2.Different naming conventions for single profiling and batch profiling

[arya-arga9502]

Performing single profiling using the following command

zipstrain utilities profile-single
--bed-file genomes_bed_file.bed
--bam-file sample.bam
--stb-file mapping.stb
--null-model null_model.parquet
--num-chunks 24
--max-concurrency 4
--output-dir sample_profile

results in the profile parquet file named as such: sample_profile.parquet, whereas performing batch profiling using the following command

zipstrain profile
--input-table bams.csv
--stb-file reference_genomes.stb
--null-model null_model.parquet
--gene-range-table profiling_assets/gene_range_table.tsv
--bed-file profiling_assets/genomes_bed_file.bed
--genome-length-file profiling_assets/genome_lengths.parquet
--run-dir out_profile

results in the profile parquet file named as such: sample.bam.parquet.

[ParsaGhadermazi]

Hi @arya-arga9502, thanks for mentioning this issue. This is now fixed in v 0.9.21. Let me know if this still exists