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fix: resolve 19 mypy errors in agent_loop + ruff clean #42

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Run time

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Job	Run time
Python 3.11 on windows-latest	37s
Python 3.11 on macos-latest	12s
Python 3.11 on ubuntu-latest	16s
Python 3.12 on ubuntu-latest	16s
Python 3.12 on windows-latest	1m 18s
Python 3.12 on macos-latest	18s
	2m 57s