3.Error while appending new comparisons to existing comparison table using classic method

[arya-arga9502]

The comparison table produced by the following command

zipstrain utilities chunk-genome-compare
-p probiotic_output.parquet
-o comparison_table.parquet

removes the ".parquet" in the sample_1 and sample_2 columns. Since this name is used to track which profiles have already been compared and only perform comparisons on the remaining profiles using the code below, one would have to manually remove the .parquet from the profile_name in profiles.csv for the program to realize that comparisons for said profiles have already been done. Otherwise, it sees these profiles as different and re-runs the comparisons on all profiles.

zipstrain utilities build-profile-db
--profile-db-csv profiles.csv
--output-file profile_db.parquet

zipstrain utilities build-genome-comparison-config
--profile-db profile_db.parquet
--gene-db-id ref_genes_v1
--reference-genome-id ref_genomes_v1
--scope all
--min-cov 5
--current-comp-table existing_comparison.parquet
--min-gene-compare-len 200
--stb-file-loc reference_genomes.stb
--output-file genome_compare_config.json

[ParsaGhadermazi]

Hi @arya-arga9502 Thanks again for opening the issues. These are fixed now. However, the interface has changed and the documentation website has the most recent instructions on how to things the new way.