FileOp.h

#pragma once
//
//  FileOp.hpp
//  CasperOffTarget
//
//  Created by Brian Mendoza on 6/4/18.
//  Copyright © 2018 University of Tennessee. All rights reserved.
//

#ifndef FileOp_h
#define FileOp_h

#include <stdio.h>
#include <iostream>
#include <fstream>
#include <string>
#include <vector>
#include <cassert>

/* Class contains the operators for manipulating both generic files and the .cspr and target query file specific operations,
 * which are the two main types of files that are processed in this program. */
class FileOp {
	/* General functions for reading a file */
public:
	FileOp();
	void open(std::string);
	std::string getLine(int);
	std::vector<std::string> getSepLine(int, char);
	bool newLine();
	void closeFile();
	bool endFile();

	/* Functions for manipulating .cspr files */
private:
	std::vector<std::string> Msplit(const std::string &text, char sep);

private:  // Private machinery for parsing the file
	std::ifstream* FileStream;
	std::string filename;
};

class WriteFile {
	/* General functions for writing to a file */
public:
	void openWrite(std::string);
	void write(std::string);
	void write(long);
	void write(double);
	void writeLine(std::string);
	void close();
private:
	std::ofstream outputfile;
};

#endif /* FileOp_hpp */
#pragma once