From 036f5fea1c36a6252cd70b502042e646cda718ea Mon Sep 17 00:00:00 2001 From: Zhen Gao Date: Sat, 18 Feb 2017 17:54:34 -0500 Subject: [PATCH] ZG-comments-Lcb.R --- R/Lcb.R | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/R/Lcb.R b/R/Lcb.R index 2049b36..a5cc69f 100644 --- a/R/Lcb.R +++ b/R/Lcb.R @@ -1,12 +1,12 @@ #' LRtestBias #' -#' Logistic regression to check bias +#' Logistic regression to check bias #### Logistic regression from ?? to ?? to check the bias from exon length #' -#' @param jscs_genewise_object gene based table returned -#' from ReformatData and MakeGeneWiseTable_JunctionSeq -#' @param genewise.pvalue whether you use smallest p value or geneWisePadj -#' @param sig.threshold threshold to define differential gene list -#' @param type whether you are interested in exon or splicing junction +#' @param jscs_genewise_object gene based table returned #### ?? The table of genes and their XXYY features ？？ +#' from ReformatData and MakeGeneWiseTable_JunctionSeq #### from ReformatData function and YY function +#' @param genewise.pvalue whether you use smallest p value or geneWisePadj #### a logical value +#' @param sig.threshold threshold to define differential gene list #### p-value threshold +#' @param type whether you are interested in exon or splicing junction #### exon or splicing junction, based on user's interests #' @param loc.x indicates x coordinate of p value from logistic regression #' @param loc.y indicates y coordinate of p value from logistic regression #' @param y_lim defining the largest number of exons in y axis in boxplot @@ -68,4 +68,4 @@ LRtestBias <- function(jscs_genewise_object, genewise.pvalue = "geneWisePadj", return(re) -} \ No newline at end of file +}