After installinng TandemTools in a new conda environment with all requirements (including separately installing jellyfish) there was an error while running test:
$ ./tandemquast.py --nano test_data/simulated_reads.fasta test_data/simulated_polished.fa -o test_data/simulated_res
2025-11-28 10:14:08 TandemMapper started
*********************************
K-mers selection started...
Analyzing simulated-polished assembly
1615 k-mers do not occur in reads!
Distribution of missed k-mers plot is saved to /home/xxx/distr/TandemTools/simulated_res/simula
ted-polished_missedkmers_hist.png
Histogram of k-mer occurrences plot is saved to /home/xxx/distr/TandemTools/simulated_res/simul
ated-polished_kmers_hist.png
101279 rare k-mers were selected
Distribution of selected k-mers plot is saved to /home/xxx/distr/TandemTools/simulated_res/simu
lated-polished_selected_kmers.png
26562 unique solid k-mers were selected
*********************************
Read mapping started...
Total 1226 alignments
Longest chains saved to /home/xxx/distr/TandemTools/simulated_res/simulated-polished_alignment.bed
Traceback (most recent call last):
File "/home/xxx/distr/TandemTools/tandemmapper.py", line 80, in <module>
main()
File "/home/xxx/miniconda3/envs/ttools/lib/python3.10/site-packages/click/core.py", line 1485, in __call__
return self.main(*args, **kwargs)
File "/home/xxx/miniconda3/envs/ttools/lib/python3.10/site-packages/click/core.py", line 1406, in main
rv = self.invoke(ctx)
File "/home/xxx/miniconda3/envs/ttools/lib/python3.10/site-packages/click/core.py", line 1269, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/xxx/miniconda3/envs/ttools/lib/python3.10/site-packages/click/core.py", line 824, in invoke
return callback(*args, **kwargs)
File "/home/xxx/distr/TandemTools/tandemmapper.py", line 72, in main
make_alignments.do(assemblies, reads_fname, reads_real_coords, out_dir, threads, no_reuse, no_nucl_alignment)
File "/home/xxx/distr/TandemTools/scripts/make_alignments.py", line 208, in do
make_plotly_noise(assemblies, all_data, out_dir)
File "/home/xxx/distr/TandemTools/scripts/reporting.py", line 124, in make_plotly_noise
fig.update_yaxes(range=[-0.05,1.05],title_text="% deviated reads", titlefont=dict(size=18), tickfont=dict(size=18),
File "/home/v/miniconda3/envs/ttools/lib/python3.10/site-packages/plotly/graph_objs/_figure.py", line 23657, in update_yaxes
obj.update(patch, overwrite=overwrite, **kwargs)
File "/home/xxx/miniconda3/envs/ttools/lib/python3.10/site-packages/plotly/basedatatypes.py", line 5195, in update
BaseFigure._perform_update(self, kwargs, overwrite=overwrite)
File "/home/xxx/miniconda3/envs/ttools/lib/python3.10/site-packages/plotly/basedatatypes.py", line 3949, in _perform_update
raise err
ValueError: Invalid property specified for object of type plotly.graph_objs.layout.YAxis: 'titlefont'
Did you mean "tickfont"?
Valid properties: ...
Bad property path:
titlefont
^^^^^^^^^
2025-11-28 10:14:08 TandemQUAST started
*********************************
Running TandemMapper...
ERROR: tandemMapper failed! Please check input files and tandemMapper output. TandemQUAST cannot proceed without alignments
Hi!
After installinng TandemTools in a new conda environment with all requirements (including separately installing jellyfish) there was an error while running test:
python 3.10
plotly 6.5.0
Could you please help me with this?
Thanks,
Vitaly