From bd6bd6b62ca62bc0ec3da04f203541f14f781d48 Mon Sep 17 00:00:00 2001 From: Zhen Gao Date: Mon, 20 Feb 2017 11:14:40 -0500 Subject: [PATCH] ZG-comments-enMap2.R --- R/enMap2.R | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/R/enMap2.R b/R/enMap2.R index 8995834..264e07a 100644 --- a/R/enMap2.R +++ b/R/enMap2.R @@ -1,18 +1,18 @@ #' enrichmentMap #' -#' enrichmentMap is used to draw network based on similarities between GOs +#' enrichmentMap is used to draw network based on similarities between GOs #### draw interaction network? #' #' @param GoSeqRes object returned from Run_pathwaysplice -#' @param gene.set.type whether you are interested in GO, KEGG, or other pathways +#' @param gene.set.type whether you are interested in GO, KEGG, or other pathways #### GO, KEGG, or other pathways according your interests #' @param n maximum number of category to shown #' @param fixed if set to FALSE, will invoke tkplot #' @param vertex.label.font font size of vertex label -#' @param SimilarityThreshold threshold for defining similarity between GOs -#' @param ... additional parameter +#' @param SimilarityThreshold threshold for defining similarity between GOs +#' @param ... additional parameter #' @export #' @return A figure for visualizing enrichment network #' -#' @author Aimin created this funciton based on enrichMap function in G Yu's DOSE R package +#' @author Aimin created this funciton based on enrichMap function in G Yu's DOSE R package # based on the DOSE R package by G Yu et al. #' #' @examples #' @@ -153,4 +153,4 @@ getIdx <- function(v, MIN, MAX) { } intervals <- seq(MIN, MAX, length.out = 100) max(which(intervals <= v)) -} \ No newline at end of file +}