From bcc90fcbce82ed1c603bb5e1b67d65814dc805ce Mon Sep 17 00:00:00 2001
From: Ehsan ESTAJI <71376358+ehsanestaji@users.noreply.github.com>
Date: Mon, 18 May 2026 20:46:44 +0200
Subject: [PATCH] chore: prepare v0.1.1 packaging release
---
Cargo.lock | 2 +-
Cargo.toml | 2 +-
README.md | 1 +
docs/packaging.md | 6 +--
docs/releases/v0.1.1.md | 45 +++++++++++++++++++
.../reports/assembly_fail/fastaguard.json | 2 +-
.../assembly_fail/fastaguard_report.html | 2 +-
.../reports/assembly_pass/fastaguard.json | 2 +-
.../assembly_pass/fastaguard_report.html | 2 +-
packaging/bioconda/meta.yaml | 2 +-
tests/golden/invalid_empty_record.json | 2 +-
tests/golden/problem_assembly.json | 2 +-
tests/golden/valid_assembly.json | 2 +-
tests/python/test_release_metadata.py | 27 +++++++++++
14 files changed, 86 insertions(+), 13 deletions(-)
create mode 100644 docs/releases/v0.1.1.md
create mode 100644 tests/python/test_release_metadata.py
diff --git a/Cargo.lock b/Cargo.lock
index 278d545..3ce8505 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -324,7 +324,7 @@ dependencies = [
[[package]]
name = "fastaguard"
-version = "0.1.0"
+version = "0.1.1"
dependencies = [
"anyhow",
"assert_cmd",
diff --git a/Cargo.toml b/Cargo.toml
index 5d1741f..041695e 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -1,6 +1,6 @@
[package]
name = "fastaguard"
-version = "0.1.0"
+version = "0.1.1"
edition = "2021"
license = "MIT"
description = "FASTA preflight QC for assembly pipelines"
diff --git a/README.md b/README.md
index 15234fd..c2afa3c 100644
--- a/README.md
+++ b/README.md
@@ -140,6 +140,7 @@ FastaGuard catches FASTA-level assembly problems before expensive assembly QC.
- [LLM and tooling vision](docs/llm-tooling-vision.md)
- [Benchmarking](docs/benchmarking.md)
- [Packaging](docs/packaging.md)
+- [v0.1.1 release notes](docs/releases/v0.1.1.md)
- [v0.1.0 release notes](docs/releases/v0.1.0.md)
- [Roadmap](docs/roadmap.md)
- [First-release design](docs/superpowers/specs/2026-05-18-fastaguard-first-release-design.md)
diff --git a/docs/packaging.md b/docs/packaging.md
index efec7ab..51959dd 100644
--- a/docs/packaging.md
+++ b/docs/packaging.md
@@ -58,8 +58,8 @@ For the first public release:
1. Tag the release:
```bash
- git tag v0.1.0
- git push origin v0.1.0
+ git tag v0.1.1
+ git push origin v0.1.1
```
2. Push the tag to trigger `.github/workflows/release.yml`.
@@ -120,7 +120,7 @@ Once the Bioconda recipe is merged upstream, BioContainers can build the corresp
## MultiQC
-FastaGuard v0.1.0 emits MultiQC custom content as `fastaguard_mqc.json`.
+FastaGuard emits MultiQC custom content as `fastaguard_mqc.json`.
A native MultiQC plugin starter now lives in:
diff --git a/docs/releases/v0.1.1.md b/docs/releases/v0.1.1.md
new file mode 100644
index 0000000..a4b5ae8
--- /dev/null
+++ b/docs/releases/v0.1.1.md
@@ -0,0 +1,45 @@
+# FastaGuard v0.1.1
+
+FastaGuard v0.1.1 is a packaging metadata release for downstream adoption.
+
+The CLI behavior remains assembly-focused and compatible with v0.1.0. The
+important change is that the source tree now includes the metadata needed for a
+clean Bioconda submission.
+
+## Highlights
+
+- Adds an MIT `LICENSE` file to the source archive.
+- Adds Bioconda recipe scaffolding under `packaging/bioconda/`.
+- Adds a native MultiQC plugin starter under `integrations/multiqc/`.
+- Adds adoption, tool landscape, and benchmark evidence planning docs.
+- Updates CI and release workflows to Node 24-compatible GitHub action versions.
+
+## Install From Release Assets
+
+Download the archive for your platform, unpack it, and place `fastaguard` on
+`PATH`:
+
+```bash
+tar -xzf fastaguard-v0.1.1-x86_64-unknown-linux-gnu.tar.gz
+./fastaguard-v0.1.1-x86_64-unknown-linux-gnu/fastaguard --help
+```
+
+## Bioconda Note
+
+This release is intended to be the first source archive suitable for Bioconda:
+it contains the project license file and the stable v0.1 FASTA preflight
+contract commands:
+
+```bash
+fastaguard --help
+fastaguard --schema
+fastaguard --finding-catalog
+```
+
+## Known Limits
+
+- v0.1.1 still supports the `assembly` profile only.
+- FastaGuard does not estimate biological completeness, taxonomic
+ contamination, or assembly correctness.
+- Bioconda submission still requires the public source archive SHA256 to be
+ recorded in the recipe.
diff --git a/examples/reports/assembly_fail/fastaguard.json b/examples/reports/assembly_fail/fastaguard.json
index 7b7551e..64bb0c5 100644
--- a/examples/reports/assembly_fail/fastaguard.json
+++ b/examples/reports/assembly_fail/fastaguard.json
@@ -2,7 +2,7 @@
"schema_version": "0.1.0",
"tool": {
"name": "FastaGuard",
- "version": "0.1.0"
+ "version": "0.1.1"
},
"input": {
"path": "testdata/problem_assembly.fa",
diff --git a/examples/reports/assembly_fail/fastaguard_report.html b/examples/reports/assembly_fail/fastaguard_report.html
index cf7c87a..74e0441 100644
--- a/examples/reports/assembly_fail/fastaguard_report.html
+++ b/examples/reports/assembly_fail/fastaguard_report.html
@@ -363,7 +363,7 @@ JSON
"schema_version": "0.1.0",
"tool": {
"name": "FastaGuard",
- "version": "0.1.0"
+ "version": "0.1.1"
},
"input": {
"path": "testdata/problem_assembly.fa",
diff --git a/examples/reports/assembly_pass/fastaguard.json b/examples/reports/assembly_pass/fastaguard.json
index 3415304..7d63625 100644
--- a/examples/reports/assembly_pass/fastaguard.json
+++ b/examples/reports/assembly_pass/fastaguard.json
@@ -2,7 +2,7 @@
"schema_version": "0.1.0",
"tool": {
"name": "FastaGuard",
- "version": "0.1.0"
+ "version": "0.1.1"
},
"input": {
"path": "testdata/valid_assembly.fa",
diff --git a/examples/reports/assembly_pass/fastaguard_report.html b/examples/reports/assembly_pass/fastaguard_report.html
index 99cc203..1eecefd 100644
--- a/examples/reports/assembly_pass/fastaguard_report.html
+++ b/examples/reports/assembly_pass/fastaguard_report.html
@@ -123,7 +123,7 @@ JSON
"schema_version": "0.1.0",
"tool": {
"name": "FastaGuard",
- "version": "0.1.0"
+ "version": "0.1.1"
},
"input": {
"path": "testdata/valid_assembly.fa",
diff --git a/packaging/bioconda/meta.yaml b/packaging/bioconda/meta.yaml
index f505ff0..cea5ce0 100644
--- a/packaging/bioconda/meta.yaml
+++ b/packaging/bioconda/meta.yaml
@@ -1,5 +1,5 @@
{% set name = "fastaguard" %}
-{% set version = "0.1.0" %}
+{% set version = "0.1.1" %}
package:
name: {{ name|lower }}
diff --git a/tests/golden/invalid_empty_record.json b/tests/golden/invalid_empty_record.json
index bf39fa7..fa84995 100644
--- a/tests/golden/invalid_empty_record.json
+++ b/tests/golden/invalid_empty_record.json
@@ -2,7 +2,7 @@
"schema_version": "0.1.0",
"tool": {
"name": "FastaGuard",
- "version": "0.1.0"
+ "version": "0.1.1"
},
"input": {
"path": "testdata/invalid_empty_record.fa",
diff --git a/tests/golden/problem_assembly.json b/tests/golden/problem_assembly.json
index f18ff46..f225122 100644
--- a/tests/golden/problem_assembly.json
+++ b/tests/golden/problem_assembly.json
@@ -2,7 +2,7 @@
"schema_version": "0.1.0",
"tool": {
"name": "FastaGuard",
- "version": "0.1.0"
+ "version": "0.1.1"
},
"input": {
"path": "testdata/problem_assembly.fa",
diff --git a/tests/golden/valid_assembly.json b/tests/golden/valid_assembly.json
index 81d5c5e..da1ede7 100644
--- a/tests/golden/valid_assembly.json
+++ b/tests/golden/valid_assembly.json
@@ -2,7 +2,7 @@
"schema_version": "0.1.0",
"tool": {
"name": "FastaGuard",
- "version": "0.1.0"
+ "version": "0.1.1"
},
"input": {
"path": "testdata/valid_assembly.fa",
diff --git a/tests/python/test_release_metadata.py b/tests/python/test_release_metadata.py
new file mode 100644
index 0000000..605318e
--- /dev/null
+++ b/tests/python/test_release_metadata.py
@@ -0,0 +1,27 @@
+import tomllib
+import unittest
+from pathlib import Path
+
+
+ROOT = Path(__file__).resolve().parents[2]
+
+
+class ReleaseMetadataTest(unittest.TestCase):
+ def test_package_and_bioconda_recipe_target_v0_1_1(self):
+ cargo = tomllib.loads((ROOT / "Cargo.toml").read_text())
+ recipe = (ROOT / "packaging" / "bioconda" / "meta.yaml").read_text()
+
+ self.assertEqual(cargo["package"]["version"], "0.1.1")
+ self.assertIn('{% set version = "0.1.1" %}', recipe)
+
+ def test_v0_1_1_release_notes_exist(self):
+ notes = ROOT / "docs" / "releases" / "v0.1.1.md"
+
+ self.assertTrue(notes.exists())
+ text = notes.read_text()
+ self.assertIn("FastaGuard v0.1.1", text)
+ self.assertIn("packaging metadata", text)
+
+
+if __name__ == "__main__":
+ unittest.main()