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User Guide

Prerequisites

  • Python: 3.9+
  • Rust: 1.70+
  • Nextflow: 22.10+

Setup (recommended virtual environment)

cd /Users/rismanadnan/RAM-Papers/Paper1

# Create and activate venv
python3 -m venv .venv
source .venv/bin/activate

# Install Python dependencies
pip install -r requirements.txt

Run the smoke workflow

# From the project root
nextflow run workflows/smoke.nf

If a task fails due to missing Python deps (classical ML)

The Python classical ML smoke requires local Python dependencies. After creating a venv and running pip install -r requirements.txt as above, re-run with resume:

nextflow run workflows/smoke.nf -resume

Current smoke status

  • CNN (DL): green
  • LLM: green
  • RL: green
  • RNN (DL): green
  • Python Classical ML: requires venv + pip install -r requirements.txt; then -resume

Troubleshooting

  • If Nextflow isn’t found: install via brew install nextflow (macOS) or see Nextflow docs.
  • If pip install fails on Apple Silicon: ensure a recent Python and consider pip install --upgrade pip setuptools wheel first.
  • To exit venv: deactivate.