diff --git a/R/CheckBias.R b/R/CheckBias.R index 0f61d63..ae87ebc 100644 --- a/R/CheckBias.R +++ b/R/CheckBias.R @@ -1,15 +1,15 @@ #' Cbs #' -#' Cbs is to check possible bias factor using the method in goseq +#' Cbs is to check possible bias factor using the method in goseq#### May you add the method/function name? somebody may want to check the details of the method #' -#' @param re.gene.based Gene based table +#' @param re.gene.based Gene based table #### what the meaning of gene based table? #' @param ad The possible bias factor #' @param sub_feature The possible bias factor -#' @param threshold threshold used -#' @param genomeID which genome -#' @param geneID which type of gene ID -#' @param gene_model Gene model -#' @param method which method +#' @param threshold threshold used #### The P-value threshold to remove all items above that +#' @param genomeID which genome #### the input genome? or the the reference genome such as hg19 or mm10? +#' @param geneID which type of gene ID #### litteral geneID or the type of gene ID +#' @param gene_model Gene model #### gene model for what? / do you have the default one (details needed)? +#' @param method which method #### the method for what??? #' #' @return A data frame that includes gene ID, status of differential gene #' and probability weight function @@ -80,4 +80,4 @@ Cbs <- function(re.gene.based, ad = "GL", sub_feature = NULL, return(pwf.DE_interest) -} \ No newline at end of file +}