Hi,
I'm getting an error when running dereplicate and when I check the checkM log file this is the line with the error:
ERROR: Models must be parsed before identifying HMM hits.
dRep dereplicate drep_out/ -g /home/nina/seqs/*.fasta -d --set_recursion 10000
[checkm.log](https://github.com/user-attachments/files/28482518/checkm.log)
***************************************************
..:: dRep dereplicate Step 1. Filter ::..
***************************************************
Will filter the genome list
371 genomes were input to dRep
Calculating genome info of genomes
100.00% of genomes passed length filtering
Running prodigal
Past prodigal runs found- will not re-run
Running checkM
Setting Maximum Recursion depth to 10000
!!! checkM failed !!!
See https://drep.readthedocs.io/en/latest/advanced_use.html#troubleshooting-checkm for help troubleshooting
```
How can I resolve this?
Thank you.
Hi,
I'm getting an error when running dereplicate and when I check the checkM log file this is the line with the error:
ERROR: Models must be parsed before identifying HMM hits.