From a1cb1e338c238a55329e44752f398ad54fdaeca2 Mon Sep 17 00:00:00 2001 From: Kyle Ferriter Date: Fri, 5 Sep 2025 13:36:27 -0400 Subject: [PATCH] Update cool-seq-tool init script --- clinvar_gk_pilot/main.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/clinvar_gk_pilot/main.py b/clinvar_gk_pilot/main.py index f68e1cb..6c9e673 100644 --- a/clinvar_gk_pilot/main.py +++ b/clinvar_gk_pilot/main.py @@ -389,10 +389,10 @@ def partition_file_lines_gz(local_file_path_gz: str, partitions: int) -> List[st def initialize_variation_normalizer_ref_data(): """Download and import the variation normalizer reference data script at runtime""" # URL to the script - script_url = "https://raw.githubusercontent.com/GenomicMedLab/variation-normalizer-manuscript/issue-116/analysis/download_cool_seq_tool_files.py" + script_url = "https://raw.githubusercontent.com/GenomicMedLab/variation-normalizer-manuscript/a5b4f40e696c3c607e770e48e66efcf03a56336f/analysis/download_cool_seq_tool_files.py" # Download the script - response = requests.get(script_url, timeout=30) + response = requests.get(script_url, timeout=10) response.raise_for_status() # Create a temporary file and write the script content