from numpy import * : error

[q1134269149]

hi,
I use the LSC to correct the long reads by short reads. It produced a large number of intermediate files in temp file, include:

drwxrwxr-x. 2 qinh qinh 4.0K Nov 28 19:52 log
-rw-rw-r--. 1 qinh qinh 919M Nov 28 22:34 LR.fa.cps
-rw-rw-r--. 1 qinh qinh 262M Nov 28 22:45 LR.fa.cps.1.bt2
-rw-rw-r--. 1 qinh qinh 166M Nov 28 22:45 LR.fa.cps.2.bt2
-rw-rw-r--. 1 qinh qinh  14M Nov 28 22:34 LR.fa.cps.3.bt2
-rw-rw-r--. 1 qinh qinh 166M Nov 28 22:34 LR.fa.cps.4.bt2
-rw-rw-r--. 1 qinh qinh 262M Nov 28 22:55 LR.fa.cps.rev.1.bt2
-rw-rw-r--. 1 qinh qinh 166M Nov 28 22:55 LR.fa.cps.rev.2.bt2
-rw-rw-r--. 1 qinh qinh 1.6G Nov 28 22:34 LR.fa.idx
-rw-rw-r--. 1 qinh qinh 358M Nov 28 22:25 LR.fa.readname
-rw-rw-r--. 1 qinh qinh 647M Nov 28 22:23 SR.fa.aa.cps
-rw-rw-r--. 1 qinh qinh  33M Nov 28 22:56 SR.fa.aa.cps.sam
-rw-rw-r--. 1 qinh qinh 807M Nov 28 22:23 SR.fa.aa.idx
-rw-rw-r--. 1 qinh qinh 646M Nov 28 22:23 SR.fa.ab.cps
-rw-rw-r--. 1 qinh qinh  33M Nov 28 22:56 SR.fa.ab.cps.sam
-rw-rw-r--. 1 qinh qinh 806M Nov 28 22:23 SR.fa.ab.idx
-rw-rw-r--. 1 qinh qinh 647M Nov 28 22:23 SR.fa.ac.cps
-rw-rw-r--. 1 qinh qinh  33M Nov 28 22:56 SR.fa.ac.cps.sam
-rw-rw-r--. 1 qinh qinh 807M Nov 28 22:23 SR.fa.ac.idx
-rw-rw-r--. 1 qinh qinh 647M Nov 28 22:23 SR.fa.ad.cps
-rw-rw-r--. 1 qinh qinh  33M Nov 28 22:56 SR.fa.ad.cps.sam
-rw-rw-r--. 1 qinh qinh 807M Nov 28 22:23 SR.fa.ad.idx
-rw-rw-r--. 1 qinh qinh 648M Nov 28 22:23 SR.fa.ae.cps
-rw-rw-r--. 1 qinh qinh  33M Nov 29 00:24 SR.fa.ae.cps.sam
-rw-rw-r--. 1 qinh qinh 806M Nov 28 22:23 SR.fa.ae.idx
-rw-rw-r--. 1 qinh qinh 648M Nov 28 22:23 SR.fa.af.cps
-rw-rw-r--. 1 qinh qinh  33M Nov 28 22:56 SR.fa.af.cps.sam
-rw-rw-r--. 1 qinh qinh 805M Nov 28 22:23 SR.fa.af.idx
-rw-rw-r--. 1 qinh qinh 647M Nov 28 22:24 SR.fa.ag.cps
-rw-rw-r--. 1 qinh qinh  33M Nov 28 22:56 SR.fa.ag.cps.sam
-rw-rw-r--. 1 qinh qinh 807M Nov 28 22:24 SR.fa.ag.idx
-rw-rw-r--. 1 qinh qinh 647M Nov 28 22:22 SR.fa.ah.cps
-rw-rw-r--. 1 qinh qinh  33M Nov 29 01:21 SR.fa.ah.cps.sam
-rw-rw-r--. 1 qinh qinh 807M Nov 28 22:22 SR.fa.ah.idx
-rw-rw-r--. 1 qinh qinh 646M Nov 28 22:24 SR.fa.ai.cps
-rw-rw-r--. 1 qinh qinh  33M Nov 28 22:56 SR.fa.ai.cps.sam
-rw-rw-r--. 1 qinh qinh 806M Nov 28 22:24 SR.fa.ai.idx
-rw-rw-r--. 1 qinh qinh 646M Nov 28 22:23 SR.fa.aj.cps
-rw-rw-r--. 1 qinh qinh  34M Nov 28 23:40 SR.fa.aj.cps.sam
-rw-rw-r--. 1 qinh qinh 805M Nov 28 22:23 SR.fa.aj.idx
-rw-rw-r--. 1 qinh qinh 647M Nov 28 22:24 SR.fa.ak.cps
-rw-rw-r--. 1 qinh qinh  33M Nov 29 00:10 SR.fa.ak.cps.sam
-rw-rw-r--. 1 qinh qinh 806M Nov 28 22:24 SR.fa.ak.idx
-rw-rw-r--. 1 qinh qinh 646M Nov 28 22:22 SR.fa.al.cps
-rw-rw-r--. 1 qinh qinh  35M Nov 29 00:43 SR.fa.al.cps.sam
-rw-rw-r--. 1 qinh qinh 806M Nov 28 22:22 SR.fa.al.idx
-rw-rw-r--. 1 qinh qinh 647M Nov 28 22:24 SR.fa.am.cps
-rw-rw-r--. 1 qinh qinh  33M Nov 29 00:34 SR.fa.am.cps.sam
-rw-rw-r--. 1 qinh qinh 806M Nov 28 22:24 SR.fa.am.idx
-rw-rw-r--. 1 qinh qinh 647M Nov 28 22:23 SR.fa.an.cps
-rw-rw-r--. 1 qinh qinh  34M Nov 28 23:53 SR.fa.an.cps.sam
-rw-rw-r--. 1 qinh qinh 803M Nov 28 22:23 SR.fa.an.idx
-rw-rw-r--. 1 qinh qinh 647M Nov 28 22:23 SR.fa.ao.cps
-rw-rw-r--. 1 qinh qinh  37M Nov 28 23:47 SR.fa.ao.cps.sam
-rw-rw-r--. 1 qinh qinh 806M Nov 28 22:23 SR.fa.ao.idx
-rw-rw-r--. 1 qinh qinh 646M Nov 28 22:23 SR.fa.ap.cps
-rw-rw-r--. 1 qinh qinh  33M Nov 28 23:39 SR.fa.ap.cps.sam
-rw-rw-r--. 1 qinh qinh 805M Nov 28 22:23 SR.fa.ap.idx
-rw-rw-r--. 1 qinh qinh 3.1G Nov 28 19:52 SR.fa.cps
-rw-rw-r--. 1 qinh qinh    0 Nov 28 19:52 SR.fa.cps.nav
-rw-rw-r--. 1 qinh qinh 399M Nov 28 19:52 SR.fa.cps.sam
-rw-rw-r--. 1 qinh qinh 4.1G Nov 28 19:52 SR.fa.idx
-rw-rw-r--. 1 qinh qinh 4.1G Nov 25 05:20 SR_uniq.fa

But, the output file is empty. I I looked into the log and found the following errors:

===samParser SR.??.cps.nav:===
Traceback (most recent call last):
  File "./samParser.py", line 6, in <module>
    import numpy
ImportError: No module named numpy
Traceback (most recent call last):
  File "./samParser.py", line 6, in  File "./    import numpy
ImportError: No module named numpy
ImportError: No module named numpy
ort numpy
ImportError: No module named numpy
ImportError: No module named numpy
2 days, 18:49:37.152095
===cat SR.??.cps:===
2 days, 18:50:13.373566
===cat SR.??.idx:===
2 days, 18:51:18.928611
===cat SR.??.cps.sam :===
2 days, 18:51:33.141155
===cat SR.??.cps.nav :===
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.aa.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.ab.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.ac.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.ad.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.ae.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.af.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.ag.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.ah.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.ai.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.aj.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.ak.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.al.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.am.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.an.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.ao.cps.nav: No such file or directory
cat: /pub3/qinh/At.Nano/long_reads_corr/temp/SR.fa.ap.cps.nav: No such file or directory
2 days, 18:51:33.178351
===genLR_SRmapping SR.??.cps.nav:===
Traceback (most recent call last):
  File "./genLR_SRmapping.py", line 5, in <module>
    from numpy import *
ImportError: No module named numpy
2 days, 18:51:33.363527
===split LR_SR.map:===
Traceback (most recent call last):
  File "runLSC.py", line 535, in <module>
    LR_SR_map_NR = int(commands.getstatusoutput('wc -l ' + temp_foldername +"LR_SR.map")[1].split()[0])
ValueError: invalid literal for int() with base 10: 'wc:'

The python 2.7 environment I used was built by anaconda, and I confirmed that the numpy module was installed. So I don't know why this mistake was reported. Could you give me some advice? thank you.