history_gitandgithub.txt

    1  nano
    2  git -- version
    3  git --version
    4  nano --version
    5  nano
    6  cd ~/Desktop/workshop/unix_intro
    7  ls
    8  date
    9  date -u
   10  head example.txt
   11  head -n 5 example.txt
   12  head --help
   13  man head
   14  pwd
   15  ls
   16  head example.txt
   17  head notes.txt
   18  head experiment/notes.txt
   19  head example.txt 
   20  head ex
   21  head example.txt 
   22  he
   23  help 
   24  he
   25  cd experiment
   26  cd experiment/
   27  owd
   28  cd experiment/
   29  cd ~/Desktop/workshop/unix_intro
   30  cd experiment/
   31  owd
   32  pwd
   33  ls
   34  head notes.txt 
   35  pwd
   36  cd ..
   37  pwd
   38  cd ~/Desktop/workshop/unix_intro
   39  head example.txt
   40  tail example.txt
   41  less example.txt 
   42  wc example.txt 
   43  man wc
   44  wc -;
   45  wc -l
   46  cd ~/Desktop/workshop/unix_intro
   47  cd ~/Desktop/workshop/unix_intro
   48  head example.txt
   49  tail example.txt
   50  less example.txt
   51  wc example.txt 
   52  wc -l example.txt 
   53  man wc
   54  ls
   55  cp example.txt example_copy.txt
   56  ls
   57  ls
   58  cp example.txt example_copy.txt
   59  ls
   60  ls data/
   61  cp example.txt data/example_copy.txt
   62  ls data/
   63  ls
   64  ls experiment/
   65  mv example_copy.txt experiment/
   66  ls
   67  ls experiment/
   68  ls
   69  ls experiment/
   70  mv example_copy.txt experiment/
   71  ls
   72  experiment/
   73  ls
   74  mv notes.txt notes_old.txt
   75  ls
   76  ls
   77  rm notes_old.txt
   78  ls
   79  nano sample_names.txt
   80  head sample_names.txt 
   81  ls
   82  mkdir
   83  ls
   84  mkdir subset
   85  ls
   86  rmdir subset/
   87  ls
   88  rmdir
   89  rmdir experiment/
   90  cp experiment experiment_copy
   91  cp -r experiment experiment_copy
   92  ls
   93  rmdir experiment_copy
   94  rm -r experiment_copy/
   95  ls
   96  cd ~/Desktop/workshop/unix_intro
   97  pwd
   98  ls
   99  mv sample_names.txt sample_names_2.txt
  100  ls
  101  wc -l example.txt 
  102  ls
  103  ls | wc -l
  104  ls data/
  105  ls data/all_samples/
  106  ls | wc -l
  107  | wc -l
  108  | wc -l
  109  ls data/all_samples/
  110  | wc -l
  111  ls data/all_samples/ | wc -l
  112  ls
  113  ls > directory_contexts.txt
  114  ls
  115  head directory_contexts.txt 
  116  ls experiment/
  117  ls experiment/ > directory_contexts.txt 
  118  head directory_contexts.txt 
  119  ls >> directory_contexts.txt 
  120  head directory_contexts.txt 
  121  ls
  122  ls *.txt
  123  cd data/all_samples/
  124  ls
  125  ls *.tsv
  126  ls *.fq
  127  ls | wc -1
  128  cd data/all_samples/
  129  ls
  130  cd data/all_samples/
  131  ls
  132  ls | wc -l
  133  ls | wc -l *.tsv
  134  ls *tsv | wc -l
  135  ls *txt | wc -l
  136  ls *fq | wc -l
  137  mkdir fastq_files
  138  ls fastq_files
  139  ls *.fq
  140  mv *.fq fastq_files/
  141  ls fastq_files/
  142  ls | wc -l
  143  history
  144  history | tail
  145  history | head
  146  history | less
  147  pwd
  148  cd fastq_files/
  149  ls
  150  ls sample_1*.fq
  151  ls sample_1?.fq
  152  cd ~/Desktop/workshop/unix_intro
  153  ls
  154  cd ~/Desktop/workshop/unix_intro/six_commands/
  155  head gene_annotations.tsv
  156  head -n 1 gene_annotations.tsv
  157  wc -l gene_annotations.tsv
  158  cut -f 1 gene_annotations.tsv
  159  cut -f 1 gene_annotations.tsv | head
  160  cut -f 1,3 gene_annotations.tsv
  161  cut -f 1,3 gene_annotations.tsv | head
  162  cut -f 1-2,3-4 gene_annotations.tsv | head
  163  head colors.txt
  164  grep blue colors.txt
  165  grep re colors.txt
  166  grep black colors.txt
  167  grep K09765 gene_annotations.tsv
  168  head -n 1 gene_annotations.tsv
  169  grep K09765 gene_annotations.tsv
  170  grep K18979 gene_annotations.tsv
  171  grep -c K18979 gene_annotations.tsv
  172  head colores.txt
  173  paste colors.txt colores.txt
  174  head genes_and_seqs.tsv
  175  less -S genes_and_seqs.tsv
  176  paste gene_annotations.tsv genes_and_seqs.tsv | head -n 1
  177  paste gene_annotations.tsv genes_and_seqs.tsv | cut -f 1-4,6- | head -n 2
  178  cd ~/Desktop/workshop/unix_intro
  179  my_var=ANGUS
  180  echo $my_var
  181  echo my_var
  182  mkdir for_loops
  183  cd for_loops/
  184  ls
  185  pwd
  186  cd ..
  187  pwd
  188  my_new_var="Tucson, Arizona, USA"
  189  echo $my_new_var
  190  mkdir for_loops
  191  cd for_loops/
  192  pwd
  193  new_var=welcome_back
  194  echo $new_var
  195  for item in earth mars venus; do echo $item; done
  196  for item in earth mars venus; do echo $item; done
  197  for item in earth mars venus; do echo $item; echo $item > planets.txt; done
  198* 
  199  for item in earth mars venus; do echo $item; echo $item >> planets.txt; done
  200  ls
  201  for item in earth mars venus; do   echo $item;   echo $item >> planets.txt; done
  202  ls
  203  head planets.txt
  204  cat planets.txt 
  205  for item in $(cat planets.txt); do echo $item; done
  206  for object in $(head directory_contents.txt); do echo $object; done
  207  pwd
  208  history
  209  history > history_unix.txt
  210  ls
  211  cat
  212  cat history_unix.txt
  213  pwd
  214  cd ..
  215  pwd
  216  cd ..
  217  pwd
  218  mkdir git_lesson
  219  pwd
  220  cd git_lesson/
  221  pwd
  222  ls
  223  git init
  224  la
  225  ls
  226  ls -a
  227  pwd
  228  rmdir .git
  229  rm -r .git
  230  ls -a
  231  pwd
  232  cd ..
  233  pwd
  234  git init
  235  pwd
  236  ls -a
  237  git config --global user.name "Elliot Truslow"
  238  git config --global user.email "elliot@email.arizona.edu"
  239  git config --list
  240  git config --list
  241  git config --global user.name "Elliot Truslow"
  242  git config --global user.email "elliot@email.arizona.edu"
  243  git config --list
  244  pwd
  245  ls
  246  ls -a
  247  git config --global user.name "Elliot Truslow"
  248  git config --global user.email "elliot@email.arizona.edu"
  249  git config --list
  250  git add --all
  251  git commit --message "initialize the workshop directory as a repository"
  252  pwd
  253  cd git_lesson/
  254  powd
  255  pwd
  256  ls
  257  touch practice.txt
  258  ls
  259  head practice.txt 
  260  git add practice.txt 
  261  git commit --message "practiced committing new file"
  262  git status
  263  echo > "this is a line that I'm appending to a file" >> practice.txt 
  264  cat practice.txt 
  265  echo "this is a line I'm adding to 'practice.txt'" >> practice.txt 
  266  cat practice.txt 
  267  git status
  268  git add practice.txt 
  269  git status
  270  git commit --message "we're doing more git practice and using the append >> function"
  271  git diff
  272  git status
  273  git status
  274  git add
  275  git add this is a line that I'm appending to a file

  276  "git add"
  277  git status
  278  git add practice.txt 
  279  git diff
  280  git commit --message "done"
  281  git diff
  282  git diff
  283  git status
  284  git add practice.txt 
  285  git commit --message "trying to fix this shit"
  286  ls
  287  rm this\ is\ a\ line\ that\ I\'m\ appending\ to\ a\ file 
  288  git status
  289  git diff
  290  echo "This line was added to 'practice.txt' using '>>' in bash" >> practice.txt
  291  git status
  292  echo "This line was added to 'practice.txt' using '>>' in bash" >> practice.txt
  293  echo "This line was added to 'practice.txt' using '>>' in bash" >> practice.txt
  294  ls
  295  echo "this is a new try" >> practice.txt
  296  git diff
  297  git add practice.txt 
  298  git status
  299  git add practice.txt 
  300  git commit --message "HOORAY"git add"
  301  git status
  302  git add practice.txt 
  303  git commit --message "fuck please work"
  304  git status
  305  git log
  306  nano practice.txt 
  307  git diff
  308  git add practice.txt 
  309  git status
  310  git commit --message "making changes to the file"
  311  git status
  312  nano practice.txt 
  313  nano practice.txt 
  314  git diff
  315  cd ~/Desktop/workshop/git_lesson/
  316  touch newfile.txt
  317  git add newfile.txt
  318  git add practice.txt 
  319  git status
  320  git commit --message "adding new file and practice in same commit"
  321  git status
  322  git log
  323  git remote add origin https://github.com/elliotcodes/workshop.git
  324  git push -u origin master
  325  git remote add origin https://github.com/elliotcodes/workshop.git
  326  git push -u origin master
  327  git remote --verbose
  328  pwd
  329  cd ..
  330  pwd
  331  git pull
  332  nano newfile.txt
  333  git status
  334  git add newfile.txt 
  335  git status
  336  git commit --message "new file to be added"
  337  git log
  338  git push
  339  nano /git-lesson/file.txt
  340  nano newfile.txt 
  341  git status
  342  git add newfile.txt 
  343  git status
  344  git commit --message "confirming these changes"
  345  git push
  346  history
  347  history cat git_and_github.txt
  348  history > history_gitandgithub.txt