I just installed dRep via bioconda in a fresh conda environment, and it appeared to pull the latest version of pandas (v3.0.2) which caused dRep to crash during secondary comparisons. Apparently an issue with delim_whitespace=True not being recognized in read_csv, which is a deprecated argument as of pandas>3.0
https://pandas.pydata.org/docs/reference/api/pandas.read_csv.html
Down-grading to pandas 2.3 fixed it!
I just installed dRep via bioconda in a fresh conda environment, and it appeared to pull the latest version of pandas (v3.0.2) which caused dRep to crash during secondary comparisons. Apparently an issue with
delim_whitespace=Truenot being recognized inread_csv, which is a deprecated argument as of pandas>3.0https://pandas.pydata.org/docs/reference/api/pandas.read_csv.html
Down-grading to pandas 2.3 fixed it!