diff --git a/.gitignore b/.gitignore index 1284cb0..d0cc217 100644 --- a/.gitignore +++ b/.gitignore @@ -171,4 +171,8 @@ images/ labels/ failed_downloads.csv metadata.csv -data.yaml \ No newline at end of file +data.yaml + +# orchestrateur - tests Timothée +orchestrateur/ +flows/ \ No newline at end of file diff --git a/biolit/lien_doris.py b/biolit/lien_doris.py new file mode 100644 index 0000000..0a4a04e --- /dev/null +++ b/biolit/lien_doris.py @@ -0,0 +1,58 @@ +import requests +import time +from bs4 import BeautifulSoup +import polars as pl + +import structlog + +from biolit import DATADIR + +LOGGER = structlog.get_logger() + + +def scrapping_site_lien_doris() -> pl.DataFrame: + offset = 0 + lien_doris_all_data = [] + + while True: + url = f"https://doris.ffessm.fr/find/species/(offset)/{offset}/(state)/*/(sortby)/recent/(manualSort)/1/(view)/list" + LOGGER.info(f"Scraping offset = {offset}") + + try: + response = requests.get(url, timeout=10) + + if response.status_code != 200: + LOGGER.info(f"Erreur à l'offset : {offset}") + break + + soup = BeautifulSoup(response.text, "html.parser") + species = soup.find_all("div", class_="specieSearchResult resultLine") + if not species: + LOGGER.info("Fin des pages.") + break + + lien_doris_page_data = [] + for specie in species: + try: + a_tag = specie.find('a', href=True) + lien_doris = a_tag.get("href") + nom_scientifique = a_tag.find("em").get_text(strip=True) + lien_doris_page_data.append({ + "nom_scientifique": nom_scientifique, + "lien_doris": lien_doris, + }) + except Exception as e: + LOGGER.info(f"Erreur parsing espèce : {e}") + continue + lien_doris_all_data.extend(lien_doris_page_data) + offset += len(lien_doris_page_data) + + df = pl.DataFrame(lien_doris_all_data) + df.write_csv(DATADIR / "doris_data.csv") + time.sleep(1) + + except Exception as e: + LOGGER.info(f"Erreur requête : {e}") + break + + return pl.DataFrame(lien_doris_all_data) diff --git a/pyproject.toml b/pyproject.toml index 85e6f21..f9c6ec1 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