While adding comparisons for new profiles using the command
zipstrain utilities append-matrix-db
--profile-dir outputs/new_profile_run
--matrix-db-file outputs/matrix_db.h5
--memory-limit-gb 16
throws the following error
ValueError: Profile GCF_000825065.1_BIC1401212621a.V1_genomic_profile.parquet does not match the existing matrix store contract: unknown genomes GCA_022649135.1_ASM2264913v1_genomic.fna | unknown scaffolds GCA_024104275.1_ASM2410427v1_genomic.fna:GCA_024104275_1_ASM2410427v1_genomic_fna_JAGGHK010000001.1, GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000007.1, GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000044.1, GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000045.1, GCA_937876495.1_SRR2753156_bin.73_CONCOCT_v1.1_MAG_genomic.fna:GCA_937876495_1_SRR2753156_bin_73_CONCOCT_v1_1_MAG_genomic_fna_CALEGL010000086.1, GCF_000741285.1_Bifmon_genomic.fna:GCF_000741285_1_Bifmon_genomic_fna_NZ_JGZE01000018.1, GCF_000741765.1_Biftsu_genomic.fna:GCF_000741765_1_Biftsu_genomic_fna_NZ_JGZU01000015.1, GCF_000741775.1_Bifsub_genomic.fna:GCF_000741775_1_Bifsub_genomic_fna_NZ_JGZR01000012.1, GCF_000741785.1_Bifste_genomic.fna:GCF_000741785_1_Bifste_genomic_fna_NZ_JGZP01000024.1, GCF_000770925.1_DSM-6489_genomic.fna:GCF_000770925_1_DSM-6489_genomic_fna_NZ_JDTK01000019.1, GCF_000770925.1_DSM-6489_genomic.fna:GCF_000770925_1_DSM-6489_genomic_fna_NZ_JDTK01000028.1, GCF_000771225.1_DSM-20099_genomic.fna:GCF_000771225_1_DSM-20099_genomic_fna_NZ_JDTZ01000003.1, GCF_001417815.1_ASM141781v1_genomic.fna:GCF_001417815_1_ASM141781v1_genomic_fna_NZ_BCFK01000006.1, GCF_001417815.1_ASM141781v1_genomic.fna:GCF_001417815_1_ASM141781v1_genomic_fna_NZ_BCFK01000049.1, GCF_002259755.1_ASM225975v1_genomic.fna:GCF_002259755_1_ASM225975v1_genomic_fna_NZ_MWWY01000002.1, GCF_002259755.1_ASM225975v1_genomic.fna:GCF_002259755_1_ASM225975v1_genomic_fna_NZ_MWWY01000016.1, GCF_002451435.1_ASM245143v1_genomic.fna:GCF_002451435_1_ASM245143v1_genomic_fna_NZ_DKCF01000035.1, GCF_002742445.1_ASM274244v1_genomic.fna:GCF_002742445_1_ASM274244v1_genomic_fna_NZ_NJNQ01000009.1, GCF_002860365.1_ASM286036v1_genomic.fna:GCF_002860365_1_ASM286036v1_genomic_fna_NZ_NMWT01000019.1, GCF_003129905.1_ASM312990v1_genomic.fna:GCF_003129905_1_ASM312990v1_genomic_fna_NZ_QFFM01000015.1, GCF_003129905.1_ASM312990v1_genomic.fna:GCF_003129905_1_ASM312990v1_genomic_fna_NZ_QFFM01000040.1, GCF_009078285.1_ASM907828v1_genomic.fna:GCF_009078285_1_ASM907828v1_genomic_fna_NZ_RQSP01000011.1, GCF_009078285.1_ASM907828v1_genomic.fna:GCF_009078285_1_ASM907828v1_genomic_fna_NZ_RQSP01000028.1, GCF_009193355.1_ASM919335v1_genomic.fna:GCF_009193355_1_ASM919335v1_genomic_fna_NZ_WBVT01000009.1, GCF_009193355.1_ASM919335v1_genomic.fna:GCF_009193355_1_ASM919335v1_genomic_fna_NZ_WBVT01000072.1, GCF_009683175.1_ASM968317v1_genomic.fna:GCF_009683175_1_ASM968317v1_genomic_fna_NZ_WKKW01000007.1, GCF_010667645.1_ASM1066764v1_genomic.fna:GCF_010667645_1_ASM1066764v1_genomic_fna_NZ_WHZV01000013.1, GCF_010667685.1_ASM1066768v1_genomic.fna:GCF_010667685_1_ASM1066768v1_genomic_fna_NZ_WHZW01000022.1, GCF_012932365.1_ASM1293236v1_genomic.fna:GCF_012932365_1_ASM1293236v1_genomic_fna_NZ_JAAIIH010000011.1, GCF_012932375.1_ASM1293237v1_genomic.fna:GCF_012932375_1_ASM1293237v1_genomic_fna_NZ_JAAIIG010000016.1, GCF_019331675.1_ASM1933167v1_genomic.fna:GCF_019331675_1_ASM1933167v1_genomic_fna_NZ_JAHBBJ010000035.1, GCF_019331805.1_ASM1933180v1_genomic.fna:GCF_019331805_1_ASM1933180v1_genomic_fna_NZ_JAHBBE010000020.1, GCF_019331805.1_ASM1933180v1_genomic.fna:GCF_019331805_1_ASM1933180v1_genomic_fna_NZ_JAHBBE010000038.1 | out-of-range positions GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000007.1 profile_pos_range=1-24430 matrix_pos_range=2-24430; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000010.1 profile_pos_range=6184-22594 matrix_pos_range=40-22592; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000071.1 profile_pos_range=1-8541 matrix_pos_range=26-9046; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000087.1 profile_pos_range=2-7201 matrix_pos_range=4-7878; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000119.1 profile_pos_range=7-2825 matrix_pos_range=504-6211; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000171.1 profile_pos_range=1908-4205 matrix_pos_range=1-4203; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000184.1 profile_pos_range=1-3787 matrix_pos_range=2-3790; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000194.1 profile_pos_range=2-3466 matrix_pos_range=4-3471; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000195.1 profile_pos_range=1-1775 matrix_pos_range=70-3402; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000199.1 profile_pos_range=1-3314 matrix_pos_range=2-3315; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000203.1 profile_pos_range=1-3214 matrix_pos_range=1-3189; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000207.1 profile_pos_range=1-3035 matrix_pos_range=1-3034; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000212.1 profile_pos_range=1-2969 matrix_pos_range=1-2888; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000262.1 profile_pos_range=1-1700 matrix_pos_range=1-1697; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000269.1 profile_pos_range=1077-1576 matrix_pos_range=1-1575; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000291.1 profile_pos_range=1-1065 matrix_pos_range=3-1131; GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000001.1 profile_pos_range=50243-243651 matrix_pos_range=239-243618; GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000019.1 profile_pos_range=7204-39226 matrix_pos_range=18-38971; GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000022.1 profile_pos_range=39-30458 matrix_pos_range=42-31163; GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000024.1 profile_pos_range=811-27977 matrix_pos_range=199-27949; GCF_000770925.1_DSM-6489_genomic.fna:GCF_000770925_1_DSM-6489_genomic_fna_NZ_JDTK01000054.1 profile_pos_range=1083-1232 matrix_pos_range=2-1221; GCF_002259745.1_ASM225974v1_genomic.fna:GCF_002259745_1_ASM225974v1_genomic_fna_NZ_MWWW01000053.1 profile_pos_range=1042-1249 matrix_pos_range=1008-1244; GCF_002259755.1_ASM225975v1_genomic.fna:GCF_002259755_1_ASM225975v1_genomic_fna_NZ_MWWY01000037.1 profile_pos_range=133-623 matrix_pos_range=136-41304; GCF_002259755.1_ASM225975v1_genomic.fna:GCF_002259755_1_ASM225975v1_genomic_fna_NZ_MWWY01000073.1 profile_pos_range=926-1097 matrix_pos_range=137-1096; GCF_010667645.1_ASM1066764v1_genomic.fna:GCF_010667645_1_ASM1066764v1_genomic_fna_NZ_WHZV01000016.1 profile_pos_range=645-4230 matrix_pos_range=647-4755; GCF_012932365.1_ASM1293236v1_genomic.fna:GCF_012932365_1_ASM1293236v1_genomic_fna_NZ_JAAIIH010000034.1 profile_pos_range=3-1553 matrix_pos_range=85-1533; GCF_019331735.1_ASM1933173v1_genomic.fna:GCF_019331735_1_ASM1933173v1_genomic_fna_NZ_JAHBBH010000057.1 profile_pos_range=1-11281 matrix_pos_range=1-11248; GCF_019331735.1_ASM1933173v1_genomic.fna:GCF_019331735_1_ASM1933173v1_genomic_fna_NZ_JAHBBH010000070.1 profile_pos_range=732-4909 matrix_pos_range=732-4279; GCF_959020155.1_ERR10149223_bin.28_MetaWRAP_v1.3_MAG_genomic.fna:GCF_959020155_1_ERR10149223_bin_28_MetaWRAP_v1_3_MAG_genomic_fna_NZ_CAUERC010000024.1 profile_pos_range=131-18831 matrix_pos_range=145-23529; GCF_959020155.1_ERR10149223_bin.28_MetaWRAP_v1.3_MAG_genomic.fna:GCF_959020155_1_ERR10149223_bin_28_MetaWRAP_v1_3_MAG_genomic_fna_NZ_CAUERC010000037.1 profile_pos_range=5416-12199 matrix_pos_range=128-12193; GCF_959020155.1_ERR10149223_bin.28_MetaWRAP_v1.3_MAG_genomic.fna:GCF_959020155_1_ERR10149223_bin_28_MetaWRAP_v1_3_MAG_genomic_fna_NZ_CAUERC010000054.1 profile_pos_range=2-2911 matrix_pos_range=3-3867
This was while trying to perform comparisons for multiple genomes. Even while adding comparisons for a single genome, the following error is encountered:
ValueError: Profile GCF_000825065.1_BIC1401212621a.V1_genomic_profile.parquet does not match the existing matrix store contract: unknown genomes GCA_000741495.1_Bifthelum_genomic.fna, GCA_003585845.1_ASM358584v1_genomic.fna, GCA_022640915.1_ASM2264091v1_genomic.fna, GCA_022649135.1_ASM2264913v1_genomic.fna, GCA_022739095.1_ASM2273909v1_genomic.fna, GCA_024104275.1_ASM2410427v1_genomic.fna, GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna, GCA_905207115.1_ERR260192-mag-bin.2_genomic.fna, GCA_937876495.1_SRR2753156_bin.73_CONCOCT_v1.1_MAG_genomic.fna, GCF_000010425.1_ASM1042v1_genomic.fna, GCF_000196555.1_ASM19655v1_genomic.fna, GCF_000260715.1_ASM26071v1_genomic.fna, GCF_000263635.1_ASM26363v1_genomic.fna, GCF_000499285.1_bifidobacterium_strain7101_genomic.fna, GCF_000522505.1_DSM27321_genomic.fna, GCF_000706765.1_ASM70676v1_genomic.fna, GCF_000737845.1_BBOMBassembly_genomic.fna, GCF_000741135.1_Bifcho_genomic.fna, GCF_000741165.1_Bifbia_genomic.fna, GCF_000741175.1_Bifcal_genomic.fna, GCF_000741215.1_Bifgalrum_genomic.fna, GCF_000741255.1_Bifmag_genomic.fna, GCF_000741285.1_Bifmon_genomic.fna, GCF_000741295.1_Bifpse_sub.glo_genomic.fna, GCF_000741455.1_Bifthe_sub.the_genomic.fna, GCF_000741525.1_Bifboh_genomic.fna, GCF_000741535.1_Bifbou_genomic.fna, GCF_000741575.1_Bifcun_genomic.fna, GCF_000741695.1_Bifreu_genomic.fna, GCF_000741715.1_Bifsag_genomic.fna, GCF_000741765.1_Biftsu_genomic.fna, GCF_000741775.1_Bifsub_genomic.fna, GCF_000741785.1_Bifste_genomic.fna, GCF_000770925.1_DSM-6489_genomic.fna, GCF_000771225.1_DSM-20099_genomic.fna, GCF_000771405.1_DSM-20433_genomic.fna, GCF_000800455.1_ASM80045v1_genomic.fna, GCF_000967265.1_ASM96726v1_genomic.fna, GCF_001025135.1_ASM102513v1_genomic.fna, GCF_001025155.1_ASM102515v1_genomic.fna, GCF_001025175.1_ASM102517v1_genomic.fna, GCF_001025195.1_ASM102519v1_genomic.fna, GCF_001025215.1_ASM102521v1_genomic.fna, GCF_001042595.1_ASM104259v1_genomic.fna, GCF_001042615.1_ASM104261v1_genomic.fna, GCF_001042635.1_ASM104263v1_genomic.fna, GCF_001417815.1_ASM141781v1_genomic.fna, GCF_001546455.1_ASM154645v1_genomic.fna, GCF_001563665.1_ASM156366v1_genomic.fna, GCF_002259745.1_ASM225974v1_genomic.fna, GCF_002259755.1_ASM225975v1_genomic.fna, GCF_002286935.1_ASM228693v1_genomic.fna, GCF_002298605.1_ASM229860v1_genomic.fna, GCF_002451435.1_ASM245143v1_genomic.fna, GCF_002715865.1_ASM271586v1_genomic.fna, GCF_002742445.1_ASM274244v1_genomic.fna, GCF_002802865.1_ASM280286v1_genomic.fna, GCF_002802915.1_ASM280291v1_genomic.fna, GCF_002860365.1_ASM286036v1_genomic.fna, GCF_002860405.1_ASM286040v1_genomic.fna, GCF_003129905.1_ASM312990v1_genomic.fna, GCF_003202695.1_ASM320269v1_genomic.fna, GCF_003202755.1_ASM320275v1_genomic.fna, GCF_003315635.1_ASM331563v1_genomic.fna, GCF_003397585.1_ASM339758v1_genomic.fna, GCF_003951095.1_ASM395109v1_genomic.fna, GCF_003952025.1_ASM395202v1_genomic.fna, GCF_003952945.1_ASM395294v1_genomic.fna, GCF_004155535.1_ASM415553v1_genomic.fna, GCF_008698145.1_ASM869814v1_genomic.fna, GCF_008698235.1_ASM869823v1_genomic.fna, GCF_009078285.1_ASM907828v1_genomic.fna, GCF_009193305.1_ASM919330v1_genomic.fna, GCF_009193355.1_ASM919335v1_genomic.fna, GCF_009299475.1_ASM929947v1_genomic.fna, GCF_009299485.1_ASM929948v1_genomic.fna, GCF_009299505.1_ASM929950v1_genomic.fna, GCF_009371885.1_ASM937188v1_genomic.fna, GCF_009683175.1_ASM968317v1_genomic.fna, GCF_009727065.1_ASM972706v1_genomic.fna, GCF_010667645.1_ASM1066764v1_genomic.fna, GCF_010667685.1_ASM1066768v1_genomic.fna, GCF_012932365.1_ASM1293236v1_genomic.fna, GCF_012932375.1_ASM1293237v1_genomic.fna, GCF_012932425.1_ASM1293242v1_genomic.fna, GCF_012932445.1_ASM1293244v1_genomic.fna, GCF_012932675.1_ASM1293267v1_genomic.fna, GCF_014898155.1_ASM1489815v1_genomic.fna, GCF_014898175.1_ASM1489817v1_genomic.fna, GCF_016101585.1_ASM1610158v1_genomic.fna, GCF_016899725.1_ASM1689972v1_genomic.fna, GCF_018555385.1_ASM1855538v1_genomic.fna, GCF_018555435.2_ASM1855543v2_genomic.fna, GCF_018555455.1_ASM1855545v1_genomic.fna, GCF_019331675.1_ASM1933167v1_genomic.fna, GCF_019331715.1_ASM1933171v1_genomic.fna, GCF_019331725.1_ASM1933172v1_genomic.fna, GCF_019331735.1_ASM1933173v1_genomic.fna, GCF_019331775.1_ASM1933177v1_genomic.fna, GCF_019331805.1_ASM1933180v1_genomic.fna, GCF_019469425.1_ASM1946942v1_genomic.fna, GCF_020884755.1_ASM2088475v1_genomic.fna, GCF_022655035.1_ASM2265503v1_genomic.fna, GCF_026537325.1_ASM2653732v1_genomic.fna, GCF_029392075.1_ASM2939207v1_genomic.fna, GCF_029392315.1_ASM2939231v1_genomic.fna, GCF_029395435.1_ASM2939543v1_genomic.fna, GCF_029395535.1_ASM2939553v1_genomic.fna, GCF_029433295.1_ASM2943329v1_genomic.fna, GCF_029433335.1_ASM2943333v1_genomic.fna, GCF_029433395.1_ASM2943339v1_genomic.fna, GCF_030758775.1_ASM3075877v1_genomic.fna, GCF_900129045.1_IMG-taxon_2563366502_annotated_assembly_genomic.fna, GCF_959020145.1_ERR10149223_bin.5_MetaWRAP_v1.3_MAG_genomic.fna, GCF_959020155.1_ERR10149223_bin.28_MetaWRAP_v1.3_MAG_genomic.fna, GCF_959028125.1_ERR10149229_bin.50_MetaWRAP_v1.3_MAG_genomic.fna
While adding comparisons for new profiles using the command
zipstrain utilities append-matrix-db
--profile-dir outputs/new_profile_run
--matrix-db-file outputs/matrix_db.h5
--memory-limit-gb 16
throws the following error
ValueError: Profile GCF_000825065.1_BIC1401212621a.V1_genomic_profile.parquet does not match the existing matrix store contract: unknown genomes GCA_022649135.1_ASM2264913v1_genomic.fna | unknown scaffolds GCA_024104275.1_ASM2410427v1_genomic.fna:GCA_024104275_1_ASM2410427v1_genomic_fna_JAGGHK010000001.1, GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000007.1, GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000044.1, GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000045.1, GCA_937876495.1_SRR2753156_bin.73_CONCOCT_v1.1_MAG_genomic.fna:GCA_937876495_1_SRR2753156_bin_73_CONCOCT_v1_1_MAG_genomic_fna_CALEGL010000086.1, GCF_000741285.1_Bifmon_genomic.fna:GCF_000741285_1_Bifmon_genomic_fna_NZ_JGZE01000018.1, GCF_000741765.1_Biftsu_genomic.fna:GCF_000741765_1_Biftsu_genomic_fna_NZ_JGZU01000015.1, GCF_000741775.1_Bifsub_genomic.fna:GCF_000741775_1_Bifsub_genomic_fna_NZ_JGZR01000012.1, GCF_000741785.1_Bifste_genomic.fna:GCF_000741785_1_Bifste_genomic_fna_NZ_JGZP01000024.1, GCF_000770925.1_DSM-6489_genomic.fna:GCF_000770925_1_DSM-6489_genomic_fna_NZ_JDTK01000019.1, GCF_000770925.1_DSM-6489_genomic.fna:GCF_000770925_1_DSM-6489_genomic_fna_NZ_JDTK01000028.1, GCF_000771225.1_DSM-20099_genomic.fna:GCF_000771225_1_DSM-20099_genomic_fna_NZ_JDTZ01000003.1, GCF_001417815.1_ASM141781v1_genomic.fna:GCF_001417815_1_ASM141781v1_genomic_fna_NZ_BCFK01000006.1, GCF_001417815.1_ASM141781v1_genomic.fna:GCF_001417815_1_ASM141781v1_genomic_fna_NZ_BCFK01000049.1, GCF_002259755.1_ASM225975v1_genomic.fna:GCF_002259755_1_ASM225975v1_genomic_fna_NZ_MWWY01000002.1, GCF_002259755.1_ASM225975v1_genomic.fna:GCF_002259755_1_ASM225975v1_genomic_fna_NZ_MWWY01000016.1, GCF_002451435.1_ASM245143v1_genomic.fna:GCF_002451435_1_ASM245143v1_genomic_fna_NZ_DKCF01000035.1, GCF_002742445.1_ASM274244v1_genomic.fna:GCF_002742445_1_ASM274244v1_genomic_fna_NZ_NJNQ01000009.1, GCF_002860365.1_ASM286036v1_genomic.fna:GCF_002860365_1_ASM286036v1_genomic_fna_NZ_NMWT01000019.1, GCF_003129905.1_ASM312990v1_genomic.fna:GCF_003129905_1_ASM312990v1_genomic_fna_NZ_QFFM01000015.1, GCF_003129905.1_ASM312990v1_genomic.fna:GCF_003129905_1_ASM312990v1_genomic_fna_NZ_QFFM01000040.1, GCF_009078285.1_ASM907828v1_genomic.fna:GCF_009078285_1_ASM907828v1_genomic_fna_NZ_RQSP01000011.1, GCF_009078285.1_ASM907828v1_genomic.fna:GCF_009078285_1_ASM907828v1_genomic_fna_NZ_RQSP01000028.1, GCF_009193355.1_ASM919335v1_genomic.fna:GCF_009193355_1_ASM919335v1_genomic_fna_NZ_WBVT01000009.1, GCF_009193355.1_ASM919335v1_genomic.fna:GCF_009193355_1_ASM919335v1_genomic_fna_NZ_WBVT01000072.1, GCF_009683175.1_ASM968317v1_genomic.fna:GCF_009683175_1_ASM968317v1_genomic_fna_NZ_WKKW01000007.1, GCF_010667645.1_ASM1066764v1_genomic.fna:GCF_010667645_1_ASM1066764v1_genomic_fna_NZ_WHZV01000013.1, GCF_010667685.1_ASM1066768v1_genomic.fna:GCF_010667685_1_ASM1066768v1_genomic_fna_NZ_WHZW01000022.1, GCF_012932365.1_ASM1293236v1_genomic.fna:GCF_012932365_1_ASM1293236v1_genomic_fna_NZ_JAAIIH010000011.1, GCF_012932375.1_ASM1293237v1_genomic.fna:GCF_012932375_1_ASM1293237v1_genomic_fna_NZ_JAAIIG010000016.1, GCF_019331675.1_ASM1933167v1_genomic.fna:GCF_019331675_1_ASM1933167v1_genomic_fna_NZ_JAHBBJ010000035.1, GCF_019331805.1_ASM1933180v1_genomic.fna:GCF_019331805_1_ASM1933180v1_genomic_fna_NZ_JAHBBE010000020.1, GCF_019331805.1_ASM1933180v1_genomic.fna:GCF_019331805_1_ASM1933180v1_genomic_fna_NZ_JAHBBE010000038.1 | out-of-range positions GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000007.1 profile_pos_range=1-24430 matrix_pos_range=2-24430; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000010.1 profile_pos_range=6184-22594 matrix_pos_range=40-22592; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000071.1 profile_pos_range=1-8541 matrix_pos_range=26-9046; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000087.1 profile_pos_range=2-7201 matrix_pos_range=4-7878; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000119.1 profile_pos_range=7-2825 matrix_pos_range=504-6211; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000171.1 profile_pos_range=1908-4205 matrix_pos_range=1-4203; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000184.1 profile_pos_range=1-3787 matrix_pos_range=2-3790; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000194.1 profile_pos_range=2-3466 matrix_pos_range=4-3471; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000195.1 profile_pos_range=1-1775 matrix_pos_range=70-3402; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000199.1 profile_pos_range=1-3314 matrix_pos_range=2-3315; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000203.1 profile_pos_range=1-3214 matrix_pos_range=1-3189; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000207.1 profile_pos_range=1-3035 matrix_pos_range=1-3034; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000212.1 profile_pos_range=1-2969 matrix_pos_range=1-2888; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000262.1 profile_pos_range=1-1700 matrix_pos_range=1-1697; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000269.1 profile_pos_range=1077-1576 matrix_pos_range=1-1575; GCA_022739095.1_ASM2273909v1_genomic.fna:GCA_022739095_1_ASM2273909v1_genomic_fna_JAIJEI010000291.1 profile_pos_range=1-1065 matrix_pos_range=3-1131; GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000001.1 profile_pos_range=50243-243651 matrix_pos_range=239-243618; GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000019.1 profile_pos_range=7204-39226 matrix_pos_range=18-38971; GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000022.1 profile_pos_range=39-30458 matrix_pos_range=42-31163; GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna:GCA_905202265_1_ERR1430398-mag-bin_4_genomic_fna_CAJKRE010000024.1 profile_pos_range=811-27977 matrix_pos_range=199-27949; GCF_000770925.1_DSM-6489_genomic.fna:GCF_000770925_1_DSM-6489_genomic_fna_NZ_JDTK01000054.1 profile_pos_range=1083-1232 matrix_pos_range=2-1221; GCF_002259745.1_ASM225974v1_genomic.fna:GCF_002259745_1_ASM225974v1_genomic_fna_NZ_MWWW01000053.1 profile_pos_range=1042-1249 matrix_pos_range=1008-1244; GCF_002259755.1_ASM225975v1_genomic.fna:GCF_002259755_1_ASM225975v1_genomic_fna_NZ_MWWY01000037.1 profile_pos_range=133-623 matrix_pos_range=136-41304; GCF_002259755.1_ASM225975v1_genomic.fna:GCF_002259755_1_ASM225975v1_genomic_fna_NZ_MWWY01000073.1 profile_pos_range=926-1097 matrix_pos_range=137-1096; GCF_010667645.1_ASM1066764v1_genomic.fna:GCF_010667645_1_ASM1066764v1_genomic_fna_NZ_WHZV01000016.1 profile_pos_range=645-4230 matrix_pos_range=647-4755; GCF_012932365.1_ASM1293236v1_genomic.fna:GCF_012932365_1_ASM1293236v1_genomic_fna_NZ_JAAIIH010000034.1 profile_pos_range=3-1553 matrix_pos_range=85-1533; GCF_019331735.1_ASM1933173v1_genomic.fna:GCF_019331735_1_ASM1933173v1_genomic_fna_NZ_JAHBBH010000057.1 profile_pos_range=1-11281 matrix_pos_range=1-11248; GCF_019331735.1_ASM1933173v1_genomic.fna:GCF_019331735_1_ASM1933173v1_genomic_fna_NZ_JAHBBH010000070.1 profile_pos_range=732-4909 matrix_pos_range=732-4279; GCF_959020155.1_ERR10149223_bin.28_MetaWRAP_v1.3_MAG_genomic.fna:GCF_959020155_1_ERR10149223_bin_28_MetaWRAP_v1_3_MAG_genomic_fna_NZ_CAUERC010000024.1 profile_pos_range=131-18831 matrix_pos_range=145-23529; GCF_959020155.1_ERR10149223_bin.28_MetaWRAP_v1.3_MAG_genomic.fna:GCF_959020155_1_ERR10149223_bin_28_MetaWRAP_v1_3_MAG_genomic_fna_NZ_CAUERC010000037.1 profile_pos_range=5416-12199 matrix_pos_range=128-12193; GCF_959020155.1_ERR10149223_bin.28_MetaWRAP_v1.3_MAG_genomic.fna:GCF_959020155_1_ERR10149223_bin_28_MetaWRAP_v1_3_MAG_genomic_fna_NZ_CAUERC010000054.1 profile_pos_range=2-2911 matrix_pos_range=3-3867
This was while trying to perform comparisons for multiple genomes. Even while adding comparisons for a single genome, the following error is encountered:
ValueError: Profile GCF_000825065.1_BIC1401212621a.V1_genomic_profile.parquet does not match the existing matrix store contract: unknown genomes GCA_000741495.1_Bifthelum_genomic.fna, GCA_003585845.1_ASM358584v1_genomic.fna, GCA_022640915.1_ASM2264091v1_genomic.fna, GCA_022649135.1_ASM2264913v1_genomic.fna, GCA_022739095.1_ASM2273909v1_genomic.fna, GCA_024104275.1_ASM2410427v1_genomic.fna, GCA_905202265.1_ERR1430398-mag-bin.4_genomic.fna, GCA_905207115.1_ERR260192-mag-bin.2_genomic.fna, GCA_937876495.1_SRR2753156_bin.73_CONCOCT_v1.1_MAG_genomic.fna, GCF_000010425.1_ASM1042v1_genomic.fna, GCF_000196555.1_ASM19655v1_genomic.fna, GCF_000260715.1_ASM26071v1_genomic.fna, GCF_000263635.1_ASM26363v1_genomic.fna, GCF_000499285.1_bifidobacterium_strain7101_genomic.fna, GCF_000522505.1_DSM27321_genomic.fna, GCF_000706765.1_ASM70676v1_genomic.fna, GCF_000737845.1_BBOMBassembly_genomic.fna, GCF_000741135.1_Bifcho_genomic.fna, GCF_000741165.1_Bifbia_genomic.fna, GCF_000741175.1_Bifcal_genomic.fna, GCF_000741215.1_Bifgalrum_genomic.fna, GCF_000741255.1_Bifmag_genomic.fna, GCF_000741285.1_Bifmon_genomic.fna, GCF_000741295.1_Bifpse_sub.glo_genomic.fna, GCF_000741455.1_Bifthe_sub.the_genomic.fna, GCF_000741525.1_Bifboh_genomic.fna, GCF_000741535.1_Bifbou_genomic.fna, GCF_000741575.1_Bifcun_genomic.fna, GCF_000741695.1_Bifreu_genomic.fna, GCF_000741715.1_Bifsag_genomic.fna, GCF_000741765.1_Biftsu_genomic.fna, GCF_000741775.1_Bifsub_genomic.fna, GCF_000741785.1_Bifste_genomic.fna, GCF_000770925.1_DSM-6489_genomic.fna, GCF_000771225.1_DSM-20099_genomic.fna, GCF_000771405.1_DSM-20433_genomic.fna, GCF_000800455.1_ASM80045v1_genomic.fna, GCF_000967265.1_ASM96726v1_genomic.fna, GCF_001025135.1_ASM102513v1_genomic.fna, GCF_001025155.1_ASM102515v1_genomic.fna, GCF_001025175.1_ASM102517v1_genomic.fna, GCF_001025195.1_ASM102519v1_genomic.fna, GCF_001025215.1_ASM102521v1_genomic.fna, GCF_001042595.1_ASM104259v1_genomic.fna, GCF_001042615.1_ASM104261v1_genomic.fna, GCF_001042635.1_ASM104263v1_genomic.fna, GCF_001417815.1_ASM141781v1_genomic.fna, GCF_001546455.1_ASM154645v1_genomic.fna, GCF_001563665.1_ASM156366v1_genomic.fna, GCF_002259745.1_ASM225974v1_genomic.fna, GCF_002259755.1_ASM225975v1_genomic.fna, GCF_002286935.1_ASM228693v1_genomic.fna, GCF_002298605.1_ASM229860v1_genomic.fna, GCF_002451435.1_ASM245143v1_genomic.fna, GCF_002715865.1_ASM271586v1_genomic.fna, GCF_002742445.1_ASM274244v1_genomic.fna, GCF_002802865.1_ASM280286v1_genomic.fna, GCF_002802915.1_ASM280291v1_genomic.fna, GCF_002860365.1_ASM286036v1_genomic.fna, GCF_002860405.1_ASM286040v1_genomic.fna, GCF_003129905.1_ASM312990v1_genomic.fna, GCF_003202695.1_ASM320269v1_genomic.fna, GCF_003202755.1_ASM320275v1_genomic.fna, GCF_003315635.1_ASM331563v1_genomic.fna, GCF_003397585.1_ASM339758v1_genomic.fna, GCF_003951095.1_ASM395109v1_genomic.fna, GCF_003952025.1_ASM395202v1_genomic.fna, GCF_003952945.1_ASM395294v1_genomic.fna, GCF_004155535.1_ASM415553v1_genomic.fna, GCF_008698145.1_ASM869814v1_genomic.fna, GCF_008698235.1_ASM869823v1_genomic.fna, GCF_009078285.1_ASM907828v1_genomic.fna, GCF_009193305.1_ASM919330v1_genomic.fna, GCF_009193355.1_ASM919335v1_genomic.fna, GCF_009299475.1_ASM929947v1_genomic.fna, GCF_009299485.1_ASM929948v1_genomic.fna, GCF_009299505.1_ASM929950v1_genomic.fna, GCF_009371885.1_ASM937188v1_genomic.fna, GCF_009683175.1_ASM968317v1_genomic.fna, GCF_009727065.1_ASM972706v1_genomic.fna, GCF_010667645.1_ASM1066764v1_genomic.fna, GCF_010667685.1_ASM1066768v1_genomic.fna, GCF_012932365.1_ASM1293236v1_genomic.fna, GCF_012932375.1_ASM1293237v1_genomic.fna, GCF_012932425.1_ASM1293242v1_genomic.fna, GCF_012932445.1_ASM1293244v1_genomic.fna, GCF_012932675.1_ASM1293267v1_genomic.fna, GCF_014898155.1_ASM1489815v1_genomic.fna, GCF_014898175.1_ASM1489817v1_genomic.fna, GCF_016101585.1_ASM1610158v1_genomic.fna, GCF_016899725.1_ASM1689972v1_genomic.fna, GCF_018555385.1_ASM1855538v1_genomic.fna, GCF_018555435.2_ASM1855543v2_genomic.fna, GCF_018555455.1_ASM1855545v1_genomic.fna, GCF_019331675.1_ASM1933167v1_genomic.fna, GCF_019331715.1_ASM1933171v1_genomic.fna, GCF_019331725.1_ASM1933172v1_genomic.fna, GCF_019331735.1_ASM1933173v1_genomic.fna, GCF_019331775.1_ASM1933177v1_genomic.fna, GCF_019331805.1_ASM1933180v1_genomic.fna, GCF_019469425.1_ASM1946942v1_genomic.fna, GCF_020884755.1_ASM2088475v1_genomic.fna, GCF_022655035.1_ASM2265503v1_genomic.fna, GCF_026537325.1_ASM2653732v1_genomic.fna, GCF_029392075.1_ASM2939207v1_genomic.fna, GCF_029392315.1_ASM2939231v1_genomic.fna, GCF_029395435.1_ASM2939543v1_genomic.fna, GCF_029395535.1_ASM2939553v1_genomic.fna, GCF_029433295.1_ASM2943329v1_genomic.fna, GCF_029433335.1_ASM2943333v1_genomic.fna, GCF_029433395.1_ASM2943339v1_genomic.fna, GCF_030758775.1_ASM3075877v1_genomic.fna, GCF_900129045.1_IMG-taxon_2563366502_annotated_assembly_genomic.fna, GCF_959020145.1_ERR10149223_bin.5_MetaWRAP_v1.3_MAG_genomic.fna, GCF_959020155.1_ERR10149223_bin.28_MetaWRAP_v1.3_MAG_genomic.fna, GCF_959028125.1_ERR10149229_bin.50_MetaWRAP_v1.3_MAG_genomic.fna