plot_imputed_features(
cistopic_obj,
reduction_name='UMAP',
imputed_data=imputed_acc_obj,
features=[markers_dict[x].index.tolist()[0] for x in ['DediffT_C345', 'DiffT_C1', 'Normal_C2']],
scale=False,
num_columns=3,
save = './outs/plot_imputed_features_DediffT_C345.pdf'
)
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
Cell In[53], line 1
----> 1 plot_imputed_features(
2 cistopic_obj,
3 reduction_name='UMAP',
4 imputed_data=imputed_acc_obj,
5 features=[markers_dict[x].index.tolist()[0] for x in ['DediffT_C345', 'DiffT_C1', 'Normal_C2']],
6 scale=False,
7 num_columns=3,
8 save = './outs/plot_imputed_features_DediffT_C345.pdf'
9 )
File [~/miniconda3/envs/scenicplus/lib/python3.11/site-packages/pycisTopic/clust_vis.py:845](http://localhost:8888/lab/tree/pycisTopic/~/miniconda3/envs/scenicplus/lib/python3.11/site-packages/pycisTopic/clust_vis.py#line=844), in plot_imputed_features(cistopic_obj, reduction_name, imputed_data, features, scale, cmap, dot_size, alpha, selected_cells, figsize, num_columns, save)
843 scalarmappaple = cm.ScalarMappable(norm=normalize, cmap=cmap)
844 scalarmappaple.set_array(color_data)
--> 845 plt.colorbar(scalarmappaple)
846 if num_columns == 1:
847 if save is not None:
File [~/miniconda3/envs/scenicplus/lib/python3.11/site-packages/matplotlib/pyplot.py:2533](http://localhost:8888/lab/tree/pycisTopic/~/miniconda3/envs/scenicplus/lib/python3.11/site-packages/matplotlib/pyplot.py#line=2532), in colorbar(mappable, cax, ax, **kwargs)
2528 if mappable is None:
2529 raise RuntimeError('No mappable was found to use for colorbar '
2530 'creation. First define a mappable such as '
2531 'an image (with imshow) or a contour set ('
2532 'with contourf).')
-> 2533 ret = gcf().colorbar(mappable, cax=cax, ax=ax, **kwargs)
2534 return ret
File [~/miniconda3/envs/scenicplus/lib/python3.11/site-packages/matplotlib/figure.py:1273](http://localhost:8888/lab/tree/pycisTopic/~/miniconda3/envs/scenicplus/lib/python3.11/site-packages/matplotlib/figure.py#line=1272), in FigureBase.colorbar(self, mappable, cax, ax, use_gridspec, **kwargs)
1271 if cax is None:
1272 if ax is None:
-> 1273 raise ValueError(
1274 'Unable to determine Axes to steal space for Colorbar. '
1275 'Either provide the *cax* argument to use as the Axes for '
1276 'the Colorbar, provide the *ax* argument to steal space '
1277 'from it, or add *mappable* to an Axes.')
1278 fig = ( # Figure of first Axes; logic copied from make_axes.
1279 [*ax.flat] if isinstance(ax, np.ndarray)
1280 else [*ax] if np.iterable(ax)
1281 else [ax])[0].get_figure(root=False)
1282 current_ax = fig.gca()
ValueError: Unable to determine Axes to steal space for Colorbar. Either provide the *cax* argument to use as the Axes for the Colorbar, provide the *ax* argument to steal space from it, or add *mappable* to an Axes.
Hello:
Could you please let me know how to solve this problem? Thanks a lot