Use cases for DDI

[ypriverol]

This is a List of uses cases we should cover divided by Category, Type of User, etc:

• Dataset Search:

  • Search by Terms, specific Text

• Refine the search by a set of filters and categories:

  • Organism
  • Tissue
  • Disease
  • Omics Type: Genomics, Metabolomics, Proteomics
  • Instrument Type
  • Type of experiment
  • Repository Name
  • Post-translational modification
  • Year

  Examples:
  - Find all data sets from Alzheimer’s patients that have RNA-seq (Researcher).
  - Proteomics datasets from 2014 in brain cancer that use Q-Exactive (Researcher).

• It would be interesting to have statistics about repositories:

  • Datasets by Repository or Database
  • Datasets by Omics Type
  • Datasets by Tissue
  • Datasets by Disease and Tissue

• A block box should be presented with the more frequently terms, they should be represented in two dimensions using repositories and field. Fields to be included:

  • Description
  • Title
  • Sample protocol
  • Data Protocol

• The main menu should contain the following options:

  • The landing page with search boxes by different categories.
  • The browse should provide a way of searching by different words and filter the information
  • The Database page should contain all the databases included in the DDIndex
  • The Help Page
  • The API Page

• The Dataset Page should contain information about each dataset

  • MorLikeThis option, a column with all the datasets close to the viewed dataset.
  • Description of the dataset
  • Title of the dataset
  • The publications related with the dataset (title, abstract, PUBMED ID, almetrics icon)
  • The protocols related with the dataset
  • The information about the biological entities, protocols should be shown.