[MetaMiner] Adding the workflow to GNPS and the documentation

[lfnothias]

I am posting an issue to keep track of this.
People in the lab wants to use it, but the current workflow (RIPPQuest) is outdated
https://gnps.ucsd.edu/ProteoSAFe/index.jsp?params=%7B%22workflow%22:%22RIPPQUEST%22%7D

See CCMS-UCSD/GNPS_Workflows#228

[andrekind17]

MetaMiner workflow on GNPS is not actually working. The same from command line indeed. The pipeline is not able to process .gbk and while dealing with .fasta files it encounters a problem in ORF recognition