Integron_Finder/codemeta.json at master · gem-pasteur/Integron_Finder · GitHub

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{
    "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
    "type": "SoftwareSourceCode",
    "applicationCategory": "Bioinformatic",
    "author": [
        {
            "id": "https://orcid.org/0000-0002-0220-0482",
            "type": "Person",
            "affiliation": {
                "type": "Organization",
                "name": "Bioinformatics and Biostatistics Hub, Institut Pasteur, Université de Paris Cité, 75015 Paris, France"
            },
            "email": "bneron@pasteur.fr",
            "familyName": "Néron",
            "givenName": "Bertrand"
        },
        {
            "id": "https://orcid.org/0000-0002-6462-8783",
            "type": "Person",
            "affiliation": {
                "type": "Organization",
                "name": "Molecular diversity of microbes, Institut Pasteur, Université de Paris Cité, CNRS UMR3525, 75015 Paris, France"
            },
            "email": "jean.cury@normalesup.org",
            "familyName": "Cury",
            "givenName": "Jean"
        },
        {
            "id": "https://orcid.org/0000-0001-7704-822X",
            "type": "Person",
            "affiliation": {
                "type": "Organization",
                "name": "Microbial Evolutionary Genomics, Institut Pasteur, Université de Paris Cité, CNRS UMR3525, 75015 Paris, France"
            },
            "email": "erocha@pasteur.fr",
            "familyName": "Rocha",
            "givenName": "Eduardo"
        }
    ],
    "codeRepository": "https://github.com/gem-pasteur/Integron_Finder",
    "contributor": [
        {
            "id": "https://orcid.org/0000-0002-8793-9584",
            "type": "Person",
            "affiliation": {
                "type": "Organization",
                "name": "Microbial Evolutionary Genomics, Institut Pasteur, Université de Paris Cité, CNRS UMR3525, 75015 Paris, France /  DGA CBRN Defence, 91710 Vert-le-Petit, France"
            },
            "email": "eloi.littner@pasteur.fr",
            "familyName": "Littner",
            "givenName": "Eloi"
        },
        {
            "id": "https://orcid.org/0000-0002-0878-2209",
            "type": "Person",
            "affiliation": {
                "type": "Organization",
                "name": "Microbial Evolutionary Genomics, Institut Pasteur, Université de Paris Cité, CNRS UMR3525, 75015 Paris, France / Ecole Doctorale FIRE–Programme Bettencourt, CRI, 75004 Paris, France"
            },
            "email": "matthieu.haudiquet@pasteur.fr",
            "familyName": "Haudiquet",
            "givenName": "Matthieu"
        },
        {
            "id": "https://orcid.org/0000-0003-4797-6185",
            "type": "Person",
            "affiliation": {
                "type": "Organization",
                "name": "Microbial Evolutionary Genomics, Institut Pasteur, Université de Paris Cité, CNRS UMR3525, 75015 Paris, France / Collège Doctoral, Sorbonne Université, 75005 Paris, France"
            },
            "email": "amandine.perrin@pasteur.fr",
            "familyName": "Perrin",
            "givenName": "Amandine"
        }
    ],
    "dateModified": "2025-06-05",
    "datePublished": "2015-06-19",
    "description": "Integron_Finder is a program that detects integrons in DNA sequences.",
    "downloadUrl": "https://pypi.org/project/integron-finder/",
    "funder": {
        "type": "Organization",
        "name": "Institut Pasteur, CNRS"
    },
    "keywords": [
        "integron",
        "genomic",
        "antibiotic resistance",
        "bioinformatic"
    ],
    "license": "https://spdx.org/licenses/GPL-3.0",
    "name": "Integron_Finder",
    "operatingSystem": [
        "Linux",
        "macOS"
    ],
    "programmingLanguage": "Python 3",
    "relatedLink": "https://integronfinder.readthedocs.io/en/v2.0.6/",
    "softwareRequirements": [
        "https://www.python.org/ftp/python/3.13.3/Python-3.13.3.tar.xz",
        "https://pypi.org/project/pandas/2.2.3/",
        "https://pypi.org/project/numpy/2.2.5/",
        "https://pypi.org/project/biopython/1.85/",
        "https://pypi.org/project/matplotlib/3.10.1/",
        "https://pypi.org/pypi/colorlog/",
        "http://eddylab.org/software/hmmer/hmmer-3.4.tar.gz",
        "http://eddylab.org/infernal/infernal-1.1.5.tar.gz",
        "https://github.com/hyattpd/Prodigal/archive/refs/tags/v2.6.3.tar.gz"
    ],
    "version": "2.0.6",
    "contIntegration": "https://github.com/gem-pasteur/Integron_Finder/actions",
    "codemeta:continuousIntegration": {
        "id": "https://github.com/gem-pasteur/Integron_Finder/actions"
    },
    "developmentStatus": "active",
    "funding": "ANR-16-CONV-0005, EQU201903007835, ANR-10-LABX-62-IBEID",
    "issueTracker": "https://github.com/gem-pasteur/Integron_Finder/issues",
    "referencePublication": "https://doi.org/10.3390/microorganisms10040700"
}