From 0c9cb9965a70f0ac9a44611de64a7a8405c93139 Mon Sep 17 00:00:00 2001 From: Zhen Gao Date: Mon, 20 Feb 2017 10:40:33 -0500 Subject: [PATCH] ZG-comments-Run_pathwaysplice.R --- R/Run_pathwaysplice.R | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/R/Run_pathwaysplice.R b/R/Run_pathwaysplice.R index ee80088..f960666 100644 --- a/R/Run_pathwaysplice.R +++ b/R/Run_pathwaysplice.R @@ -1,18 +1,18 @@ #' Run_pathwaysplice #' -#' Perform pathwaysplice in one step +#' Perform pathwaysplice in one step #### pathwaysplice #' -#' @param re.gene.based gene based results +#' @param re.gene.based gene based results #### may you add details of the gene based results? #' @param adjust bias factor to be adjusted -#' @param sub_feature feature to be checked -#' @param threshold threshold to be used for adjustment -#' @param genomeID gene to be used +#' @param sub_feature feature to be checked #### details of the checking +#' @param threshold threshold to be used for adjustment #### p-value threshold +#' @param genomeID gene to be used #### I guess a mistake here, genome or gene? #' @param geneID geneID to be used -#' @param gene_model gene model to be used -#' @param method method to be used +#' @param gene_model gene model to be used #### the meaning of gene model +#' @param method method to be used #### what's the method? statistics method, modeling method? etc #' @param gene2cat get sets defined by users #' -#' @return a list that has gene set enrichment analysis results +#' @return a list that has gene set enrichment analysis results #### a list with gene set enrichment analysis results #' @export #' #' @examples @@ -732,4 +732,4 @@ GetStaisitcs4GO<-function(GO.wall.DE_interest,mds.11.sample){ return(re3) -} \ No newline at end of file +}