New Providers

[ypriverol]

• GWAS Central: http://help.gwascentral.org/info/web-services/search/ (GWAS)
• E Mouse: http://www.emouseatlas.org/emage/home.php (Transcriptomics)
• Intact: Protein -(Protein Interactions.)
• BioModel. (BioModels/System Biology)
• Brain Map Project http://brain-map.org/ (Transcriptomics)

Pathways:

• Reactome
• Wikipathways (http://www.wikipathways.org/index.php/Help:WikiPathways_Webservice/API), API http://webservice.wikipathways.org/listPathways
• KEEG (http://www.kegg.jp/kegg/rest/keggapi.html)

Proteomics:

• Yed Med Database: https://yped.med.yale.edu:8443/repository/
• ProteomeForms : http://repository.topdownproteomics.org/proteoforms/?DataSetId=1
• ProteomicsDB : https://www.proteomicsdb.org/
• PaxDB.
• Chorus

Genomics:

• dbGap : https://www.ncbi.nlm.nih.gov/gap
• SRA : https://www.ncbi.nlm.nih.gov/sra
• Epigenomics: http://www.roadmapepigenomics.org/
• Rat Genome Database: http://rgd.mcw.edu/
• https://gdc-portal.nci.nih.gov/projects/
• GEO http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=GDS4356
• ClinVar : https://www.ncbi.nlm.nih.gov/clinvar/

Structures:

• Biological Magnetic Resonance Data Bank http://www.bmrb.wisc.edu/
• PDB : www.rcsb.org/pdb/

Transcriptomics:

• Gemma: http://www.chibi.ubc.ca/Gemma/home.html

Other Databases

• SILVA: https://www.arb-silva.de/
• BRENDA: www.brenda-enzymes.org
• HPA : http://www.proteinatlas.org
• EGA: https://www.ebi.ac.uk/ega/home
• UniProt: http://www.uniprot.org/
• STRING-db: http://string-db.org/
• MINT: http://mint.bio.uniroma2.it/mint
• ArrayExpress: https://www.ebi.ac.uk/arrayexpress/
• BioModels: https://www.ebi.ac.uk/biomodels-main/
• ChEBI: https://www.ebi.ac.uk/chebi/
• ChEMBL: https://www.ebi.ac.uk/chembl/
• ENA: http://www.ebi.ac.uk/ena
• Ensembl: http://www.ensembl.org/index.html
• Ensembl Genomes: http://ensemblgenomes.org/
• IntAct: http://www.ebi.ac.uk/intact/
• InterPro: https://www.ebi.ac.uk/interpro/
• MetaboLights: http://www.ebi.ac.uk/metabolights/
• PDBe: https://www.ebi.ac.uk/pdbe/
• Pfam: http://pfam.xfam.org/
• PRIDE: https://www.ebi.ac.uk/pride/archive/
• The Expression Atlas: https://www.ebi.ac.uk/gxa/home
• CATH-Gene3D: http://www.cathdb.info/
• IUPHAR/BPS: http://www.guidetopharmacology.org/
• Pathogen-Host Interaction Database: http://www.phi-base.org/
• Biomedical Atlas Centre: http://www.elixir-uk.org/expression-atlases
• ORCAE: http://bioinformatics.psb.ugent.be/orcae/
• PLAZA: http://bioinformatics.psb.ugent.be/plaza/
• NGS-Logistics: https://ngsl.esat.kuleuven.be
• BBMRI.fi: http://www.bbmri.fi
• IS Finder: https://www-is.biotoul.fr
• CRISPRdb: http://crispr.u-psud.fr/crispr/
• MetExplore: http://www.metexplore.fr
• GiantVirus: http://www.giantvirus.org
• RNAspace: http://www.rnaspace.org
• GnpIS: http://urgi.versailles.inra.fr/gnpis
• Orphanet: http://www.orpha.net
• RaDICO: http://www.radico.fr/fr/
• ACSN: https://acsn.curie.fr
• IMGT: http://www.imgt.org
• HOVERGEN: http://pbil.univ-lyon1.fr/databases/hovergen.php
• HOGENOM: http://doua.prabi.fr/databases/hogenom/home.php?contents=query
• HOMOLENS: http://pbil.univ-lyon1.fr/databases/homolens.php
• ProDom
• CAZy
• MINT
• ASPicDB
• DIGIT
• MobiDB
• LiceBase
• CoarkOakDB
• TreePortal
• GOMapMan: http://www.gomapman.org
• BASE: http://base.thep.lu.se
• FireDB
• MoDEL
• CellBase
• CentrosomeDB
• ABS
• HCAD
• HPA
• Bgee
• EPD
• GlycoSuiteDB
• SugarBind
• Progenetix
• Arraymap
• OrthoDB
• ImmunoDB
• miROrtho
• http://bigg.ucsd.edu/advanced_search
• PROSITE
• Reactome: www.reactome.org
• Enzyme Portal: www.ebi.ac.uk/enzymeportal
• IntEnz: www.ebi.ac.uk/intenz
• GeneCards
• ProtoNet
• CATH/Gene3D: http://www.cathdb.info/
• Biomedical Atlas Centre: emouseatlas.org, hudsen.org, echickatlas.org
• IUPHAR/BPS Guide to Pharmacology: www.guidetopharmacology.org
• PHI Base: http://www.phi-base.org