AlphaFold2 predictions

[kalifadan]

Hey,
Where can I find the embeddings produce by AlphaFold as you wrote in your paper?
I want given a protein (amino acid sequence) to be able to get its embedding vector.
Thank you,
Dan

[xinformatics]

Hey Dan, please see the following GitHub repo:

https://github.com/xinformatics/alphafold

It contains instructions to extract the embeddings from the Alphafold model given the Amino acid sequence as input.

The repo is more than two years old so I am not sure if the code still works with the currently available Alphafold version.

Hope it helps.

Thanks,
Shashank