a/py-3.10.conda-lock.yml +++ b/py-3.10.conda-lock.yml @@ -35,7 +35,7 @@ package: platform: linux-64 dependencies: llvm-openmp: '>=9.0.1' - 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url: git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 + url: git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 hash: - sha256: a004f090c7ad51fd1503e5af0126c47f71b9ef98 + sha256: 4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 source: type: url - url: git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 + url: git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 category: main optional: false - name: geoh5py @@ -8589,12 +8587,12 @@ package: numpy: '>=1.26.0,<1.27.0' pillow: '>=10.3.0,<10.4.0' pydantic: '>=2.5.2,<3.0.0' - url: git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 + url: git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 hash: - sha256: a004f090c7ad51fd1503e5af0126c47f71b9ef98 + sha256: 4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 source: type: url - url: git+https://github.com/MiraGeoscience/geoh5py.git@a004f090c7ad51fd1503e5af0126c47f71b9ef98 + url: git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1 category: main optional: false - name: mira-simpeg