hello, thanks for this great tool !!!
I try to learn this tool by the toturial.
However, I cannot run this step, since the var "atac_anndata" only appear once:
from pycisTopic.label_transfer import *
label_dict = label_transfer(rna_anndata,
atac_anndata,
labels_to_transfer = ['Seurat_cell_type'],
variable_genes = True,
methods = ['ingest', 'harmony', 'bbknn', 'scanorama', 'cca'],
return_label_weights = False,
_temp_dir= tmpDir + 'ray_spill')
Could you please tell how to define it ?
Thanks !!!!
hello, thanks for this great tool !!!
I try to learn this tool by the toturial.
However, I cannot run this step, since the var "atac_anndata" only appear once:
Could you please tell how to define it ?
Thanks !!!!