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bji@/opt/local/Model-SEED-core$ ./bin/ms-config reload ./config/mySetting.conf
rm -f Source/.o Linux/mfatoolkit
make: ** No rule to make target Source/driver.o', needed byMFATOOLKIT'. Stop.
MFAToolkit compilation failed!
Model SEED Configuration Successful!
bji@dhcp-239-072/opt/local/Model-SEED-core$
It showed that the MFATOOLKIT compilation error. So how to solve it.
If it not solved, when we reconstruct the model using mdl-reconstruct, it will generate errors as following:
Creating problem directory: 1
Creating list of inactive reactions: /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/InactiveModelReactions.txt
Printing gapfilling parameters in : /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/CompleteGapfillingParameters.txt
Running runFBAStudy
Using problem directory: 1
Creating the model file: /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/Seed416276.5.1.tbl
Creating biochemistry provenance files
Running FBA
Whoops! We encountered an unrecoverable error.
When I configure the configure file,
bji@/opt/local/Model-SEED-core$ ./bin/ms-config reload ./config/mySetting.conf
rm -f Source/.o Linux/mfatoolkit
make: ** No rule to make target
Source/driver.o', needed byMFATOOLKIT'. Stop.MFAToolkit compilation failed!
Model SEED Configuration Successful!
bji@dhcp-239-072/opt/local/Model-SEED-core$
It showed that the MFATOOLKIT compilation error. So how to solve it.
If it not solved, when we reconstruct the model using mdl-reconstruct, it will generate errors as following:
Creating problem directory: 1
Creating list of inactive reactions: /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/InactiveModelReactions.txt
Printing gapfilling parameters in : /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/CompleteGapfillingParameters.txt
Running runFBAStudy
Using problem directory: 1
Creating the model file: /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/Seed416276.5.1.tbl
Creating biochemistry provenance files
Running FBA
Whoops! We encountered an unrecoverable error.
Could not find MFAToolkit executable
View error using the "ms-lasterror" command.
So how to fix it?
Thank you for help!